Your Weeder Web Results

NEW: Starting a large job on file /tmp/motif_master/72_WEEDER/aiy_200.fa

Organism code: CE

Processing both strands

/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/72_WEEDER/aiy_200.fa CE large S


Searching for motifs of length 6 with 1 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/72_WEEDER/aiy_200.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) CCCGCT 1.64
2) ATTGGC 1.52
3) GGGTAA 1.50
4) AGCCCA 1.45
5) TACCCC 1.38
6) AAAAAT 1.30
7) GACTTC 1.18
8) TTGGCT 1.16
9) CTGGGC 1.15
10) GATGAG 1.14

Elapsed time : 0 min. 0 sec.


Searching for motifs of length 8 with 2 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/72_WEEDER/aiy_200.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) AATTGGCT 1.93
2) TACCCCGC 1.88
3) ACCCCGCT 1.80
4) GGCTTCGT 1.77
5) ACGAAGTC 1.74
6) GATTAATC 1.74
7) ATTGGCTC 1.73
8) AACTGGGC 1.70
9) TATTCATA 1.66
10) AGCCCAGT 1.62

Elapsed time : 0 min. 2 sec.


Searching for motifs of length 10 with 3 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/72_WEEDER/aiy_200.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) TTGGCTTCGT 2.71
2) ACGAAGTCAA 2.51
3) ATTGGCTTCG 2.49
4) CTACCCCGCT 2.24
5) AATTGGCTCA 2.22
6) TACCCCGCTA 2.20
7) AAATTGGCTC 2.01
8) GAAGCCAATT 2.00
9) GACGAAGTCA 1.99
10) TGGCTTCGTT 1.95

Elapsed time : 0 min. 54 sec.


Searching for motifs of length 12 with 4 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/72_WEEDER/aiy_200.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) ATTGGCTTCGTT 4.12
2) TTGGCTTCGTTA 3.99
3) TATTGGCTTCGT 3.86
4) GACGAAGTCAAT 3.82
5) TGGCTTCGTTAA 3.48
6) GAGGAAGCCAAT 3.47
7) ATTGGCTCAATT 3.47
8) ACGAAGTCAATT 3.44
9) AACGAGCCCAAT 3.42
10) ATATGAATAGGA 3.41

Elapsed time : 7 min. 29 sec.


Your sequences:

Sequence 1 : >III:5795839..5796038
Sequence 2 : >X:11767478..11767677
Sequence 3 : >III:7833625..7833824
Sequence 4 : >II:10912763..10912962
Sequence 5 : >I:14142152..14142351
Sequence 6 : >X:7118534..7118733
Sequence 7 : >IV:3625732..3625931
Sequence 8 : >X:15292938..15293137


**** MY ADVICE ****


*** Interesting motifs (highest-ranking) seem to be :


AATTGGCT
AGCCAATT

6 redundant motifs found:
GAAGCCAATT - AAATTGGCTC - AATTGGCTCA - ATTGGCTC - TTGGCT - ATTGGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATTGGCT. 95 (100.00)
2 + [AATTTGTT] 59 (89.26)
2 + [AAGTGGCA] 83 (86.81)
2 + .TATTGGCT. 95 (92.54)
2 - [AAATGACT] 180 (86.76)
3 + [AATTAGCC] 74 (86.89)
3 + [ATTTGGGT] 111 (85.63)
3 + [AAGTGGTT] 136 (87.66)
3 - .AATTAACT. 83 (90.40)
4 + [AATTAGTT] 95 (89.98)
5 + [AATTTGCA] 105 (88.41)
5 - [ATTGGGCT] 100 (86.57)
5 - [ATTGGGCT] 4 (86.57)
6 - [ATTTGTCT] 142 (87.35)
6 - [AAATTGCT] 115 (86.04)
6 - [AATTGCTT] 114 (88.33)
6 - .AATTGGCT. 101 (100.00)
7 + .AATTAGCT. 73 (95.20)
7 + .AATTGGCT. 95 (100.00)
7 - .AATTGACT. 69 (95.20)
8 + [AAGTTGCT] 4 (87.35)
8 + [AATTCCCT] 65 (85.77)
8 + [TATTGGCA] 95 (86.47)
8 - [AATTAGTT] 171 (89.98)
8 - [AATTCTCT] 118 (85.77)
8 - [AATTGCCA] 49 (87.48)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 30 0 0 3| 6 0 0 1
2 27 2 0 4| 7 0 0 0
3 2 1 3 27| 0 0 0 7
4 1 1 3 28| 0 0 0 7
5 5 2 22 4| 2 0 5 0
6 5 3 22 3| 2 0 5 0
7 1 25 2 5| 0 7 0 0
8 4 2 1 26| 0 0 0 7






