NEW: Starting a large job on file /tmp/motif_master/12225_WEEDER/hsp_guha_5_19.fa

Organism code: CE

Processing both strands

/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/12225_WEEDER/hsp_guha_5_19.fa CE large S


Searching for motifs of length 6 with 1 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12225_WEEDER/hsp_guha_5_19.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) TCTAGA 1.33
2) ATTTTT 1.32
3) CATATG 0.80
4) GTCACC 0.79
5) AAGCTT 0.75
6) TATATA 0.70
7) AGGACC 0.69
8) GTCACT 0.69
9) TGTACA 0.66
10) GACGTC 0.65

Elapsed time : 0 min. 2 sec.


Searching for motifs of length 8 with 2 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12225_WEEDER/hsp_guha_5_19.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) AGGCGCCT 1.35
2) GAATATTC 1.35
3) GTCTAGAC 1.34
4) GAACGTTC 1.28
5) TTCTAGAA 1.24
6) GTGATCAC 1.15
7) TCATATGA 1.14
8) GGACGTCC 1.08
9) TCTAGAAG 1.04
10) TTACGTAA 1.03

Elapsed time : 0 min. 56 sec.


Searching for motifs of length 10 with 3 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12225_WEEDER/hsp_guha_5_19.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) AGAACGTTCT 1.60
2) GTTCTAGAAC 1.31
3) CTTCTAGAAG 1.31
4) GGAATATTCC 1.24
5) AAGGTTCTAG 1.21
6) GTATATATAC 1.19
7) AGGTCCTAGA 1.18
8) GTTCTAGAAG 1.15
9) AACCTTCTAG 1.14
10) ACCTTCTAGA 1.12

Elapsed time : 19 min. 52 sec.


Searching for motifs of length 12 with 4 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12225_WEEDER/hsp_guha_5_19.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) GAATGTTCTAGA 2.72
2) GAACGTTCTAGA 2.64
3) GAATCTTCTAGA 2.62
4) GAACCTTCTAGA 2.58
5) AGAACGTTCTAG 2.54
6) GAAGGTTCTAGA 2.52
7) AGAACCTTCTAG 2.51
8) AGAAGGTTCTAG 2.48
9) TAGAAGGTTCTA 2.45
10) AGAATGTTCTAG 2.45

Elapsed time : -33 min. -19 sec.


Your sequences:

Sequence 1 : >ID1927016_F55A12.9a_u2k_truncated
Sequence 2 : >ID1927222_T27A3.4_u2k_truncated
Sequence 3 : >ID1928077_C12C8.1_u2k_truncated
Sequence 4 : >ID1928832_W02D9.10_u2k_truncated
Sequence 5 : >ID1930075_F33H12.6_u2k_truncated
Sequence 6 : >ID1930685_F41C3.2_u2k_truncated
Sequence 7 : >ID1931571_ZK1290.5_u2k_truncated
Sequence 8 : >ID1931846_M05D6.1_u2k_truncated
Sequence 9 : >ID1932078_D2013.9_u2k_truncated
Sequence 10 : >ID1932491_R03D7.2_u2k_truncated
Sequence 11 : >ID1932687_F44E5.5_u2k_truncated
Sequence 12 : >ID1933117_F08G2.5_u2k_truncated
Sequence 13 : >ID1935452_C30C11.4_u2k_truncated
Sequence 14 : >ID1937592_T28H11.7_u2k_truncated
Sequence 15 : >ID1938242_C50F7.5_u2k_truncated
Sequence 16 : >ID1942754_H14N18.1a_u2k_truncated
Sequence 17 : >ID1942810_T27E4.2_u2k_truncated
Sequence 18 : >ID1943531_T27F2.4_u2k_truncated
Sequence 19 : >ID1944135_F58E10.4_u2k_truncated
Sequence 20 : >ID1944405_C25D7.1_u2k_truncated
Sequence 21 : >ID1945522_C25F9.2_u2k_truncated
Sequence 22 : >ID1945707_Y38H6C.7_u2k_truncated
Sequence 23 : >ID1947530_F53A9.2_u2k_truncated
Sequence 24 : >ID1947747_R07B1.4_u2k_truncated
Sequence 25 : >ID1947801_F09B9.1_u2k_truncated


**** MY ADVICE ****


*** Interesting motifs (highest-ranking) seem to be :


GAATATTC
GAATATTC

2 redundant motifs found:
GGAATATTCC - GAACGTTC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [GAATTTTG] 208 (85.71)
1 + [GAATTTTT] 788 (89.71)
1 + [GAAAATTT] 1083 (89.71)
1 + [CAATTTTC] 1424 (85.71)
1 - [GAAAATTG] 1424 (85.71)
1 - [AAATTTTC] 1083 (89.71)
1 - [AAAAATTC] 788 (89.71)
1 - [CAAAATTC] 208 (85.71)
2 + .AAATATTC. 147 (94.71)
2 + [TAAAATTC] 158 (86.58)
2 + [GAAAATTA] 166 (86.58)
2 + [CAATTTTC] 435 (85.71)
2 + [AAAAATTC] 600 (89.71)
2 + [GAATTTTA] 1028 (86.58)
2 - [TAAAATTC] 1028 (86.58)
2 - [GAATTTTT] 600 (89.71)
2 - [GAAAATTG] 435 (85.71)
2 - [TAATTTTC] 166 (86.58)
2 - [GAATTTTA] 158 (86.58)
2 - .GAATATTT. 147 (94.71)
3 + [AAAAATTC] 232 (89.71)
3 + [CAATTTTC] 273 (85.71)
3 + .GAATATTA. 484 (91.58)
3 + [AAATGTTC] 507 (85.64)
3 + .AAATATTC. 721 (94.71)
3 + [GAAAGTTC] 813 (85.92)
3 + [GAATTTTA] 1103 (86.58)
3 + [GAATTTTT] 1120 (89.71)
3 - [AAAAATTC] 1120 (89.71)
3 - [TAAAATTC] 1103 (86.58)
3 - [GAACTTTC] 813 (85.92)
3 - .GAATATTT. 721 (94.71)
3 - [GAACATTT] 507 (85.64)
3 - .TAATATTC. 484 (91.58)
3 - [GAAAATTG] 273 (85.71)
3 - [GAATTTTT] 232 (89.71)
4 + [AAATATTT] 823 (89.43)
4 + .GAAAATTC. 1985 (94.99)
4 - .GAATTTTC. 1985 (94.99)
4 - [AAATATTT] 823 (89.43)
5 + [AAATTTTC] 500 (89.71)
5 + [GAAAATTT] 543 (89.71)
5 + [AAATTTTC] 564 (89.71)
5 + [AAATTTTC] 627 (89.71)
5 + [GAAAATTT] 638 (89.71)
5 + [AAATTTTC] 659 (89.71)
5 + [AAATTTTC] 691 (89.71)
5 + [AAATTTTC] 723 (89.71)
5 + .GAATCTTC. 953 (90.00)
5 + [GAAATTTC] 963 (89.98)
5 + [TAATTTTC] 1062 (86.58)
5 + .GAAAATTC. 1071 (94.99)
5 + [GAATTTTG] 1091 (85.71)
5 + .GAAAATTC. 1111 (94.99)
5 + .GAATCTTC. 1293 (90.00)
5 + .GAATGTTC. 1323 (90.92)
5 + .GAAGATTC. 1398 (90.00)
5 + .GAATCTTC. 1564 (90.00)
5 + [AAAAATTC] 1575 (89.71)
5 + [GAAAATTA] 1596 (86.58)
5 + [TAATTTTC] 1604 (86.58)
5 + [GAATTTTA] 1808 (86.58)
5 - [TAAAATTC] 1808 (86.58)
5 - [GAAAATTA] 1604 (86.58)
5 - [TAATTTTC] 1596 (86.58)
5 - [GAATTTTT] 1575 (89.71)
5 - .GAAGATTC. 1564 (90.00)
5 - .GAATCTTC. 1398 (90.00)
5 - .GAACATTC. 1323 (90.92)
5 - .GAAGATTC. 1293 (90.00)
5 - .GAATTTTC. 1111 (94.99)
5 - [CAAAATTC] 1091 (85.71)
5 - .GAATTTTC. 1071 (94.99)
5 - [GAAAATTA] 1062 (86.58)
5 - [GAAATTTC] 963 (89.98)
5 - .GAAGATTC. 953 (90.00)
5 - [GAAAATTT] 723 (89.71)
5 - [GAAAATTT] 691 (89.71)
5 - [GAAAATTT] 659 (89.71)
5 - [AAATTTTC] 638 (89.71)
5 - [GAAAATTT] 627 (89.71)
5 - [GAAAATTT] 564 (89.71)
5 - [AAATTTTC] 543 (89.71)
5 - [GAAAATTT] 500 (89.71)
6 + .GAATTTTC. 35 (94.99)
6 + .GAATTTTC. 320 (94.99)
6 + [GAAAATTA] 365 (86.58)
6 + .GAATATTT. 1188 (94.71)
6 + [TAATTTTC] 1589 (86.58)
6 + [CAATTTTC] 1981 (85.71)
6 - [GAAAATTG] 1981 (85.71)
6 - [GAAAATTA] 1589 (86.58)
6 - .AAATATTC. 1188 (94.71)
6 - [TAATTTTC] 365 (86.58)
6 - .GAAAATTC. 320 (94.99)
6 - .GAAAATTC. 35 (94.99)
7 + [GAATTTTT] 513 (89.71)
7 + [AAATATTT] 533 (89.43)
7 + [GAAAATTT] 575 (89.71)
7 + [AAATATTT] 587 (89.43)
7 + [GTATATTC] 651 (87.53)
7 + [GAAAATTA] 1084 (86.58)
7 - [TAATTTTC] 1084 (86.58)
7 - [GAATATAC] 651 (87.53)
7 - [AAATATTT] 587 (89.43)
7 - [AAATTTTC] 575 (89.71)
7 - [AAATATTT] 533 (89.43)
7 - [AAAAATTC] 513 (89.71)
8 + [AAATATTT] 365 (89.43)
8 + [GAATTTTT] 538 (89.71)
8 - [AAAAATTC] 538 (89.71)
8 - [AAATATTT] 365 (89.43)
9 + .GAATATTC. 65 (100.00)
9 + [AAATATTT] 207 (89.43)
9 + [AAATATTT] 223 (89.43)
9 - [AAATATTT] 223 (89.43)
9 - [AAATATTT] 207 (89.43)
9 - .GAATATTC. 65 (100.00)
10 + [GAACATTT] 111 (85.64)
10 + [AAATATTA] 393 (86.30)
10 + [GAGTATTC] 587 (86.20)
10 + [GAAAGTTC] 1287 (85.92)
10 + .GAAGATTC. 1385 (90.00)
10 + [TAATTTTC] 1477 (86.58)
10 + [GAATTTTT] 1687 (89.71)
10 + [GAATTTTT] 1728 (89.71)
10 - [AAAAATTC] 1728 (89.71)
10 - [AAAAATTC] 1687 (89.71)
10 - [GAAAATTA] 1477 (86.58)
10 - .GAATCTTC. 1385 (90.00)
10 - [GAACTTTC] 1287 (85.92)
10 - [GAATACTC] 587 (86.20)
10 - [TAATATTT] 393 (86.30)
10 - [AAATGTTC] 111 (85.64)
11 + .GAATATTC. 116 (100.00)
11 + .GAATGTTC. 272 (90.92)
11 + .GAATATTC. 324 (100.00)
11 - .GAATATTC. 324 (100.00)
11 - .GAACATTC. 272 (90.92)
11 - .GAATATTC. 116 (100.00)
12 + [GAATTTTG] 659 (85.71)
12 + [AAATGTTC] 898 (85.64)
12 + [GAAATTTC] 942 (89.98)
12 + [GAAATTTC] 976 (89.98)
12 + [GAAAATTT] 1113 (89.71)
12 + [AAATTTTC] 1148 (89.71)
12 + [CAATTTTC] 1164 (85.71)
12 + [GAAAATTG] 1231 (85.71)
12 + [AAATGTTC] 1269 (85.64)
12 + [CAATTTTC] 1287 (85.71)
12 + [CAATATTT] 1354 (85.43)
12 - [AAATATTG] 1354 (85.43)
12 - [GAAAATTG] 1287 (85.71)
12 - [GAACATTT] 1269 (85.64)
12 - [CAATTTTC] 1231 (85.71)
12 - [GAAAATTG] 1164 (85.71)
12 - [GAAAATTT] 1148 (89.71)
12 - [AAATTTTC] 1113 (89.71)
12 - [GAAATTTC] 976 (89.98)
12 - [GAAATTTC] 942 (89.98)
12 - [GAACATTT] 898 (85.64)
12 - [CAAAATTC] 659 (85.71)
13 + [GAATTTTA] 174 (86.58)
13 + .GAATATTC. 216 (100.00)
13 + [GAAATTTC] 333 (89.98)
13 + [AAATATTT] 346 (89.43)
13 - [AAATATTT] 346 (89.43)
13 - [GAAATTTC] 333 (89.98)
13 - .GAATATTC. 216 (100.00)
13 - [TAAAATTC] 174 (86.58)
15 + [CAAAATTC] 66 (85.71)
15 + .GAATATTG. 668 (90.72)
15 + [AAATATTT] 782 (89.43)
15 + .GAATATTT. 1098 (94.71)
15 + [GAATGTTT] 1263 (85.64)
15 + .TAATATTC. 1626 (91.58)
15 + [CAAAATTC] 1747 (85.71)
15 - [GAATTTTG] 1747 (85.71)
15 - .GAATATTA. 1626 (91.58)
15 - [AAACATTC] 1263 (85.64)
15 - .AAATATTC. 1098 (94.71)
15 - [AAATATTT] 782 (89.43)
15 - .CAATATTC. 668 (90.72)
15 - [GAATTTTG] 66 (85.71)
16 + .GAATTTTC. 128 (94.99)
16 + [GAACATTT] 236 (85.64)
16 + [AAAAATTC] 249 (89.71)
16 + .GAACATTC. 414 (90.92)
16 + .GAATATTT. 854 (94.71)
16 + [GAAAATTG] 1002 (85.71)
16 + [AAATATTA] 1396 (86.30)
16 + [AAATTTTC] 1429 (89.71)
16 + .GAATCTTC. 1580 (90.00)
16 - .GAAGATTC. 1580 (90.00)
16 - [GAAAATTT] 1429 (89.71)
16 - [TAATATTT] 1396 (86.30)
16 - [CAATTTTC] 1002 (85.71)
16 - .AAATATTC. 854 (94.71)
16 - .GAATGTTC. 414 (90.92)
16 - [GAATTTTT] 249 (89.71)
16 - [AAATGTTC] 236 (85.64)
16 - .GAAAATTC. 128 (94.99)
17 + .GAATGTTC. 99 (90.92)
17 + .GAATGTTC. 253 (90.92)
17 - .GAACATTC. 253 (90.92)
17 - .GAACATTC. 99 (90.92)
18 + .GAAAATTC. 72 (94.99)
18 + .AAATATTC. 182 (94.71)
18 + [AAATATTT] 433 (89.43)
18 + [AAATATTG] 551 (85.43)
18 + .GAATTTTC. 708 (94.99)
18 + [GAGTATTC] 755 (86.20)
18 + .GAATATTA. 1114 (91.58)
18 + [TAATATTT] 1362 (86.30)
18 + [AAAAATTC] 1471 (89.71)
18 - [GAATTTTT] 1471 (89.71)
18 - [AAATATTA] 1362 (86.30)
18 - .TAATATTC. 1114 (91.58)
18 - [GAATACTC] 755 (86.20)
18 - .GAAAATTC. 708 (94.99)
18 - [CAATATTT] 551 (85.43)
18 - [AAATATTT] 433 (89.43)
18 - .GAATATTT. 182 (94.71)
18 - .GAATTTTC. 72 (94.99)
19 + [AAATTTTC] 207 (89.71)
19 + [GAATTTTT] 679 (89.71)
19 - [AAAAATTC] 679 (89.71)
19 - [GAAAATTT] 207 (89.71)
20 + [GAATTTTT] 71 (89.71)
20 + [GAAAATTT] 382 (89.71)
20 + [GAATTTTT] 395 (89.71)
20 + [CAATTTTC] 544 (85.71)
20 + [GAATTTTA] 645 (86.58)
20 + [CAATATTT] 733 (85.43)
20 - [AAATATTG] 733 (85.43)
20 - [TAAAATTC] 645 (86.58)
20 - [GAAAATTG] 544 (85.71)
20 - [AAAAATTC] 395 (89.71)
20 - [AAATTTTC] 382 (89.71)
20 - [AAAAATTC] 71 (89.71)
21 + .AAATATTC. 76 (94.71)
21 + .GAATTTTC. 367 (94.99)
21 + [GAATTTTT] 396 (89.71)
21 + [TAATTTTC] 410 (86.58)
21 + .GAATATTA. 485 (91.58)
21 + [GAAAATTT] 1102 (89.71)
21 + .GAATATTT. 1129 (94.71)
21 + [AAATATTT] 1327 (89.43)
21 + [AAATGTTC] 1450 (85.64)
21 + [GAAAATTA] 1540 (86.58)
21 - [TAATTTTC] 1540 (86.58)
21 - [GAACATTT] 1450 (85.64)
21 - [AAATATTT] 1327 (89.43)
21 - .AAATATTC. 1129 (94.71)
21 - [AAATTTTC] 1102 (89.71)
21 - .TAATATTC. 485 (91.58)
21 - [GAAAATTA] 410 (86.58)
21 - [AAAAATTC] 396 (89.71)
21 - .GAAAATTC. 367 (94.99)
21 - .GAATATTT. 76 (94.71)
22 + [AAATATTT] 546 (89.43)
22 + .AAATATTC. 962 (94.71)
22 + .GAATATTC. 1487 (100.00)
22 + [AAATATTT] 1762 (89.43)
22 + [AAATTTTC] 1811 (89.71)
22 + [CAATTTTC] 1846 (85.71)
22 + [AAATGTTC] 1937 (85.64)
22 + [GAAAATTT] 1966 (89.71)
22 - [AAATTTTC] 1966 (89.71)
22 - [GAACATTT] 1937 (85.64)
22 - [GAAAATTG] 1846 (85.71)
22 - [GAAAATTT] 1811 (89.71)
22 - [AAATATTT] 1762 (89.43)
22 - .GAATATTC. 1487 (100.00)
22 - .GAATATTT. 962 (94.71)
22 - [AAATATTT] 546 (89.43)
23 + [AAATGTTC] 82 (85.64)
23 + [GAAAATTA] 176 (86.58)
23 + [GAAAATTA] 205 (86.58)
23 + [TAAAATTC] 239 (86.58)
23 + [CAATTTTC] 371 (85.71)
23 + .GAATTTTC. 419 (94.99)
23 - .GAAAATTC. 419 (94.99)
23 - [GAAAATTG] 371 (85.71)
23 - [GAATTTTA] 239 (86.58)
23 - [TAATTTTC] 205 (86.58)
23 - [TAATTTTC] 176 (86.58)
23 - [GAACATTT] 82 (85.64)
24 + [GAATAATC] 193 (89.40)
24 + [AAAAATTC] 326 (89.71)
24 + [CAATATTT] 570 (85.43)
24 + [GAACATTT] 684 (85.64)
24 + [TAATTTTC] 1133 (86.58)
24 + [AAAAATTC] 1593 (89.71)
24 + .GAAAATTC. 1759 (94.99)
24 - .GAATTTTC. 1759 (94.99)
24 - [GAATTTTT] 1593 (89.71)
24 - [GAAAATTA] 1133 (86.58)
24 - [AAATGTTC] 684 (85.64)
24 - [AAATATTG] 570 (85.43)
24 - [GAATTTTT] 326 (89.71)
24 - [GATTATTC] 193 (89.40)
25 + [AAATATTG] 11 (85.43)
25 + .GAATGTTC. 388 (90.92)
25 + [GAAATTTC] 522 (89.98)
25 + .GAATTTTC. 840 (94.99)
25 + .TAATATTC. 1011 (91.58)
25 + [AAATTTTC] 1183 (89.71)
25 + [GAAAATTG] 1211 (85.71)
25 + [GAACTTTC] 1465 (85.92)
25 + .GAATATTA. 1521 (91.58)
25 + .GAATATTC. 1529 (100.00)
25 - .GAATATTC. 1529 (100.00)
25 - .TAATATTC. 1521 (91.58)
25 - [GAAAGTTC] 1465 (85.92)
25 - [CAATTTTC] 1211 (85.71)
25 - [GAAAATTT] 1183 (89.71)
25 - .GAATATTA. 1011 (91.58)
25 - .GAAAATTC. 840 (94.99)
25 - [GAAATTTC] 522 (89.98)
25 - .GAACATTC. 388 (90.92)
25 - [CAATATTT] 11 (85.43)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		124	48	435	59	|		9	1	76	6
2		598	23	14	31	|		92	0	0	0
3		582	15	22	47	|		92	0	0	0
4		134	51	41	440	|		12	6	6	68
5		440	41	51	134	|		68	6	6	12
6		47	22	15	582	|		0	0	0	92
7		31	14	23	598	|		0	0	0	92
8		59	435	48	124	|		6	76	1	9