TTGGCTTCGT
ACGAAGCCAA

6 redundant motifs found:
TATTGGCTTCGT - TTGGCTTCGTTA - ATTGGCTTCGTT - TGGCTTCGTT - ATTGGCTTCG - GGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTGACTTCAT. 4 (95.87)
1 + [TCATCATCGT] 19 (85.86)
1 + .TCGTCTTCTT. 25 (91.81)
1 + [TCTTCTTCTT] 28 (89.26)
1 + [TCTTCTTCTT] 31 (89.26)
1 + [TCTTCTTCTT] 34 (89.26)
1 + [TCTTCTTCTT] 37 (89.26)
1 + [TTTGCCTAAT] 57 (88.35)
1 + [TGGGCAGTGT] 78 (85.47)
1 + .TTGGCTCAAT. 97 (92.93)
1 + [TTGTGATCAT] 107 (86.71)
1 - .CTGCCTTCTT. 137 (91.71)
1 - .TTGGCTGTGT. 129 (92.72)
2 + [GTGGCATTGT] 85 (88.88)
2 + .TTGGCTTCGT. 97 (100.00)
2 + [TTGCTATTTT] 141 (86.84)
2 - [TTTTTTTCGA] 188 (85.76)
2 - .TTTACTGCTT. 20 (90.07)
3 + [TTAGCCCAGT] 76 (87.25)
3 + [TTAATTTAGT] 85 (88.85)
3 + .TTTGCTTTTT. 166 (94.66)
3 + [TTGCTTTTTA] 167 (85.53)
3 + .TTTACTTTTT. 173 (92.24)
3 + [TTACTTTTTT] 174 (87.91)
3 + [TTTTTTCCAT] 179 (86.18)
3 + [TTTCCATTTT] 182 (87.91)
3 - .TTTTCTTTTT. 150 (91.53)
3 - [TTTCTTTTTT] 149 (87.91)
4 + [TCTCCTCCGT] 77 (86.68)
4 + .TTAGTTTAGT. 97 (91.26)
4 + [TTTAGTTAGT] 101 (87.64)
4 - [TTTGCTCCGA] 152 (89.70)
4 - [GTAGCATTTT] 41 (86.09)
4 - .TTGTCATTTT. 9 (90.46)
5 + .TTTGCATATT. 107 (91.03)
5 + [GTAGCTTTTT] 151 (89.72)
5 - .TTATCTTCTT. 139 (94.09)
5 - .TTGGGCTCGT. 97 (90.33)
5 - [TTAACTCTTT] 88 (89.43)
5 - .TTAACTTCTT. 79 (94.80)
5 - .TTTTTTTCTT. 71 (90.46)
5 - [TTTTTTCTTT] 70 (85.10)
5 - .TTTTCTTTTT. 68 (91.53)
5 - [TTTCTTTTTT] 67 (87.91)
5 - [TTTTTTTTTT] 63 (87.91)
5 - [TTTTTTTTTT] 62 (87.91)
5 - [TTTTTTTTTT] 61 (87.91)
5 - [TTTGCACATT] 54 (88.23)
6 - .TTGGCTTCCT. 97 (96.38)
6 - .TGGGCTTCTG. 43 (91.20)
6 - .TTTGCATTTT. 5 (91.03)
7 + [TTTACCTCAT] 42 (88.49)
7 + .TTGGCTCAAT. 97 (92.93)
7 - [TTTTTTTCTA] 134 (85.53)
7 - .TTGACTTCGT. 65 (97.58)
7 - [TCGTCTCCCT] 59 (85.61)
7 - [TCGATTTTTT] 7 (86.34)
8 + [GTTGCTTTTT] 6 (89.72)
8 + [TTGCTTTTTA] 7 (85.53)
8 + [TTACTTTCAT] 14 (88.99)
8 + [TTTCGTTTAT] 88 (85.22)
8 - [TTAGTTGTGT] 167 (86.54)
8 - .TGTGTTTCGT. 162 (90.20)
8 - .TTGCCATCTT. 45 (93.02)
8 - [TTTCTTGCTT] 37 (85.74)
8 - [CTTGCTTTAT] 34 (88.24)
8 - .TTGCTTTATT. 33 (90.46)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 1 1 17| 0 1 0 25
2 0 1 2 16| 0 1 2 23
3 3 0 13 3| 3 0 14 9
4 3 2 12 2| 5 3 12 6
5 0 16 1 2| 0 21 1 4
6 2 1 0 16| 4 1 0 21
7 0 3 1 15| 0 2 2 22
8 3 13 0 3| 5 14 0 7
9 3 1 8 7| 3 1 6 16
10 1 0 1 17| 0 0 1 25