---

AGAACGTTCT
AGAACGTTCT

2 redundant motifs found:
AGAACGTTCTAG - GAACGTTC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [AAAATGTTTT] 1069 (87.41)
1 - [AAAACATTTT] 1069 (87.41)
2 + [AAAACTTTTT] 1065 (88.56)
2 - [AAAAAGTTTT] 1065 (88.56)
3 + [AGAAATTTAT] 99 (85.45)
3 + [AGAAAGTTCC] 812 (87.10)
3 + .AGAACGTTCT. 944 (100.00)
3 + .AGAAGGTTCT. 1051 (93.87)
3 - .AGAACCTTCT. 1051 (93.87)
3 - .AGAACGTTCT. 944 (100.00)
3 - [GGAACTTTCT] 812 (87.10)
3 - [ATAAATTTCT] 99 (85.45)
4 + [AAAACATTTT] 1467 (87.41)
4 - [AAAATGTTTT] 1467 (87.41)
5 + [AGAAGGTTCA] 845 (85.55)
5 + [AGAATCTTCT] 952 (89.27)
5 + [AAAAACTTCT] 972 (86.43)
5 + .AGAAAATTCT. 1070 (91.96)
5 + .AGAAAATTCT. 1110 (91.96)
5 + .AGAAACTTCT. 1282 (90.42)
5 + [AGAATGTTCC] 1322 (85.95)
5 + [AGAAGATTCT] 1397 (89.27)
5 + .AGAAACTTCT. 1417 (90.42)
5 + [AAAAAATTCT] 1574 (87.96)
5 - [AGAATTTTTT] 1574 (87.96)
5 - .AGAAGTTTCT. 1417 (90.42)
5 - [AGAATCTTCT] 1397 (89.27)
5 - [GGAACATTCT] 1322 (85.95)
5 - .AGAAGTTTCT. 1282 (90.42)
5 - .AGAATTTTCT. 1110 (91.96)
5 - .AGAATTTTCT. 1070 (91.96)
5 - [AGAAGTTTTT] 972 (86.43)
5 - [AGAAGATTCT] 952 (89.27)
5 - [TGAACCTTCT] 845 (85.55)
6 + [AGATTGTTCT] 136 (85.64)
6 + .AGAACCTTCT. 500 (93.87)
6 + [AAAAATTTCT] 1454 (89.11)
6 - [AGAAATTTTT] 1454 (89.11)
6 - .AGAAGGTTCT. 500 (93.87)
6 - [AGAACAATCT] 136 (85.64)
7 + [AAAATGTTTT] 31 (87.41)
7 + [AGAAAGTTGT] 376 (88.27)
7 + [AAAAAGTTTT] 443 (88.56)
7 + [ACAACTTTCT] 1091 (88.27)
7 + .AGAACGTTCT. 1127 (100.00)
7 + [AAAAGGTTTT] 1367 (85.88)
7 - [AAAACCTTTT] 1367 (85.88)
7 - .AGAACGTTCT. 1127 (100.00)
7 - [AGAAAGTTGT] 1091 (88.27)
7 - [AAAACTTTTT] 443 (88.56)
7 - [ACAACTTTCT] 376 (88.27)
7 - [AAAACATTTT] 31 (87.41)
8 + [AGATTGTTCT] 443 (85.64)
8 - [AGAACAATCT] 443 (85.64)
10 + [AGAACGTTTA] 645 (87.69)
10 + [AGAACGTTTC] 654 (86.55)
10 + [AAAAAGTTTT] 1170 (88.56)
10 + [AGAAAGTTCG] 1286 (86.95)
10 - [CGAACTTTCT] 1286 (86.95)
10 - [AAAACTTTTT] 1170 (88.56)
10 - [GAAACGTTCT] 654 (86.55)
10 - [TAAACGTTCT] 645 (87.69)
11 + [AGAAGCTTCT] 105 (87.74)
11 + .AGAACGTTCT. 177 (100.00)
11 + [AGAAGCTTCT] 333 (87.74)
11 - [AGAAGCTTCT] 333 (87.74)
11 - .AGAACGTTCT. 177 (100.00)
11 - [AGAAGCTTCT] 105 (87.74)
12 + [AGAAGGTTTT] 146 (89.87)
12 + .AAAATGTTCT. 897 (91.41)
12 - .AGAACATTTT. 897 (91.41)
12 - [AAAACCTTCT] 146 (89.87)
15 + [AAAACTTTTT] 1046 (88.56)
15 + .AGAATGTTTT. 1262 (91.41)
15 + [ATAAAGTTCT] 1538 (88.90)
15 - [AGAACTTTAT] 1538 (88.90)
15 - .AAAACATTCT. 1262 (91.41)
15 - [AAAAAGTTTT] 1046 (88.56)
16 + .AGAACATTCT. 413 (95.40)
16 + [AAAACTTTTT] 1818 (88.56)
16 - [AAAAAGTTTT] 1818 (88.56)
16 - .AGAATGTTCT. 413 (95.40)
17 + .AGAATGTTCT. 98 (95.40)
17 + [CGAATGTTCT] 252 (85.80)
17 - [AGAACATTCG] 252 (85.80)
17 - .AGAACATTCT. 98 (95.40)
18 + .AGAAAATTCT. 71 (91.96)
18 + [AAAACCTTTT] 842 (85.88)
18 - [AAAAGGTTTT] 842 (85.88)
18 - .AGAATTTTCT. 71 (91.96)
22 + [AAAAACTTCT] 922 (86.43)
22 + [AAAAATTTTT] 1796 (85.12)
22 + .AAAATGTTCT. 1936 (91.41)
22 - .AGAACATTTT. 1936 (91.41)
22 - [AAAAATTTTT] 1796 (85.12)
22 - [AGAAGTTTTT] 922 (86.43)
23 + .AAAATGTTCT. 81 (91.41)
23 - .AGAACATTTT. 81 (91.41)
24 + [AAAACATTTT] 60 (87.41)
24 + [AGAAGGTTTT] 1060 (89.87)
24 + [TGAACGTTTT] 1736 (87.69)
24 - [AAAACGTTCA] 1736 (87.69)
24 - [AAAACCTTCT] 1060 (89.87)
24 - [AAAATGTTTT] 60 (87.41)
25 + [AGAAATTTTT] 129 (89.11)
25 - [AAAAATTTCT] 129 (89.11)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		297	26	27	36	|		32	0	0	0
2		86	29	237	34	|		4	0	28	0
3		340	16	14	16	|		32	0	0	0
4		333	15	10	28	|		32	0	0	0
5		83	199	42	62	|		5	14	4	9
6		62	42	199	83	|		9	4	14	5
7		28	10	15	333	|		0	0	0	32
8		16	14	16	340	|		0	0	0	32
9		34	237	29	86	|		0	28	0	4
10		36	27	26	297	|		0	0	0	32

---

GAATGTTCTAGA
TCTAGAACATTC

5 redundant motifs found:
AGAATGTTCTAG - GAAGGTTCTAGA - GAACCTTCTAGA - GAATCTTCTAGA - GAACGTTCTAGA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [AAATGTTTTAAA] 1070 (88.35)
3 + .GAAGGTTCTAGA. 1052 (93.88)
3 - [GCATCTTCTAGA] 1058 (86.39)
3 - [GAAATATCTAGA] 878 (86.08)
4 + [AAATCTTTTAGA] 52 (88.52)
4 - [GAATTTTCTGAA] 1981 (86.99)
4 - [CAATGTTCTGGA] 1496 (85.92)
4 - [AACTTTTCTAGA] 599 (85.06)
4 - [AAAAGTTCAAGA] 269 (86.11)
5 + .GAATCTTCTAGA. 953 (96.03)
5 + [AAAACTTCTAGA] 973 (88.89)
5 + [GAAAATTCTGGA] 1071 (85.85)
5 + [GAACCTTCTAGA] 1081 (89.50)
5 + [GAAACTTCCAGA] 1101 (85.65)
5 + [GAATCTTCCAGA] 1293 (89.88)
5 + [AAAACTTCTAGA] 1554 (88.89)
5 + [GAATCTTCCAAA] 1564 (85.74)
5 - [TAATGTTCTGGA] 1772 (85.92)
5 - .GAAGATTCTAGA. 1560 (91.37)
5 - .GAAGTTTCTAGA. 1414 (92.43)
5 - [GAATCTTCTTGA] 1394 (89.30)
5 - [GAAGATTCCAGA] 1289 (85.22)
5 - .GAATTTTCTGGA. 1107 (91.14)
5 - [CAAAATTCTAGA] 1087 (86.60)
5 - [GAAGGTTCCAGA] 1077 (87.73)
5 - [GAATTTTCTGAA] 1067 (86.99)
5 - .GAAATTTCTAGA. 959 (94.32)
5 - [AAATGTTTCAGA] 602 (86.34)
6 + [GATTGTTCTATA] 137 (86.89)
6 + [GAACCTTCTAGA] 501 (89.50)
6 + [AAAATTTCTAAA] 1455 (87.27)
6 + [TAATTTTCTACA] 1589 (85.31)
6 - [AAATTTTTTAAA] 1450 (86.90)
6 - [AAATATTCAAGA] 1184 (87.83)
6 - [TAATTTTCTACA] 361 (85.31)
7 + [GAACGTTCTCGA] 1128 (86.42)
10 + [GAAGCTTTTAGA] 558 (85.31)
10 - [AAACGTTCTAAA] 651 (86.42)
10 - [AAATGTTCTGGA] 107 (89.67)
11 + .GAACGTTCTAGA. 178 (93.47)
11 + .GAATGTTCGAGA. 272 (93.09)
11 + .GAATATTCCAGA. 324 (91.34)
11 + [GAAGCTTCTAGA] 334 (89.91)
11 - .GAAGGTTCTAGA. 184 (93.88)
11 - [GAACGTTCTCGA] 174 (86.42)
11 - .GAATATTCCAGA. 112 (91.34)
11 - [GAAGCTTCTAGA] 102 (89.91)
13 + .GAAATTTCTAGA. 333 (94.32)
13 - .GAATATTCGAGA. 212 (90.58)
15 + .GAATATTGTAGA. 668 (90.08)
15 + [AAATCTTTTAGA] 1188 (88.52)
15 + .GAATGTTTTAAA. 1263 (91.26)
15 - [GAATGATCTACA] 1014 (85.19)
16 - [GAATGTTCTATT] 410 (86.86)
17 + .GAATGTTCTAGA. 99 (100.00)
17 + .GAATGTTCTAGA. 253 (100.00)
17 - [GAACATTCTAAA] 95 (86.82)
18 - .GAATTTTCTAGA. 68 (98.55)
19 - .AAAAATTCTAGA. 675 (90.35)
21 + [GAATTTTCCACA] 367 (85.83)
21 - [GATTTTTCCAGA] 1073 (85.15)
22 + [GAATATTCAAAA] 1487 (86.60)
22 + .AAATGTTTTAGA. 1566 (92.49)
22 + .AAATGTTCTAAA. 1937 (92.94)
22 - [AAATATTTTAGA] 1758 (89.98)
22 - .GAATATTCTAAA. 1483 (93.35)
22 - [AAAAGTTTTAGA] 1416 (88.27)
23 + .AAATGTTCTAGA. 82 (97.09)
24 - .GAATTTTCTAGA. 1755 (98.55)
25 + [AAAACTTCTAGA] 1152 (88.89)
25 + [GAATATTCCATA] 1529 (85.48)
25 - [GAATATTCTAAT] 1525 (86.07)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		108	37	248	37	|		4	0	20	0
2		360	23	16	31	|		24	0	0	0
3		348	17	21	44	|		24	0	0	0
4		79	41	46	264	|		3	1	4	16
5		85	56	174	115	|		7	1	10	6
6		34	16	23	357	|		0	0	0	24
7		22	22	17	369	|		0	0	0	24
8		38	282	34	76	|		0	21	1	2
9		43	51	41	295	|		0	2	2	20
10		307	41	37	45	|		23	0	1	0
11		80	40	261	49	|		3	0	21	0
12		351	11	24	44	|		24	0	0	0

---

*** Interesting motifs (not highest-ranking) can also be :


AGGCGCCT
AGGCGCCT

0 redundant motifs found:


Best occurrences (match percentage):
Seq St oligo pos match
2 + .GGGCGCCT. 499 (90.09)
2 - .AGGCGCCC. 499 (90.09)
4 + .AGGCGCCT. 904 (100.00)
4 + [TGGCGCCT] 1525 (88.67)
4 + [CGGCGCCT] 1780 (87.38)
4 - [AGGCGCCG] 1780 (87.38)
4 - [AGGCGCCA] 1525 (88.67)
4 - .AGGCGCCT. 904 (100.00)
6 + .AGGCGCCT. 217 (100.00)
6 + .AGGTGCCT. 1127 (91.40)
6 - .AGGCACCT. 1127 (91.40)
6 - .AGGCGCCT. 217 (100.00)
7 + .AGGCGCCT. 1266 (100.00)
7 - .AGGCGCCT. 1266 (100.00)
15 + [AGCCGCCT] 389 (88.11)
15 - [AGGCGGCT] 389 (88.11)
16 + [ATGCGCCT] 1189 (89.58)
16 - [AGGCGCAT] 1189 (89.58)
19 + [ATGCGCCT] 474 (89.58)
19 - [AGGCGCAT] 474 (89.58)
20 + [AAGCGCCT] 223 (89.10)
20 + .AGGCACCT. 286 (91.40)
20 - .AGGTGCCT. 286 (91.40)
20 - [AGGCGCTT] 223 (89.10)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		101	6	11	8	|		11	0	1	0
2		9	4	103	10	|		0	0	12	0
3		8	7	100	11	|		0	0	12	0
4		17	89	7	13	|		0	10	0	2
5		13	7	89	17	|		2	0	10	0
6		11	100	7	8	|		0	12	0	0
7		10	103	4	9	|		0	12	0	0
8		8	11	6	101	|		0	1	0	11

---

CTTCTAGAAG
CTTCTAGAAG

5 redundant motifs found:
GTTCTAGAAC - ACCTTCTAGA - GTTCTAGAAG - TCTAGAAG - TTCTAGAA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [ATTCTGGAAG] 199 (85.84)
1 - [CTTCCAGAAT] 199 (85.84)
3 + .GTTCTAGAAG. 1056 (94.27)
3 - .CTTCTAGAAC. 1056 (94.27)
4 + .CTTTTAGAAA. 56 (90.32)
4 + [CTTCCAGAAC] 1494 (86.11)
4 - [GTTCTGGAAG] 1494 (86.11)
4 - .TTTCTAAAAG. 56 (90.32)
5 + .CTTCTAGAAA. 957 (96.87)
5 + [CTTCTAGATA] 977 (87.13)
5 + .CTTCTAGAAT. 1085 (94.01)
5 + [CTTCCAGAAA] 1105 (88.70)
5 + [CTTCTGGAAT] 1287 (85.84)
5 + .CTTCCAGAAG. 1297 (91.83)
5 + [CATCTAGAAA] 1412 (87.13)
5 + [CTTCTAAAAC] 1525 (87.73)
5 + .CTTCTAGAAT. 1558 (94.01)
5 - .ATTCTAGAAG. 1558 (94.01)
5 - [GTTTTAGAAG] 1525 (87.73)
5 - [TTTCTAGATG] 1412 (87.13)
5 - .CTTCTGGAAG. 1297 (91.83)
5 - [ATTCCAGAAG] 1287 (85.84)
5 - [TTTCTGGAAG] 1105 (88.70)
5 - .ATTCTAGAAG. 1085 (94.01)
5 - [TATCTAGAAG] 977 (87.13)
5 - .TTTCTAGAAG. 957 (96.87)
6 + .TTTCTAAAAG. 1459 (90.32)
6 - .CTTTTAGAAA. 1459 (90.32)
7 + [CTTATAGAAA] 1286 (87.40)
7 - [TTTCTATAAG] 1286 (87.40)
8 + [CTTTAAGAAG] 341 (85.50)
8 - [CTTCTTAAAG] 341 (85.50)
11 + .CTTCTAGAAG. 100 (100.00)
11 + [CTTCTGGAAT] 110 (85.84)
11 + [GTTCTAGAAC] 182 (88.55)
11 + [ATTCCAGAAG] 328 (85.84)
11 + .CTTCTAGAAG. 338 (100.00)
11 - .CTTCTAGAAG. 338 (100.00)
11 - [CTTCTGGAAT] 328 (85.84)
11 - [GTTCTAGAAC] 182 (88.55)
11 - [ATTCCAGAAG] 110 (85.84)
11 - .CTTCTAGAAG. 100 (100.00)
12 + [CTTCCAGAAA] 1262 (88.70)
12 - [TTTCTGGAAG] 1262 (88.70)
13 + .TTTCTAGAAA. 337 (93.74)
13 - .TTTCTAGAAA. 337 (93.74)
15 + [CTTTTAGAAC] 1192 (87.73)
15 - [GTTCTAAAAG] 1192 (87.73)
16 + .CTTCTCGAAG. 1664 (90.53)
16 - .CTTCGAGAAG. 1664 (90.53)
17 + .GTTCTAGAAG. 103 (94.27)
17 + .GTTCTAGAAA. 257 (91.14)
17 - .TTTCTAGAAC. 257 (91.14)
17 - .CTTCTAGAAC. 103 (94.27)
18 + .TTTCTAGAAA. 66 (93.74)
18 - .TTTCTAGAAA. 66 (93.74)
19 + [ATTCTAGAAT] 673 (88.02)
19 - [ATTCTAGAAT] 673 (88.02)
21 + [ATTCTTGAAG] 252 (86.06)
21 - [CTTCAAGAAT] 252 (86.06)
22 + [CTTCTTGAAC] 951 (86.32)
22 - [GTTCAAGAAG] 951 (86.32)
24 + [TTTCTCGAAG] 1008 (87.40)
24 + .CTACTAGAAG. 1279 (90.25)
24 + .TTTCTAGAAA. 1753 (93.74)
24 - .TTTCTAGAAA. 1753 (93.74)
24 - .CTTCTAGTAG. 1279 (90.25)
24 - [CTTCGAGAAA] 1008 (87.40)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		44	197	47	90	|		2	17	3	10
2		27	17	25	309	|		0	0	0	32
3		28	13	16	321	|		1	0	0	31
4		26	278	20	54	|		0	30	0	2
5		38	36	26	278	|		0	1	1	30
6		278	26	36	38	|		30	1	1	0
7		54	20	278	26	|		2	0	30	0
8		321	16	13	28	|		31	0	0	1
9		309	25	17	27	|		32	0	0	0
10		90	47	197	44	|		10	3	17	2

---

GTCTAGAC
GTCTAGAC

2 redundant motifs found:
TTCTAGAA - TCTAGA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .GTCTAGAA. 797 (96.91)
1 - .TTCTAGAC. 797 (96.91)
2 + .GTCTAGAA. 464 (96.91)
2 + [GTATAGAA] 760 (85.77)
2 + [TTTTAGAC] 1056 (89.34)
2 - [GTCTAAAA] 1056 (89.34)
2 - [TTCTATAC] 760 (85.77)
2 - .TTCTAGAC. 464 (96.91)
3 + [TTCTAAAA] 210 (86.25)
3 + [TTCTAGAT] 877 (89.21)
3 + .TTCTAGAA. 1057 (93.82)
3 - .TTCTAGAA. 1057 (93.82)
3 - [ATCTAGAA] 877 (89.21)
3 - [TTTTAGAA] 210 (86.25)
4 + [TTCTAGAG] 44 (86.75)
4 + [TTTTAGAA] 57 (86.25)
4 + [TTCTTGAC] 349 (85.50)
4 + [CTCTAGAA] 598 (86.75)
4 + [TTCCAGAC] 1242 (85.18)
4 + .GTCTAGAC. 1251 (100.00)
4 + [TTCTTGAC] 1907 (85.50)
4 - [GTCAAGAA] 1907 (85.50)
4 - .GTCTAGAC. 1251 (100.00)
4 - [GTCTGGAA] 1242 (85.18)
4 - [TTCTAGAG] 598 (86.75)
4 - [GTCAAGAA] 349 (85.50)
4 - [TTCTAAAA] 57 (86.25)
4 - [CTCTAGAA] 44 (86.75)
5 + [GTTTAGAA] 899 (89.34)
5 + .TTCTAGAA. 958 (93.82)
5 + [TTCTAGAT] 978 (89.21)
5 + .TTCTAGAA. 1086 (93.82)
5 + [ATCTAGAA] 1413 (89.21)
5 + [TTCTAAAA] 1526 (86.25)
5 + [TTCAAGAC] 1544 (85.50)
5 + .TTCTAGAA. 1559 (93.82)
5 - .TTCTAGAA. 1559 (93.82)
5 - [GTCTTGAA] 1544 (85.50)
5 - [TTTTAGAA] 1526 (86.25)
5 - [TTCTAGAT] 1413 (89.21)
5 - .TTCTAGAA. 1086 (93.82)
5 - [ATCTAGAA] 978 (89.21)
5 - .TTCTAGAA. 958 (93.82)
5 - [TTCTAAAC] 899 (89.34)
6 + .TTCTAGAC. 506 (96.91)
6 + [GTCTGGAC] 1018 (88.27)
6 + [TTCTAGAT] 1060 (89.21)
6 + [TTCTAAAA] 1460 (86.25)
6 - [TTTTAGAA] 1460 (86.25)
6 - [ATCTAGAA] 1060 (89.21)
6 - [GTCCAGAC] 1018 (88.27)
6 - .GTCTAGAA. 506 (96.91)
7 + .GTTTAGAC. 310 (92.43)
7 + [GTCTATAC] 955 (88.86)
7 + [TTTTAGAC] 1461 (89.34)
7 - [GTCTAAAA] 1461 (89.34)
7 - [GTATAGAC] 955 (88.86)
7 - .GTCTAAAC. 310 (92.43)
8 + [TTTTAGAC] 334 (89.34)
8 - [GTCTAAAA] 334 (89.34)
10 + [TTTTAGAC] 563 (89.34)
10 + [GTTTAGAA] 650 (89.34)
10 + .GTCTAGAA. 1043 (96.91)
10 - .TTCTAGAC. 1043 (96.91)
10 - [TTCTAAAC] 650 (89.34)
10 - [GTCTAAAA] 563 (89.34)
11 + .TTCTAGAA. 101 (93.82)
11 + .TTCTAGAA. 183 (93.82)
11 + .TTCTAGAA. 339 (93.82)
11 - .TTCTAGAA. 339 (93.82)
11 - .TTCTAGAA. 183 (93.82)
11 - .TTCTAGAA. 101 (93.82)
12 + [TTCTAGAG] 909 (86.75)
12 - [CTCTAGAA] 909 (86.75)
13 + .TTCTAGAA. 338 (93.82)
13 + .GTCTAAAC. 413 (92.43)
13 + .GTCTAAAC. 422 (92.43)
13 - .GTTTAGAC. 422 (92.43)
13 - .GTTTAGAC. 413 (92.43)
13 - .TTCTAGAA. 338 (93.82)
15 + [TTTTAGAA] 1193 (86.25)
15 - [TTCTAAAA] 1193 (86.25)
16 + .GTCTAGAT. 1602 (92.30)
16 - .ATCTAGAC. 1602 (92.30)
17 + [GTTTAGAA] 94 (89.34)
17 + .TTCTAGAA. 104 (93.82)
17 + .TTCTAGAA. 258 (93.82)
17 - .TTCTAGAA. 258 (93.82)
17 - .TTCTAGAA. 104 (93.82)
17 - [TTCTAAAC] 94 (89.34)
18 + .TTCTAGAA. 67 (93.82)
18 + [TTCTAAAC] 278 (89.34)
18 - [GTTTAGAA] 278 (89.34)
18 - .TTCTAGAA. 67 (93.82)
19 + [TTCTAAAA] 596 (86.25)
19 + .TTCTAGAA. 674 (93.82)
19 - .TTCTAGAA. 674 (93.82)
19 - [TTTTAGAA] 596 (86.25)
20 + [GTCTCGAA] 31 (86.07)
20 + [GTCCAGAA] 431 (85.18)
20 + [TTTTAGAC] 648 (89.34)
20 - [GTCTAAAA] 648 (89.34)
20 - [TTCTGGAC] 431 (85.18)
20 - [TTCGAGAC] 31 (86.07)
21 + [GTCTAAAA] 346 (89.34)
21 - [TTTTAGAC] 346 (89.34)
22 + [TTCTTGAC] 215 (85.50)
22 + [GTCTCGAA] 1047 (86.07)
22 - [TTCGAGAC] 1047 (86.07)
22 - [GTCAAGAA] 215 (85.50)
23 + .TTCTAGAC. 87 (96.91)
23 - .GTCTAGAA. 87 (96.91)
24 + .GTCTAGAC. 52 (100.00)
24 + [TTCTTGAC] 256 (85.50)
24 + [TTCTTGAC] 1361 (85.50)
24 + .TTCTAGAA. 1754 (93.82)
24 - .TTCTAGAA. 1754 (93.82)
24 - [GTCAAGAA] 1361 (85.50)
24 - [GTCAAGAA] 256 (85.50)
24 - .GTCTAGAC. 52 (100.00)
25 + [GTCTAAAA] 239 (89.34)
25 + .GTTTAGAC. 422 (92.43)
25 + [TTCTAGAT] 1157 (89.21)
25 - [ATCTAGAA] 1157 (89.21)
25 - .GTCTAAAC. 422 (92.43)
25 - [TTTTAGAC] 239 (89.34)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		23	13	137	67	|		1	0	18	31
2		6	7	10	217	|		0	0	0	50
3		14	185	9	32	|		0	46	0	4
4		14	13	16	197	|		0	0	0	50
5		197	16	13	14	|		50	0	0	0
6		32	9	185	14	|		4	0	46	0
7		217	10	7	6	|		50	0	0	0
8		67	137	13	23	|		31	18	0	1