ATTGGCTTCGTT
AACGAAGCCAAT

7 redundant motifs found:
ATTGGCTCAATT - TGGCTTCGTTAA - TATTGGCTTCGT - TTGGCTTCGTTA - TGGCTTCGTT - ATTGGCTTCG - TTGGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [CTTGACTTCATC] 3 (89.05)
1 + [ATCGTCTTCTTC] 24 (87.23)
1 + [TTTTGCCTAATC] 56 (85.77)
1 + .ATTGGCTCAATT. 96 (94.46)
1 - [CTTGGCTGTGTG] 128 (85.61)
2 + .AGTGGCATTGTT. 84 (91.57)
2 + .ATTGGCTTCGTT. 96 (100.00)
2 - [ATGTTTTTTTTT] 36 (85.68)
2 - .ATTTACTGCTTT. 19 (92.47)
3 + [ATTAGCCCAGTT] 75 (89.79)
3 + [GTTAATTTAGTT] 84 (85.03)
3 + [ATTTGGGTAATT] 111 (85.44)
3 + .TTTTACTTTTTT. 172 (90.42)
3 + [TTTTCCATTTTT] 181 (86.98)
3 + [ATTTTTTGTTTT] 187 (86.06)
3 - .ATTTTCTTTTTT. 149 (92.49)
3 - [TTTTCTTTTTTT] 148 (85.86)
4 + .ATTAGTTTAGTT. 96 (92.91)
4 + [AGTGCATTTGTT] 108 (85.88)
4 - [GTTTGCTCCGAT] 151 (85.24)
4 - [AGTAGCATTTTT] 40 (88.74)
5 + .ATTTGCATATTT. 106 (94.46)
5 - [TTTATCTTCTTC] 138 (87.13)
5 - .ATTGGGCTCGTT. 96 (90.87)
5 - .TTTAACTTCTTT. 78 (91.26)
5 - [CTTTTTTTCTTT] 70 (86.98)
5 - [TTTTTCTTTTTT] 67 (89.18)
5 - [TTTTCTTTTTTT] 66 (85.86)
5 - [CTTTTTTTTTTT] 62 (85.13)
5 - [TTTTTTTTTTTT] 61 (85.86)
5 - [TTTTGCACATTT] 53 (88.55)
6 - [ATTTGTCTAATT] 138 (88.66)
6 - [TTTGTCTAATTT] 137 (85.66)
6 - .ATTGGCTTCCTC. 96 (92.80)
6 - .ATTTGAATCATT. 77 (91.10)
6 - [TTGGGCTTCTGT] 42 (86.99)
6 - .TTTTGCATTTTT. 4 (90.82)
7 + .ATTGGCTCAATT. 96 (94.46)
7 - [ATGTGCGTCTTT] 149 (89.60)
7 - .ATTGACTTCGTC. 64 (94.51)
8 + [ATTGGCAAAATT] 96 (89.78)
8 - [ATTAGTTGTGTT] 166 (89.47)
8 - [TTGTGTTTCGTT] 161 (88.63)
8 - .ATTGCCATCTTT. 44 (93.39)
8 - [CTTGCTTTATTT] 32 (86.70)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 19 2 1 3| 13 0 0 3
2 0 0 2 23| 0 0 1 15
3 0 1 3 21| 0 0 0 16
4 4 0 14 7| 2 0 8 6
5 4 2 17 2| 4 1 10 1
6 2 19 1 3| 1 13 1 1
7 5 2 1 17| 5 1 0 10
8 1 4 3 17| 0 2 1 13
9 6 14 0 5| 4 8 0 4
10 5 1 11 8| 3 1 5 7
11 1 0 1 23| 0 0 0 16
12 0 4 1 20| 0 2 0 14





*** Interesting motifs (not highest-ranking) can also be :


ATTGGC
GCCAAT

3 redundant motifs found:
ATTGGCTC - AATTGGCT - TTGGCT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [CTTGAC] 3 (87.22)
1 + [ACTGGG] 76 (89.11)
1 + .ATTGGC. 96 (100.00)
1 - .CTTGGC. 134 (93.52)
1 - [ATTGAG] 101 (89.11)
1 - [ACTGCC] 80 (87.40)
1 - .ATTAGG. 61 (91.00)
2 + .AGTGGC. 84 (93.70)
2 + .ATTGGC. 96 (100.00)
2 - [ATTTAC] 25 (87.60)
3 + .ATTAGC. 75 (95.60)
3 + [ATTTGG] 111 (89.30)
3 - [ATTACC] 116 (89.30)
3 - [ATTAAC] 84 (89.30)
3 - [ACTGGG] 80 (89.11)
4 - [ATTAAC] 92 (89.30)
4 - [AGTAGC] 46 (89.30)
5 + .ATTTGC. 106 (93.90)
5 + .ACTGGC. 123 (93.70)
5 - .ATTGGG. 102 (95.40)
5 - .ATTGGG. 6 (95.40)
6 + [ATTTCC] 119 (87.60)
6 + [ATTGCG] 151 (89.11)
6 - .ATTGGC. 102 (100.00)
6 - [ATTTGG] 50 (89.30)
6 - [ATTACC] 25 (89.30)
7 + .ATTAGC. 74 (95.60)
7 + .ATTGGC. 96 (100.00)
7 - [ATTGCG] 178 (89.11)
7 - [CTTTGC] 171 (87.42)
7 - [ATTGAG] 101 (89.11)
7 - .ATTGAC. 70 (93.70)
8 + [AGTTGC] 5 (87.60)
8 + [ATTTAC] 54 (87.60)
8 + .ATTGGC. 96 (100.00)
8 + [ATTTCC] 145 (87.60)
8 - .ATTGCC. 50 (93.70)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 14 1 0 0| 15 1 0 0
2 0 1 1 13| 0 1 1 14
3 0 0 0 15| 0 0 0 16
4 2 0 12 1| 3 0 12 1
5 1 1 13 0| 1 1 14 0
6 0 13 2 0| 0 13 3 0






TACCCCGC
GCGGGGTA

4 redundant motifs found:
TACCCCGCTA - CTACCCCGCT - ACCCCGCT - TACCCC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .TACCCCGC. 162 (100.00)
3 + .TACCCCGC. 57 (100.00)
5 - .TTACCCCC. 162 (91.94)
5 - .TACCCCCT. 161 (95.28)
6 - .TACCCTGA. 21 (95.70)
7 + [TTACCTCA] 43 (87.64)
7 + .TCCCCTGC. 165 (95.70)
7 - .TTACCCGC. 123 (93.65)
7 - .TACCCGCC. 122 (95.70)
8 + .TTCCCTCA. 67 (90.98)
8 + [TTCCCGCT] 177 (89.69)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 0 0 7| 0 0 0 9
2 5 1 0 1| 5 1 0 3
3 1 6 0 0| 2 7 0 0
4 0 7 0 0| 0 9 0 0
5 0 7 0 0| 0 9 0 0
6 0 4 1 2| 0 5 1 3
7 0 2 5 0| 0 4 5 0
8 1 5 0 1| 2 6 0 1






ACGAAGTCAA
TTGACTTCGT

4 redundant motifs found:
ACGAAGTCAATT - GACGAAGTCAAT - GACGAAGTCA - ACGAAGTC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [ACACAGCCAA] 129 (85.60)
1 + [AAGAAGGCAG] 137 (88.16)
1 - [AAGAAGACGA] 25 (85.92)
1 - .ATGAAGTCAA. 4 (96.79)
2 + .AAGCAGTAAA. 20 (90.39)
2 - .ACGAAGCCAA. 97 (96.30)
3 + [AAAAAGAAAA] 150 (86.94)
3 - .AAAAAGTAAA. 173 (92.49)
3 - [AAAAAGCAAA] 166 (88.79)
3 - [ACCAACTAAA] 89 (87.06)
3 - [GCTAATTCAA] 71 (85.44)
4 - [ACTAACTAAA] 101 (88.91)
4 - [AACAAGTCAC] 85 (88.33)
5 + [AAAAAGAAAA] 68 (86.94)
5 + .AAGAAGTTAA. 79 (95.42)
5 + [ACGAGCCCAA] 97 (86.74)
5 + [AAGAAGATAA] 139 (89.87)
6 + [AAAAATGCAA] 4 (85.24)
6 + .AGGAAGCCAA. 97 (92.00)
7 + .ACGAAGTCAA. 65 (100.00)
7 - [ATGAGGTAAA] 42 (88.93)
8 + [AAAAAGTGAA] 24 (88.19)
8 + [AAGATGGCAA] 45 (86.31)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 22 0 2 0| 7 0 0 0
2 9 10 2 3| 3 2 1 1
3 3 2 15 4| 1 0 6 0
4 22 2 0 0| 6 1 0 0
5 19 1 3 1| 7 0 0 0
6 1 3 17 3| 0 0 7 0
7 2 4 2 16| 0 2 0 5
8 5 15 1 3| 2 4 0 1
9 22 1 1 0| 7 0 0 0
10 19 2 2 1| 7 0 0 0