---

GTTCTAGAAC
GTTCTAGAAC

3 redundant motifs found:
GTTCTAGAAG - CTTCTAGAAG - TTCTAGAA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [GTTTTAAAAC] 472 (88.98)
1 + [TGTCTAGAAC] 796 (86.25)
1 + [GTTCGAGAAG] 1475 (87.38)
1 - [CTTCTCGAAC] 1475 (87.38)
1 - [GTTCTAGACA] 796 (86.25)
1 - [GTTTTAAAAC] 472 (88.98)
2 + [GGTCTAGAAG] 463 (85.06)
2 - [CTTCTAGACC] 463 (85.06)
3 + [ATTCTAAAAA] 209 (85.93)
3 + .GTTCTAGAAG. 1056 (95.74)
3 - .CTTCTAGAAC. 1056 (95.74)
3 - [TTTTTAGAAT] 209 (85.93)
4 + [CTTTTAGAAA] 56 (87.16)
4 + [TTTCAAGAAC] 1024 (88.81)
4 + [CTTCCAGAAC] 1494 (87.12)
4 - [GTTCTGGAAG] 1494 (87.12)
4 - [GTTCTTGAAA] 1024 (88.81)
4 - [TTTCTAAAAG] 56 (87.16)
5 + .CTTCTAGAAA. 957 (92.67)
5 + [ATTCTGGAAC] 1075 (85.89)
5 + .CTTCTAGAAT. 1085 (90.25)
5 + [ATTCTACAAC] 1402 (85.52)
5 + .CTTCTAAAAC. 1525 (90.23)
5 + .CTTCTAGAAT. 1558 (90.25)
5 + .GTTCCAGAAC. 1770 (91.38)
5 - .GTTCTGGAAC. 1770 (91.38)
5 - .ATTCTAGAAG. 1558 (90.25)
5 - .GTTTTAGAAG. 1525 (90.23)
5 - [GTTGTAGAAT] 1402 (85.52)
5 - .ATTCTAGAAG. 1085 (90.25)
5 - [GTTCCAGAAT] 1075 (85.89)
5 - .TTTCTAGAAG. 957 (92.67)
6 + [GTTCTAGATT] 1059 (86.21)
6 + [GTTTTAAAAA] 1448 (85.91)
6 + [TTTCTAAAAG] 1459 (87.16)
6 - [CTTTTAGAAA] 1459 (87.16)
6 - [TTTTTAAAAC] 1448 (85.91)
6 - [AATCTAGAAC] 1059 (86.21)
7 + .GTTCTCGAAC. 1132 (91.64)
7 - .GTTCGAGAAC. 1132 (91.64)
9 + [GTTTTTGAAC] 193 (86.37)
9 - [GTTCAAAAAC] 193 (86.37)
10 + .GTTCTTGAAC. 30 (91.88)
10 + [ATTCCAGAAC] 105 (85.89)
10 + [TTTCGAGAAA] 335 (85.50)
10 - [TTTCTCGAAA] 335 (85.50)
10 - [GTTCTGGAAT] 105 (85.89)
10 - .GTTCAAGAAC. 30 (91.88)
11 + .CTTCTAGAAG. 100 (91.48)
11 + [ATTCGAGAAC] 172 (86.15)
11 + .GTTCTAGAAC. 182 (100.00)
11 + [GTTCGAGAAA] 276 (88.57)
11 + .CTTCTAGAAG. 338 (91.48)
11 - .CTTCTAGAAG. 338 (91.48)
11 - [TTTCTCGAAC] 276 (88.57)
11 - .GTTCTAGAAC. 182 (100.00)
11 - [GTTCTCGAAT] 172 (86.15)
11 - .CTTCTAGAAG. 100 (91.48)
13 + .TTTCTAGAAA. 337 (93.86)
13 - .TTTCTAGAAA. 337 (93.86)
15 + [GTTTTAAAAA] 1039 (85.91)
15 + .CTTTTAGAAC. 1192 (90.23)
15 + [GTTTTAAAAA] 1267 (85.91)
15 - [TTTTTAAAAC] 1267 (85.91)
15 - .GTTCTAAAAG. 1192 (90.23)
15 - [TTTTTAAAAC] 1039 (85.91)
17 + .GTTCTAGAAG. 103 (95.74)
17 + .GTTCTAGAAA. 257 (96.93)
17 - .TTTCTAGAAC. 257 (96.93)
17 - .CTTCTAGAAC. 103 (95.74)
18 + .TTTCTAGAAA. 66 (93.86)
18 - .TTTCTAGAAA. 66 (93.86)
19 + .GTTCTAAAAA. 595 (91.42)
19 + [ATTCTAGAAT] 673 (89.02)
19 - [ATTCTAGAAT] 673 (89.02)
19 - .TTTTTAGAAC. 595 (91.42)
22 + [CTTCTTGAAC] 951 (87.63)
22 + [GTTTTAGATC] 1570 (86.19)
22 - [GATCTAAAAC] 1570 (86.19)
22 - [GTTCAAGAAG] 951 (87.63)
23 + [GTTCTAGACA] 86 (86.25)
23 - [TGTCTAGAAC] 86 (86.25)
24 + [TTTCTAGTAC] 484 (86.20)
24 + .TTTCTAGAAA. 1753 (93.86)
24 - .TTTCTAGAAA. 1753 (93.86)
24 - [GTACTAGAAA] 484 (86.20)
25 + [GTTCTACAAG] 1833 (86.76)
25 - [CTTGTAGAAC] 1833 (86.76)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		43	59	176	80	|		2	11	14	9
2		35	9	19	295	|		0	0	0	36
3		20	13	11	314	|		0	0	0	36
4		21	251	25	61	|		0	33	0	3
5		33	29	31	265	|		1	1	1	33
6		265	31	29	33	|		33	1	1	1
7		61	25	251	21	|		3	0	33	0
8		314	11	13	20	|		36	0	0	0
9		295	19	9	35	|		36	0	0	0
10		80	176	59	43	|		9	14	11	2