TTGGCTTCGTTA
TAACGAAGCCAA

4 redundant motifs found:
TGGCTTCGTTAA - ATTGGCTTCGTT - TGGCTTCGTT - TTGGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTGACTTCATCA. 4 (92.90)
1 + [TTTGCCTAATCA] 57 (87.65)
1 + .TTGGCTCAATTT. 97 (92.08)
1 - [TTGTGTTGATTA] 63 (85.81)
2 + [GTGGCATTGTTA] 85 (87.63)
2 + .TTGGCTTCGTTA. 97 (100.00)
2 - .TTTACTGCTTTA. 18 (90.23)
3 + [TTAGCCCAGTTA] 76 (89.14)
3 + [TTAATTTAGTTG] 85 (86.14)
3 + [TTTACTTTTTTT] 173 (88.06)
3 + [TTTTTTCCATTT] 179 (85.00)
3 - [TTTTCTTTTTTT] 148 (86.70)
4 + .TTAGTTTAGTTA. 97 (92.39)
4 - [TTTGCTCCGATG] 150 (86.00)
5 + [TTTGCATATTTT] 107 (89.85)
5 - [TTATCTTCTTCT] 137 (86.56)
5 - .TTGGGCTCGTTA. 95 (91.98)
5 - [TTAACTCTTTTA] 86 (87.34)
5 - .TTAACTTCTTTT. 77 (91.43)
5 - [TTTTTTTCTTTT] 69 (87.23)
5 - [TTTTCTTTTTTT] 66 (86.70)
5 - [TTTGCACATTTT] 52 (87.26)
6 - [TTTGTCTAATTT] 137 (85.57)
6 - [TTGTCTAATTTT] 136 (85.06)
6 - .TTGGCTTCCTCA. 95 (91.98)
6 - [TTTGAATCATTA] 76 (89.10)
6 - [TGGGCTTCTGTC] 41 (86.39)
6 - [TTTGCATTTTTC] 3 (87.49)
7 + [TTTACCTCATCA] 42 (87.08)
7 + .TTGGCTCAATTC. 97 (91.52)
7 - [TGTGCGTCTTTA] 148 (87.95)
7 - .TTGACTTCGTCT. 63 (91.59)
8 + [TTGGCAAAATTA] 97 (89.09)
8 - [TGTGTTTCGTTG] 160 (87.67)
8 - [TTGCCATCTTTC] 43 (87.87)
8 - [TTGCTTTATTTC] 31 (85.17)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 0 1 21| 0 0 0 10
2 1 0 3 18| 0 0 0 10
3 4 0 13 5| 2 0 7 1
4 4 1 15 2| 4 0 6 0
5 1 16 2 3| 0 8 1 1
6 4 2 1 15| 0 1 0 9
7 1 4 2 15| 0 2 1 7
8 5 14 1 2| 3 7 0 0
9 6 1 10 5| 3 1 4 2
10 1 0 1 20| 0 0 0 10
11 0 3 1 18| 0 3 0 7
12 13 3 2 4| 6 1 0 3






ACCCCGCT
AGCGGGGT

4 redundant motifs found:
TACCCCGCTA - CTACCCCGCT - TACCCCGC - CCCGCT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .ACCCCGCT. 163 (100.00)
2 + .ACCTTGCT. 138 (95.38)
3 + .ACCCCGCT. 58 (100.00)
7 - .ATCCGGCT. 110 (97.20)
8 + .TTCCCGCT. 177 (96.67)
8 - .TTCTTGCT. 38 (92.05)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 4 0 0 1| 4 0 0 2
2 0 3 0 2| 0 3 0 3
3 0 5 0 0| 0 6 0 0
4 0 4 0 1| 0 4 0 2
5 0 3 1 1| 0 3 1 2
6 0 0 5 0| 0 0 6 0
7 0 5 0 0| 0 6 0 0
8 0 0 0 5| 0 0 0 6