---

GAACGTTC
GAACGTTC

3 redundant motifs found:
AGAACGTTCT - GGACGTCC - GAATATTC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [AAACTTTC] 901 (88.52)
1 + [AAACTTTC] 1036 (88.52)
1 - [GAAAGTTT] 1036 (88.52)
1 - [GAAAGTTT] 901 (88.52)
3 + [AAATGTTC] 507 (88.93)
3 + .AAACGTTC. 785 (93.12)
3 + .GAAAGTTC. 813 (95.40)
3 + .GAACGTTC. 945 (100.00)
3 + .GAAGGTTC. 1052 (92.45)
3 - .GAACCTTC. 1052 (92.45)
3 - .GAACGTTC. 945 (100.00)
3 - .GAACTTTC. 813 (95.40)
3 - .GAACGTTT. 785 (93.12)
3 - [GAACATTT] 507 (88.93)
4 + [GAACTTTT] 273 (88.52)
4 + [AAAAGTTC] 604 (88.52)
4 + [GAAGTTTC] 1001 (87.85)
4 + [GAACATTG] 1500 (85.06)
4 + .GAAAATTC. 1985 (91.22)
4 - .GAATTTTC. 1985 (91.22)
4 - [CAATGTTC] 1500 (85.06)
4 - [GAAACTTC] 1001 (87.85)
4 - [GAACTTTT] 604 (88.52)
4 - [AAAAGTTC] 273 (88.52)
5 + .GAAGGTTC. 846 (92.45)
5 + [GAATCTTC] 953 (88.26)
5 + .GAAATTTC. 963 (90.81)
5 + .GAAAATTC. 1071 (91.22)
5 + .GAACCTTC. 1081 (92.45)
5 + [GAAACTTC] 1101 (87.85)
5 + .GAAAATTC. 1111 (91.22)
5 + [GAAACTTC] 1283 (87.85)
5 + [GAATCTTC] 1293 (88.26)
5 + .GAATGTTC. 1323 (95.81)
5 + [GAAGATTC] 1398 (88.26)
5 + [GAAACTTC] 1418 (87.85)
5 + [GAATCTTC] 1564 (88.26)
5 + [GAAACTTC] 1876 (87.85)
5 - [GAAGTTTC] 1876 (87.85)
5 - [GAAGATTC] 1564 (88.26)
5 - [GAAGTTTC] 1418 (87.85)
5 - [GAATCTTC] 1398 (88.26)
5 - .GAACATTC. 1323 (95.81)
5 - [GAAGATTC] 1293 (88.26)
5 - [GAAGTTTC] 1283 (87.85)
5 - .GAATTTTC. 1111 (91.22)
5 - [GAAGTTTC] 1101 (87.85)
5 - .GAAGGTTC. 1081 (92.45)
5 - .GAATTTTC. 1071 (91.22)
5 - .GAAATTTC. 963 (90.81)
5 - [GAAGATTC] 953 (88.26)
5 - .GAACCTTC. 846 (92.45)
6 + .GAATTTTC. 35 (91.22)
6 + .GAATTTTC. 320 (91.22)
6 + .GAACCTTC. 501 (92.45)
6 + [AAACTTTC] 1515 (88.52)
6 - [GAAAGTTT] 1515 (88.52)
6 - .GAAGGTTC. 501 (92.45)
6 - .GAAAATTC. 320 (91.22)
6 - .GAAAATTC. 35 (91.22)
7 + [GAACATTG] 467 (85.06)
7 + .GAACGTTC. 1128 (100.00)
7 + .GAACGTTT. 1138 (93.12)
7 - .AAACGTTC. 1138 (93.12)
7 - .GAACGTTC. 1128 (100.00)
7 - [CAATGTTC] 467 (85.06)
9 + .GAATATTC. 65 (91.62)
9 - .GAATATTC. 65 (91.62)
10 + [GAACATTT] 111 (88.93)
10 + .GAACGTTT. 646 (93.12)
10 + .GAACGTTT. 655 (93.12)
10 + [AAAGGTTC] 978 (85.57)
10 + .GAAAGTTC. 1287 (95.40)
10 + [GAAGATTC] 1385 (88.26)
10 + [TAACGTTC] 1460 (87.78)
10 + [AAACTTTC] 1858 (88.52)
10 - [GAAAGTTT] 1858 (88.52)
10 - [GAACGTTA] 1460 (87.78)
10 - [GAATCTTC] 1385 (88.26)
10 - .GAACTTTC. 1287 (95.40)
10 - [GAACCTTT] 978 (85.57)
10 - .AAACGTTC. 655 (93.12)
10 - .AAACGTTC. 646 (93.12)
10 - [AAATGTTC] 111 (88.93)
11 + [GAACTTTT] 30 (88.52)
11 + .GAATATTC. 116 (91.62)
11 + .GAACGTTC. 178 (100.00)
11 + .GAACCTTC. 188 (92.45)
11 + .GAATGTTC. 272 (95.81)
11 + .GAATATTC. 324 (91.62)
11 + [AAAAGTTC] 410 (88.52)
11 - [GAACTTTT] 410 (88.52)
11 - .GAATATTC. 324 (91.62)
11 - .GAACATTC. 272 (95.81)
11 - .GAAGGTTC. 188 (92.45)
11 - .GAACGTTC. 178 (100.00)
11 - .GAATATTC. 116 (91.62)
11 - [AAAAGTTC] 30 (88.52)
12 + [GAAGGTTT] 147 (85.57)
12 + [AAACGTTT] 269 (86.24)
12 + [AAATGTTC] 898 (88.93)
12 + .GAAATTTC. 942 (90.81)
12 + .GAAATTTC. 976 (90.81)
12 + [AAATGTTC] 1269 (88.93)
12 - [GAACATTT] 1269 (88.93)
12 - .GAAATTTC. 976 (90.81)
12 - .GAAATTTC. 942 (90.81)
12 - [GAACATTT] 898 (88.93)
12 - [AAACGTTT] 269 (86.24)
12 - [AAACCTTC] 147 (85.57)
13 + [GAACGTTA] 94 (87.78)
13 + .GAATATTC. 216 (91.62)
13 + .GAAATTTC. 333 (90.81)
13 - .GAAATTTC. 333 (90.81)
13 - .GAATATTC. 216 (91.62)
13 - [TAACGTTC] 94 (87.78)
15 + [GAAGGTTT] 874 (85.57)
15 + [GAACTTTT] 1070 (88.52)
15 + [GAATGTTT] 1263 (88.93)
15 - [AAACATTC] 1263 (88.93)
15 - [AAAAGTTC] 1070 (88.52)
15 - [AAACCTTC] 874 (85.57)
16 + .GAATTTTC. 128 (91.22)
16 + [GAACATTT] 236 (88.93)
16 + .GAACATTC. 414 (95.81)
16 + [GAATCTTC] 1580 (88.26)
16 - [GAAGATTC] 1580 (88.26)
16 - .GAATGTTC. 414 (95.81)
16 - [AAATGTTC] 236 (88.93)
16 - .GAAAATTC. 128 (91.22)
17 + .GAATGTTC. 99 (95.81)
17 + [CAATGTTC] 208 (85.06)
17 + .GAATGTTC. 253 (95.81)
17 + [CAACATTC] 310 (85.06)
17 - [GAATGTTG] 310 (85.06)
17 - .GAACATTC. 253 (95.81)
17 - [GAACATTG] 208 (85.06)
17 - .GAACATTC. 99 (95.81)
18 + .GAAAATTC. 72 (91.22)
18 + [CAACATTC] 128 (85.06)
18 + .GAATTTTC. 708 (91.22)
18 - .GAAAATTC. 708 (91.22)
18 - [GAATGTTG] 128 (85.06)
18 - .GAATTTTC. 72 (91.22)
21 + [AAACGTTT] 326 (86.24)
21 + .GAATTTTC. 367 (91.22)
21 + [AAATGTTC] 1450 (88.93)
21 + [AAACTTTC] 1706 (88.52)
21 - [GAAAGTTT] 1706 (88.52)
21 - [GAACATTT] 1450 (88.93)
21 - .GAAAATTC. 367 (91.22)
21 - [AAACGTTT] 326 (86.24)
22 + .GAATATTC. 1487 (91.62)
22 + [AAATGTTC] 1937 (88.93)
22 - [GAACATTT] 1937 (88.93)
22 - .GAATATTC. 1487 (91.62)
23 + [GAACATTG] 67 (85.06)
23 + [AAATGTTC] 82 (88.93)
23 + [GAACTTTT] 303 (88.52)
23 + .GAATTTTC. 419 (91.22)
23 - .GAAAATTC. 419 (91.22)
23 - [AAAAGTTC] 303 (88.52)
23 - [GAACATTT] 82 (88.93)
23 - [CAATGTTC] 67 (85.06)
24 + [GAACATTT] 684 (88.93)
24 + [GAAGGTTT] 1061 (85.57)
24 + [GAAACTTC] 1222 (87.85)
24 + .GAACGTTT. 1737 (93.12)
24 + .GAAAATTC. 1759 (91.22)
24 - .GAATTTTC. 1759 (91.22)
24 - .AAACGTTC. 1737 (93.12)
24 - [GAAGTTTC] 1222 (87.85)
24 - [AAACCTTC] 1061 (85.57)
24 - [AAATGTTC] 684 (88.93)
25 + .GAATGTTC. 388 (95.81)
25 + .GAAATTTC. 522 (90.81)
25 + [AAACGTTT] 532 (86.24)
25 + .GAATTTTC. 840 (91.22)
25 + .GAACTTTC. 1465 (95.40)
25 + .GAATATTC. 1529 (91.62)
25 - .GAATATTC. 1529 (91.62)
25 - .GAAAGTTC. 1465 (95.40)
25 - .GAAAATTC. 840 (91.22)
25 - [AAACGTTT] 532 (86.24)
25 - .GAAATTTC. 522 (90.81)
25 - .GAACATTC. 388 (95.81)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		51	21	247	15	|		5	0	85	0
2		305	9	10	10	|		90	0	0	0
3		302	9	9	14	|		90	0	0	0
4		61	175	31	67	|		25	30	5	30
5		67	31	175	61	|		30	5	30	25
6		14	9	9	302	|		0	0	0	90
7		10	10	9	305	|		0	0	0	90
8		15	247	21	51	|		0	85	0	5

---

GAACCTTCTAGA
TCTAGAAGGTTC

7 redundant motifs found:
AGAACCTTCTAG - GAAGGTTCTAGA - GAATCTTCTAGA - GAACGTTCTAGA - GAATGTTCTAGA - ACCTTCTAGA - AACCTTCTAG -

Best occurrences (match percentage):
Seq St oligo pos match
2 + [AAACATTTTAGA] 1051 (88.39)
3 + .GAAGGTTCTAGA. 1052 (90.79)
3 - [GCATCTTCTAGA] 1058 (87.87)
3 - .GAACCTTCTACA. 1048 (93.30)
3 - [GAAATATCTAGA] 878 (87.52)
3 - .GAACTTTCTGGA. 809 (90.11)
4 + [AAATCTTTTAGA] 52 (88.68)
5 + [TAAACTTCGAGA] 943 (85.13)
5 + .GAATCTTCTAGA. 953 (97.24)
5 + .AAAACTTCTAGA. 973 (93.89)
5 + [GAAAATTCTGGA] 1071 (87.34)
5 + .GAACCTTCTAGA. 1081 (100.00)
5 + .GAAACTTCCAGA. 1101 (91.96)
5 + .GAAACTTCTGGA. 1283 (90.39)
5 + .GAATCTTCCAGA. 1293 (91.42)
5 + [GAAGATTCTACA] 1398 (85.94)
5 + .GAAACTTCTGGA. 1418 (90.39)
5 + .AAAACTTCTAGA. 1554 (93.89)
5 + [GAATCTTCCAAA] 1564 (86.68)
5 - .GAAGATTCTAGA. 1560 (92.64)
5 - .GAAGTTTCTAGA. 1414 (93.19)
5 - [GAATCTTCTTGA] 1394 (89.63)
5 - [GAAGATTCCAGA] 1289 (86.82)
5 - [GAATTTTCTGGA] 1107 (87.35)
5 - [CAAAATTCTAGA] 1087 (85.77)
5 - .GAAATTTCTAGA. 959 (95.27)
5 - [GAAGATTCTCGA] 949 (85.14)
6 + .GAACCTTCTAGA. 501 (100.00)
6 + [AAAATTTCTAAA] 1455 (86.64)
6 - [GAAGCTTTTAAA] 1856 (86.27)
7 + [GAACGTTCTCGA] 1128 (87.61)
10 + [GAAACTTTTCGA] 329 (85.61)
10 + .GAAGCTTTTAGA. 558 (91.02)
10 - [AAACGTTCTAAA] 651 (86.47)
11 + [GAAGCTTCTGGA] 106 (88.30)
11 + .GAACGTTCTAGA. 178 (95.10)
11 + [GAATGTTCGAGA] 272 (85.66)
11 + [GAATATTCCAGA] 324 (88.37)
11 + .GAAGCTTCTAGA. 334 (95.69)
11 - [GAAGCTTCTGGA] 330 (88.30)
11 - .GAAGGTTCTAGA. 184 (90.79)
11 - [GAACGTTCTCGA] 174 (87.61)
11 - [GAATATTCCAGA] 112 (88.37)
11 - .GAAGCTTCTAGA. 102 (95.69)
13 + .GAAATTTCTAGA. 333 (95.27)
13 - [GAATATTCGAGA] 212 (87.51)
15 + [GAATATTGTAGA] 668 (85.80)
15 + [AAATCTTTTAGA] 1188 (88.68)
15 - [AAACATTCTAAA] 1259 (88.32)
17 + .GAATGTTCTAGA. 99 (92.34)
17 + .GAATGTTCTAGA. 253 (92.34)
17 - .GGACCTTCTAGA. 105 (91.38)
17 - .GAACATTCTAAA. 95 (92.20)
17 - [TAAACTTCAAGA] 1 (85.75)
18 + [GAAAATTCTAGG] 72 (85.54)
18 - .GAATTTTCTAGA. 68 (94.74)
19 - .AAAAATTCTAGA. 675 (90.84)
22 - [AAATATTTTAGA] 1758 (85.63)
22 - [GAATATTCTAAA] 1483 (89.44)
23 + [AAATGTTCTAGA] 82 (88.46)
24 - .GAATTTTCTAGA. 1755 (94.74)
25 + .AAAACTTCTAGA. 1152 (93.89)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		76	18	229	42	|		4	0	25	0
2		301	21	26	17	|		28	0	1	0
3		306	15	13	31	|		29	0	0	0
4		85	160	47	73	|		9	7	7	6
5		71	169	42	83	|		3	15	5	6
6		33	13	20	299	|		0	0	0	29
7		21	23	13	308	|		0	0	0	29
8		27	249	23	66	|		0	28	0	1
9		43	46	36	240	|		0	2	0	27
10		269	32	33	31	|		26	0	3	0
11		61	35	235	34	|		1	1	27	0
12		299	19	22	25	|		29	0	0	0