ATTGGCTTCG
CGAAGCCAAT

5 redundant motifs found:
TATTGGCTTCGT - ATTGGCTTCGTT - TGGCTTCGTT - GAAGCCAATT - TTGGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .CTTGACTTCA. 3 (91.02)
1 + [ATCGTCTTCT] 24 (89.54)
1 + .AGTGTCTTCT. 83 (90.84)
1 + .ATTGGCTCAA. 96 (92.28)
1 - [CTTGGCTGTG] 130 (86.65)
2 + .ATTTGTTTCT. 60 (90.81)
2 + [AGTGGCATTG] 84 (87.53)
2 + .ATTGGCTTCG. 96 (100.00)
2 - [ATTTACTGCT] 21 (86.39)
3 + [AGTGGTTCTG] 137 (85.10)
3 + [TTTTGCTTTT] 165 (86.83)
3 - [ATTTTCTTTT] 151 (86.98)
4 + [ATTAGTTTAG] 96 (87.20)
4 - [GTTTGCTCCG] 153 (87.79)
5 + [ATTTGCATAT] 106 (87.52)
5 - [TTTATCTTCT] 140 (85.56)
5 - [ATCTTCTTCT] 137 (85.29)
5 - .ATTGGGCTCG. 98 (91.90)
5 - [TTTAACTTCT] 80 (86.39)
5 - [ATTGGGCTCC] 2 (89.90)
5 - [TTGGGCTCCG] 1 (89.21)
6 - .ATTGGCTTCC. 98 (97.99)
6 - .TTGGGCTTCT. 44 (90.81)
7 + [ATTAGCTCTA] 74 (85.78)
7 + .ATTGGCTCAA. 96 (92.28)
7 - [ATTGAATTCC] 190 (89.60)
7 - .ATTGACTTCG. 66 (97.00)
8 + [AGTTGCTTTT] 5 (86.43)
8 - [ATTGCCATCT] 46 (89.67)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 14 2 1 2| 8 1 0 1
2 0 0 2 17| 0 0 1 9
3 0 1 2 16| 0 0 1 9
4 1 0 16 2| 0 0 9 1
5 3 1 13 2| 2 0 7 1
6 1 14 2 2| 0 8 1 1
7 2 2 0 15| 0 1 0 9
8 0 4 1 14| 0 2 0 8
9 3 14 0 2| 2 8 0 0
10 3 3 8 5| 3 1 3 3






TATTGGCTTCGT
ACGAAGCCAATA

3 redundant motifs found:
ATTGGCTTCGTT - ATTGGCTTCG - TTGGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .TCTTGACTTCAT. 2 (93.17)
1 + [CATCGTCTTCTT] 23 (87.32)
1 + .AATTGGCTCAAT. 95 (92.50)
1 - [TGCTGCCTTCTT] 137 (86.95)
1 - [TCTTGGCTGTGT] 129 (87.97)
2 + [AAGTGGCATTGT] 83 (89.33)
2 + .TATTGGCTTCGT. 95 (100.00)
3 + [TATCGTATTCAT] 4 (89.69)
3 + [TTTTTACTTTTT] 171 (87.27)
3 - .TATTTTCTTTTT. 150 (90.78)
4 + [AATCTCCTCCGT] 75 (85.01)
4 + [AATTAGTTTAGT] 95 (87.02)
4 + [TAGTGCATTTGT] 107 (87.73)
4 - [ATTTGTCATTTT] 9 (86.32)
5 + [AATTTGCATATT] 105 (89.76)
5 - [ATTTATCTTCTT] 139 (87.40)
5 - .AATTGGGCTCGT. 97 (90.95)
5 - [TTTTAACTTCTT] 79 (89.01)
5 - [TTTTTTCTTTTT] 68 (86.73)
5 - [TATTGGGCTCCG] 1 (85.89)
6 - .AATTGGCTTCCT. 97 (97.08)
6 - .TATTTGAATCAT. 78 (90.69)
6 - [TTTGGGCTTCTG] 43 (85.46)
6 - [TTTTGCATTTTT] 4 (87.49)
7 + .AATTGGCTCAAT. 95 (92.50)
7 - [TATTGAATTCCC] 201 (87.71)
7 - .AATTGACTTCGT. 65 (96.71)
8 + [AAGTTGCTTTTT] 4 (88.14)
8 + [TATTGGCAAAAT] 95 (88.74)
8 - .AATTGCCATCTT. 45 (92.88)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 8 1 0 14| 6 0 0 4
2 17 2 2 2| 9 1 0 0
3 0 1 2 20| 0 0 0 10
4 0 2 1 20| 0 0 0 10
5 2 0 18 3| 0 0 8 2
6 4 3 13 3| 2 1 6 1
7 4 16 2 1| 1 8 1 0
8 4 2 0 17| 2 1 0 7
9 1 3 1 18| 0 2 0 8
10 4 15 0 4| 2 7 0 1
11 6 3 8 6| 4 1 3 2
12 1 1 2 19| 0 0 0 10






AGCCCA
TGGGCT

2 redundant motifs found:
AGCCCAGT - CTGGGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AGCCAA. 133 (99.17)
1 - .AGCCAA. 97 (99.17)
1 - .TGCCCA. 78 (94.10)
2 - .AGCCAA. 97 (99.17)
3 + .AGCCCA. 78 (100.00)
3 - .AGCAAA. 166 (95.21)
4 + [TGCAAA] 6 (89.31)
4 + .AGCAAA. 156 (95.21)
4 - [TGCAAA] 118 (89.31)
5 + .AGCCCA. 4 (100.00)
5 + [TGCAAA] 58 (89.31)
5 + .AGCCCA. 100 (100.00)
5 - [TGCAAA] 107 (89.31)
5 - .TGCACA. 56 (90.14)
5 - .AGCACA. 37 (96.04)
6 + [TGCAAA] 9 (89.31)
6 + .AGCCCA. 47 (100.00)
6 + .AGCCAA. 101 (99.17)
6 + .AGCACA. 128 (96.04)
7 + [TGCAAA] 170 (89.31)
7 - .AGCCAA. 97 (99.17)
8 - .TGCCAA. 97 (93.27)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 11 0 0 1| 13 0 0 3
2 0 0 12 0| 0 0 16 0
3 0 12 0 0| 0 16 0 0
4 2 10 0 0| 5 11 0 0
5 5 7 0 0| 8 8 0 0
6 12 0 0 0| 16 0 0 0






CTACCCCGCT
AGCGGGGTAG

3 redundant motifs found:
TACCCCGCTA - ACCCCGCT - TACCCCGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [CTTCTTCACC] 41 (88.25)
1 + .CTTCACCACT. 44 (93.69)
1 + [CTAATCAACA] 62 (87.23)
1 + .GTACCCCGCT. 161 (96.61)
1 + .CTACTCACCT. 189 (94.92)
1 - [CTGCCTTCTT] 137 (87.67)
1 - .CTGCCCAGTT. 75 (92.85)
2 + .CGACCTTGCT. 136 (91.72)
3 + [CTAATCCACA] 45 (88.72)
3 + .CTACCCCGCT. 56 (100.00)
3 - [GTCACCAACT] 92 (86.54)
4 + .CTACTTTCCT. 47 (91.53)
5 - .CTTCTCCCCC. 132 (92.77)
7 + .CTTCTCCCCT. 161 (95.95)
7 + .CTCCCCTGCA. 164 (93.07)
7 - .CTTACCCGCC. 122 (92.96)
7 - [CGTCTCCCTA] 58 (85.99)
8 + [CGAATTCCCT] 63 (86.24)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 8 1 0| 0 10 1 0
2 0 0 1 8| 0 0 1 10
3 4 1 1 3| 5 1 1 4
4 1 8 0 0| 1 10 0 0
5 1 6 0 2| 1 6 0 4
6 0 8 0 1| 0 9 0 2
7 2 5 0 2| 2 6 0 3
8 1 2 6 0| 1 4 6 0
9 0 8 0 1| 0 10 0 1
10 1 1 0 7| 1 2 0 8