---

TTCTAGAA
TTCTAGAA

6 redundant motifs found:
GTTCTAGAAG - GTTCTAGAAC - CTTCTAGAAG - TCTAGAAG - GTCTAGAC - TCTAGA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TTCTGGAA] 200 (89.96)
1 + [TTCAAAAA] 330 (86.29)
1 + [TTTTAAAA] 473 (88.84)
1 + [GTCTAGAA] 797 (86.66)
1 + .TTCGAGAA. 1476 (90.03)
1 + [TTTAAGAA] 1601 (86.29)
1 - [TTCTTAAA] 1601 (86.29)
1 - .TTCTCGAA. 1476 (90.03)
1 - [TTCTAGAC] 797 (86.66)
1 - [TTTTAAAA] 473 (88.84)
1 - [TTTTTGAA] 330 (86.29)
1 - [TTCCAGAA] 200 (89.96)
2 + [TTTTAAAA] 155 (88.84)
2 + [GTCTAGAA] 464 (86.66)
2 + [TTCTACAA] 578 (89.71)
2 + [TTTTAAAA] 1031 (88.84)
2 - [TTTTAAAA] 1031 (88.84)
2 - [TTGTAGAA] 578 (89.71)
2 - [TTCTAGAC] 464 (86.66)
2 - [TTTTAAAA] 155 (88.84)
3 + [TTTTTGAA] 55 (86.29)
3 + .TTCTAAAA. 210 (94.42)
3 + [TTCAAAAA] 229 (86.29)
3 + [TTCAAAAA] 416 (86.29)
3 + [TTCTAGAT] 877 (88.21)
3 + [TTGTAGAA] 1047 (89.71)
3 + .TTCTAGAA. 1057 (100.00)
3 - .TTCTAGAA. 1057 (100.00)
3 - [TTCTACAA] 1047 (89.71)
3 - [ATCTAGAA] 877 (88.21)
3 - [TTTTTGAA] 416 (86.29)
3 - [TTTTTGAA] 229 (86.29)
3 - .TTTTAGAA. 210 (94.42)
3 - [TTCAAAAA] 55 (86.29)
4 + [TTCTAGAG] 44 (85.86)
4 + .TTTTAGAA. 57 (94.42)
4 + [CTCTAGAA] 598 (85.86)
4 + .TTCAAGAA. 1025 (91.87)
4 + [TTCCAGAA] 1495 (89.96)
4 - [TTCTGGAA] 1495 (89.96)
4 - .TTCTTGAA. 1025 (91.87)
4 - [TTCTAGAG] 598 (85.86)
4 - .TTCTAAAA. 57 (94.42)
4 - [CTCTAGAA] 44 (85.86)
5 + .TTCGAGAA. 948 (90.03)
5 + .TTCTAGAA. 958 (100.00)
5 + [TTCTAGAT] 978 (88.21)
5 + [TTCTGGAA] 1076 (89.96)
5 + .TTCTAGAA. 1086 (100.00)
5 + [TTCCAGAA] 1106 (89.96)
5 + [TTCTGGAA] 1288 (89.96)
5 + [TTCCAGAA] 1298 (89.96)
5 + [TTCTACAA] 1403 (89.71)
5 + [ATCTAGAA] 1413 (88.21)
5 + .TTCTAAAA. 1526 (94.42)
5 + .TTCTAGAA. 1559 (100.00)
5 + [TTCCAGAA] 1771 (89.96)
5 - [TTCTGGAA] 1771 (89.96)
5 - .TTCTAGAA. 1559 (100.00)
5 - .TTTTAGAA. 1526 (94.42)
5 - [TTCTAGAT] 1413 (88.21)
5 - [TTGTAGAA] 1403 (89.71)
5 - [TTCTGGAA] 1298 (89.96)
5 - [TTCCAGAA] 1288 (89.96)
5 - [TTCTGGAA] 1106 (89.96)
5 - .TTCTAGAA. 1086 (100.00)
5 - [TTCCAGAA] 1076 (89.96)
5 - [ATCTAGAA] 978 (88.21)
5 - .TTCTAGAA. 958 (100.00)
5 - .TTCTCGAA. 948 (90.03)
6 + [TTCTATAA] 142 (89.71)
6 + [TTCTAGAC] 506 (86.66)
6 + [TTCTAGAT] 1060 (88.21)
6 + [TTTTAAAA] 1449 (88.84)
6 + .TTCTAAAA. 1460 (94.42)
6 + [TTTTAAAA] 1855 (88.84)
6 - [TTTTAAAA] 1855 (88.84)
6 - .TTTTAGAA. 1460 (94.42)
6 - [TTTTAAAA] 1449 (88.84)
6 - [ATCTAGAA] 1060 (88.21)
6 - [GTCTAGAA] 506 (86.66)
6 - [TTATAGAA] 142 (89.71)
7 + [TTATAGAA] 372 (89.71)
7 + [TTTTTGAA] 508 (86.29)
7 + [TTTTAAAA] 581 (88.84)
7 + .TTCTCGAA. 1133 (90.03)
7 + [TTATAGAA] 1287 (89.71)
7 - [TTCTATAA] 1287 (89.71)
7 - .TTCGAGAA. 1133 (90.03)
7 - [TTTTAAAA] 581 (88.84)
7 - [TTCAAAAA] 508 (86.29)
7 - [TTCTATAA] 372 (89.71)
8 + [TTTAAGAA] 342 (86.29)
8 - [TTCTTAAA] 342 (86.29)
9 + [TTTTTGAA] 21 (86.29)
9 + [TTTTTGAA] 194 (86.29)
9 - [TTCAAAAA] 194 (86.29)
9 - [TTCAAAAA] 21 (86.29)
10 + .TTCTTGAA. 31 (91.87)
10 + [TTCCAGAA] 106 (89.96)
10 + .TTCGAGAA. 336 (90.03)
10 + [GTCTAGAA] 1043 (86.66)
10 + [TTTTAAAA] 1521 (88.84)
10 + [TTCTTAAA] 1764 (86.29)
10 - [TTTAAGAA] 1764 (86.29)
10 - [TTTTAAAA] 1521 (88.84)
10 - [TTCTAGAC] 1043 (86.66)
10 - .TTCTCGAA. 336 (90.03)
10 - [TTCTGGAA] 106 (89.96)
10 - .TTCAAGAA. 31 (91.87)
11 + .TTCTAGAA. 101 (100.00)
11 + [TTCTGGAA] 111 (89.96)
11 + .TTCGAGAA. 173 (90.03)
11 + .TTCTAGAA. 183 (100.00)
11 + .TTCGAGAA. 277 (90.03)
11 + [TTCCAGAA] 329 (89.96)
11 + .TTCTAGAA. 339 (100.00)
11 - .TTCTAGAA. 339 (100.00)
11 - [TTCTGGAA] 329 (89.96)
11 - .TTCTCGAA. 277 (90.03)
11 - .TTCTAGAA. 183 (100.00)
11 - .TTCTCGAA. 173 (90.03)
11 - [TTCCAGAA] 111 (89.96)
11 - .TTCTAGAA. 101 (100.00)
12 + [TTTTAAAA] 372 (88.84)
12 + [TTTTAAAA] 738 (88.84)
12 + [TTTTTGAA] 776 (86.29)
12 + [TTCAAAAA] 893 (86.29)
12 + [TTCTAGAG] 909 (85.86)
12 + [TTCCAGAA] 1263 (89.96)
12 - [TTCTGGAA] 1263 (89.96)
12 - [CTCTAGAA] 909 (85.86)
12 - [TTTTTGAA] 893 (86.29)
12 - [TTCAAAAA] 776 (86.29)
12 - [TTTTAAAA] 738 (88.84)
12 - [TTTTAAAA] 372 (88.84)
13 + .TTCTCGAA. 211 (90.03)
13 + .TTCTAGAA. 338 (100.00)
13 - .TTCTAGAA. 338 (100.00)
13 - .TTCGAGAA. 211 (90.03)
15 + [TTCTTAAA] 18 (86.29)
15 + [TTTTAAAA] 475 (88.84)
15 + [TTCAAAAA] 615 (86.29)
15 + [TTTTAAAA] 1040 (88.84)
15 + .TTTTAGAA. 1193 (94.42)
15 + [TTTTAAAA] 1268 (88.84)
15 + [TTCAAAAA] 1903 (86.29)
15 - [TTTTTGAA] 1903 (86.29)
15 - [TTTTAAAA] 1268 (88.84)
15 - .TTCTAAAA. 1193 (94.42)
15 - [TTTTAAAA] 1040 (88.84)
15 - [TTTTTGAA] 615 (86.29)
15 - [TTTTAAAA] 475 (88.84)
15 - [TTTAAGAA] 18 (86.29)
16 + [TTTTAAAA] 55 (88.84)
16 + [TTCTTAAA] 264 (86.29)
16 + [TTCAAAAA] 312 (86.29)
16 + [TTCAAAAA] 384 (86.29)
16 + .TTCTCGAA. 1665 (90.03)
16 - .TTCGAGAA. 1665 (90.03)
16 - [TTTTTGAA] 384 (86.29)
16 - [TTTTTGAA] 312 (86.29)
16 - [TTTAAGAA] 264 (86.29)
16 - [TTTTAAAA] 55 (88.84)
17 + .TTCTAGAA. 104 (100.00)
17 + .TTCTAGAA. 258 (100.00)
17 - .TTCTAGAA. 258 (100.00)
17 - .TTCTAGAA. 104 (100.00)
18 + .TTCTAGAA. 67 (100.00)
18 + [TTCAAAAA] 589 (86.29)
18 + [TTTTAAAA] 835 (88.84)
18 - [TTTTAAAA] 835 (88.84)
18 - [TTTTTGAA] 589 (86.29)
18 - .TTCTAGAA. 67 (100.00)
19 + [TTCAAAAA] 557 (86.29)
19 + .TTCTAAAA. 596 (94.42)
19 + .TTCTAGAA. 674 (100.00)
19 - .TTCTAGAA. 674 (100.00)
19 - .TTTTAGAA. 596 (94.42)
19 - [TTTTTGAA] 557 (86.29)
20 + [TTCAAAAA] 954 (86.29)
20 - [TTTTTGAA] 954 (86.29)
21 + .TTCTTGAA. 253 (91.87)
21 - .TTCAAGAA. 253 (91.87)
22 + .TTCTTGAA. 952 (91.87)
22 + [TTCAAAAA] 1492 (86.29)
22 + [TTTTAAAA] 1777 (88.84)
22 + [TTCAAAAA] 1789 (86.29)
22 - [TTTTTGAA] 1789 (86.29)
22 - [TTTTAAAA] 1777 (88.84)
22 - [TTTTTGAA] 1492 (86.29)
22 - .TTCAAGAA. 952 (91.87)
23 + [TTCTAGAC] 87 (86.66)
23 - [GTCTAGAA] 87 (86.66)
24 + [TTCAAAAA] 140 (86.29)
24 + [TTTAAGAA] 188 (86.29)
24 + [TTCTAGTA] 485 (86.65)
24 + [TTTTTGAA] 519 (86.29)
24 + .TTCTCGAA. 1009 (90.03)
24 + [TACTAGAA] 1280 (86.65)
24 + .TTCTAGAA. 1754 (100.00)
24 - .TTCTAGAA. 1754 (100.00)
24 - [TTCTAGTA] 1280 (86.65)
24 - .TTCGAGAA. 1009 (90.03)
24 - [TTCAAAAA] 519 (86.29)
24 - [TACTAGAA] 485 (86.65)
24 - [TTCTTAAA] 188 (86.29)
24 - [TTTTTGAA] 140 (86.29)
25 + [TTTTTGAA] 719 (86.29)
25 + [TTCTAGAT] 1157 (88.21)
25 + [TTCTACAA] 1834 (89.71)
25 - [TTGTAGAA] 1834 (89.71)
25 - [ATCTAGAA] 1157 (88.21)
25 - [TTCAAAAA] 719 (86.29)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		53	32	38	669	|		0	0	0	64
2		40	23	23	706	|		0	0	0	64
3		57	521	57	157	|		0	58	0	6
4		98	65	66	563	|		4	0	9	51
5		563	66	65	98	|		51	9	0	4
6		157	57	521	57	|		6	0	58	0
7		706	23	23	40	|		64	0	0	0
8		669	38	32	53	|		64	0	0	0

---

AAGGTTCTAG
CTAGAACCTT

3 redundant motifs found:
AGAAGGTTCTAG - GAAGGTTCTAGA - AACCTTCTAG -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [AACTTTTTAG] 1278 (86.14)
1 - [TAGGTTCTAG] 772 (89.66)
2 - .AAGTTTCTCG. 22 (90.86)
3 + [AACGTTCTTG] 946 (85.99)
3 + .AAGGTTCTAG. 1053 (100.00)
3 - [AACGTTCTTG] 942 (85.99)
3 - [ACGTTTCTAG] 851 (85.13)
4 + [AATCTTTTAG] 53 (86.48)
4 + .AAGCTTCTAG. 545 (95.05)
4 + [AAGTTTCCAG] 1002 (88.40)
4 - [AATGTTCTGG] 1497 (88.54)
4 - [AAAGTTCAAG] 270 (87.26)
5 + [AAATTTTTAG] 756 (88.14)
5 + .AATCTTCTAG. 954 (91.88)
5 + .AAACTTCTAG. 974 (91.33)
5 + [AACCTTCTAG] 1082 (89.33)
5 + [AAGATTCTAC] 1399 (86.85)
5 + .AAACTTCTAG. 1555 (91.33)
5 + [AAAATTCTAT] 1576 (85.37)
5 - [AATGTTCTGG] 1773 (88.54)
5 - .AAGATTCTAG. 1561 (95.37)
5 - .AAGTTTCTAG. 1415 (97.27)
5 - [AAGATTCCAG] 1290 (86.50)
5 - [AATTTTCTGG] 1108 (85.81)
5 - .AAAATTCTAG. 1088 (91.64)
5 - .AAGGTTCCAG. 1078 (91.13)
5 - [AAGTTTTTCG] 970 (85.45)
5 - .AAATTTCTAG. 960 (93.54)
5 - [AAGATTCTCG] 950 (88.96)
6 + [AACCTTCTAG] 502 (89.33)
6 + [AAATTTCTAA] 1456 (85.80)
6 + [AATTTTCTAC] 1590 (85.58)
6 - [AAGGTTCTCT] 498 (87.31)
6 - [AATTTTCTAC] 362 (85.58)
7 + [AACGTTCTCG] 1129 (87.87)
7 + [AAGGTTTTAT] 1369 (88.31)
7 - [AAAGATCTAG] 1107 (86.20)
7 - [AATTTTCAAG] 572 (85.09)
7 - [AACTTTCTAT] 374 (85.27)
8 - [AAAATTTTAG] 142 (86.24)
9 + [AAGTTTCGAG] 184 (87.28)
10 + [AAGCTTTTAG] 559 (89.65)
10 + [AAGATTCCAG] 1386 (86.50)
10 - [AACGTTCTAA] 652 (86.54)
10 - [AACTTTCTCG] 338 (85.14)
10 - [AATGTTCTGG] 108 (88.54)
11 + [AAGCTTCTGG] 107 (86.76)
11 + .AACGTTCTAG. 179 (94.28)
11 + [AATGTTCGAG] 273 (86.84)
11 + .AAGCTTCTAG. 335 (95.05)
11 + [AAAGTTCTAC] 411 (87.75)
11 - [AAGCTTCTGG] 331 (86.76)
11 - .AAGGTTCTAG. 185 (100.00)
11 - [AACGTTCTCG] 175 (87.87)
11 - .AAGCTTCTAG. 103 (95.05)
11 - [AAAGTTCTAC] 27 (87.75)
13 + .AAATTTCTAG. 334 (93.54)
13 - [ATTTTTCTAG] 340 (85.35)
15 + [AATCTTTTAG] 1189 (86.48)
16 + [AATTTTCAAG] 129 (85.09)
16 - .AATGTTCTAT. 411 (90.55)
16 - [AAGTTTCGAG] 150 (87.28)
16 - [AAAATTCTAT] 125 (85.37)
17 + .AATGTTCTAG. 100 (96.83)
17 + [AAGGTCCTAG] 110 (87.98)
17 + .AATGTTCTAG. 254 (96.83)
18 + .AAAATTCTAG. 73 (91.64)
18 - .AATTTTCTAG. 69 (94.10)
19 + [AAGGTTTTGG] 377 (86.30)
19 - .AAAATTCTAG. 676 (91.64)
22 + .AATGTTTTAG. 1567 (91.42)
22 + .AAGTTTCTAG. 1594 (97.27)
22 + [AAGTTTCCAG] 1876 (88.40)
22 + [AATGTTCTAA] 1938 (89.09)
22 - [AATATTTTAG] 1759 (86.79)
22 - .AAAGTTTTAG. 1417 (90.86)
23 + .AATGTTCTAG. 83 (96.83)
24 + .AAGTTTCTAG. 481 (97.27)
24 + [AATTTTCTGG] 1134 (85.81)
24 + [GAGTTTCTAG] 1750 (85.88)
24 - .AATTTTCTAG. 1756 (94.10)
24 - [AAGTTTCTAA] 1219 (89.53)
24 - [AAAGTACTAG] 487 (85.01)
25 + [AATGTTCCAG] 389 (87.96)
25 + .AAACTTCTAG. 1153 (91.33)
25 - [AAATTTCTAC] 127 (85.02)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		297	14	16	21	|		29	0	0	0
2		292	13	12	31	|		29	0	0	0
3		65	39	169	75	|		9	1	11	8
4		51	47	167	83	|		4	7	10	8
5		23	5	16	304	|		0	0	0	29
6		17	14	12	305	|		0	0	0	29
7		17	244	26	61	|		0	27	0	2
8		27	28	21	272	|		0	1	0	28
9		243	47	29	29	|		28	1	0	0
10		33	27	240	48	|		0	0	28	1

---

AGAACGTTCTAG
CTAGAACGTTCT

5 redundant motifs found:
AGAATGTTCTAG - AGAAGGTTCTAG - AGAACCTTCTAG - GAACGTTCTAGA - AGAACGTTCT -

Best occurrences (match percentage):
Seq St oligo pos match
2 + [AAAACTTTTTAA] 1065 (85.09)
3 + .AGAACGTTCTTG. 944 (93.69)
3 + .AGAAGGTTCTAG. 1051 (95.72)
3 - [AGAACCTTCTAC] 1049 (88.30)
3 - .AGAACGTTCTTG. 942 (93.69)
3 - [AGAAATATCTAG] 879 (85.42)
5 + .AGAATCTTCTAG. 952 (93.02)
5 + .AAAAACTTCTAG. 972 (90.08)
5 + [AGAAAATTCTGG] 1070 (87.58)
5 + [GGAACCTTCTAG] 1080 (89.38)
5 + [AGAAACTTCCAG] 1100 (87.69)
5 + [AGAAACTTCTGG] 1282 (86.19)
5 + [AGAATGTTCCAA] 1322 (86.61)
5 + [AGAAGATTCTAC] 1397 (85.41)
5 + [AGAAACTTCTGG] 1417 (86.19)
5 + [AAAAAATTCTAT] 1574 (86.65)
5 - [GGAAGATTCTAG] 1561 (86.49)
5 - .AGAAGTTTCTAG. 1415 (93.20)
5 - [AGAATCTTCTTG] 1395 (86.71)
5 - [AGAATTTTCTGG] 1108 (87.62)
5 - .AGAAGGTTCCAG. 1078 (90.28)
5 - [CGAAATTTCTAG] 960 (86.19)
5 - [AGAAGATTCTCG] 950 (86.11)
6 + .AGAACCTTCTAG. 500 (95.94)
6 + [AAAAATTTCTAA] 1454 (86.59)
7 + .AGAACGTTCTCG. 1127 (93.06)
7 - [AGAACGTTCTTT] 1125 (88.87)
7 - [AAAATTTTCAAG] 572 (85.29)
7 - [ACAACTTTCTAT] 374 (85.08)
10 + [AGAACATTTGAG] 110 (86.14)
10 + [AGAACGTTTCAT] 654 (85.43)
10 + [AAAAAGTTTTAT] 1170 (85.01)
10 + [AGAAAGTTCGAA] 1286 (85.29)
10 + [AGAAGATTCCAG] 1384 (87.61)
10 - [AAAACTTTTTAA] 1168 (85.09)
10 - [GAAACGTTCTAA] 652 (85.37)
11 + .AGAACGTTCTAG. 177 (100.00)
11 + [AGAACCTTCCAT] 187 (85.68)
11 + .AGAAGCTTCTAG. 333 (91.65)
11 - [GGAAGGTTCTAG] 185 (89.16)
11 - .AGAACGTTCTCG. 175 (93.06)
11 - .AGAAGCTTCTAG. 103 (91.65)
12 - [AGAACATTTTTG] 895 (86.70)
12 - [AAAACCTTCTAT] 144 (88.07)
13 + [CGAAATTTCTAG] 332 (86.19)
13 - [AGAAATTTCGAG] 330 (87.80)
15 + [AAAATCTTTTAG] 1187 (85.66)
15 + [AGAATGTTTTAA] 1262 (87.73)
15 - [AAAACATTCTAA] 1260 (89.25)
16 + [AGAATTTTCAAG] 127 (88.34)
16 + .AGAACATTCTCG. 413 (90.39)
16 - .AGAATGTTCTAT. 411 (92.26)
17 + .AGAATGTTCTAG. 98 (97.08)
17 + [CGAATGTTCTAG] 252 (88.61)
17 - .AGAACATTCGAG. 250 (90.46)
17 - [AGGACCTTCTAG] 106 (85.92)
17 - .AGAACATTCTAA. 96 (92.30)
18 + .AGAAAATTCTAG. 71 (94.51)
18 - .AGAATTTTCTAG. 69 (94.56)
22 + [ACAAGTTTCTAG] 1592 (85.61)
22 + [AAAATGTTCTAA] 1936 (89.01)
23 + .AAAATGTTCTAG. 81 (94.04)
23 - [AGAACATTTTTG] 79 (86.70)
24 - [GGAATTTTCTAG] 1756 (88.00)

Frequency Matrix

	All Occs							Best Occs
		A	C	G	T			A	C	G	T
1		237	20	35	31	|		21	0	0	0
2		79	21	192	31	|		2	0	19	0
3		279	15	15	14	|		21	0	0	0
4		278	11	7	27	|		21	0	0	0
5		66	150	43	64	|		2	9	5	5
6		66	44	144	69	|		4	5	10	2
7		19	7	15	282	|		0	0	0	21
8		15	10	13	285	|		0	0	0	21
9		26	215	21	61	|		0	21	0	0
10		35	44	29	215	|		0	1	1	19
11		227	30	30	36	|		16	3	0	2
12		47	22	204	50	|		1	0	19	1

---