GACGAAGTCAAT
ATTGACTTCGTC

5 redundant motifs found:
AACGAGCCCAAT - ACGAAGTCAATT - GAGGAAGCCAAT - GACGAAGTCA - ACGAAGTCAA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [AATCAACACAAA] 64 (87.09)
1 - [GATGATCACAAA] 106 (89.10)
1 - [TGAGAAGACACT] 83 (87.54)
1 - [GATTAGGCAAAA] 56 (85.83)
1 - [GGTGAAGAAGAA] 39 (86.77)
1 - .GAAGAAGAAGAA. 36 (91.14)
1 - .GAAGAAGAAGAA. 33 (91.14)
1 - .GAAGAAGAAGAA. 30 (91.14)
1 - .GAAGAAGACGAT. 24 (94.96)
1 - .GACGATGATGAT. 18 (90.90)
1 - [GATGATGATGAT] 15 (88.99)
1 - [GATGATGATGAT] 12 (88.99)
1 - [GATGATGATGAA] 9 (87.00)
1 - .GATGAAGTCAAG. 3 (95.49)
2 + .AAAGCAGTAAAT. 19 (92.80)
2 - [TGAGAATAAAAA] 147 (85.87)
2 - .AACGAAGCCAAT. 96 (97.61)
3 + [AGCCCAGTTAAT] 78 (86.32)
3 - [CACCAACTAAAT] 88 (89.42)
3 - [GGCTAATTCAAA] 70 (89.04)
3 - [TATGAATACGAT] 5 (88.40)
4 - [AACTAATTAACA] 91 (85.32)
4 - [TAACAAGTCACG] 84 (85.56)
4 - [GGAGATTCAAAA] 70 (86.31)
4 - [AAACATTTCACT] 61 (85.90)
5 + [TAAGAGTAAAAA] 44 (86.10)
5 + .AAAGAAGTTAAA. 78 (94.95)
5 + [AAAGAGTTAACG] 88 (85.49)
5 + .AACGAGCCCAAT. 96 (92.27)
5 + .GGAGAAGAAGAT. 135 (90.15)
5 + .GAAGAAGATAAA. 138 (93.99)
5 - [AAATATGCAAAT] 106 (88.50)
6 + [AATGATTCAAAT] 77 (89.14)
6 + .GAGGAAGCCAAT. 96 (96.41)
7 + .GACGAAGTCAAT. 64 (100.00)
7 + .CGGGAATTCAAT. 188 (91.02)
7 - .GATGAGGTAAAG. 41 (90.92)
8 + .AAAGATGGCAAT. 44 (92.68)
8 + [TACGAATTCCCT] 61 (86.80)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 5 2 8 1| 5 1 11 0
2 14 0 2 0| 15 0 2 0
3 5 7 2 2| 9 4 2 2
4 0 1 14 1| 0 0 17 0
5 15 1 0 0| 16 1 0 0
6 12 0 2 2| 13 0 2 2
7 0 2 11 3| 0 1 15 1
8 3 3 1 9| 7 3 1 6
9 3 10 0 3| 6 8 0 3
10 13 1 2 0| 11 0 6 0
11 15 1 0 0| 17 0 0 0
12 3 0 2 11| 5 0 2 10






TACCCC
GGGGTA

2 redundant motifs found:
TACCCCGC - GGGTAA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .TACCCC. 162 (100.00)
1 + [TACTCT] 185 (88.51)
1 + [TACTCA] 190 (88.51)
3 + .TACTCC. 22 (93.91)
3 + .TACCCC. 57 (100.00)
3 + .TAGCCC. 77 (93.91)
3 - .TACCCA. 114 (94.60)
4 + [TCCTCC] 79 (87.81)
5 - .TACCCC. 163 (100.00)
5 - .TCCCCC. 132 (93.91)
5 - [TACTCT] 46 (88.51)
6 - [TACTTC] 186 (87.81)
6 - [TACTCA] 158 (88.51)
6 - .TACCCT. 23 (94.60)
7 + [TCCCCA] 31 (88.51)
7 + .TACCTC. 44 (93.91)
7 + [TAGCTC] 76 (87.81)
7 + [TCCCCT] 165 (88.51)
7 - .TACCCG. 124 (94.60)
8 + [TCCCTC] 68 (87.81)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 0 0 10| 0 0 0 10
2 9 1 0 0| 9 1 0 0
3 0 9 1 0| 0 9 1 0
4 0 9 0 1| 0 9 0 1
5 0 9 0 1| 0 9 0 1
6 1 7 1 1| 1 7 1 1






AATTGGCTCA
TGAGCCAATT

3 redundant motifs found:
AAATTGGCTC - ATTGGCTC - AATTGGCT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATTGGCTCA. 95 (100.00)
1 - [AATTGAGCCA] 98 (89.37)
2 + [TATTGGCTTC] 95 (87.50)
2 + [AAATGAGTCA] 175 (89.06)
2 - .AAATGACTCA. 178 (92.78)
2 - [ATTTGACGAA] 49 (86.70)
3 + [ATTTGAATTA] 69 (86.30)
3 + .AATTAGCCCA. 74 (91.56)
3 + [ATTTGGGTAA] 111 (89.89)
3 - [ACTGGGCTAA] 76 (86.88)
4 + [AATTAGTTTA] 95 (89.13)
4 + [ACTAGGCGCA] 142 (86.01)
5 + [AATAGGAGCA] 15 (86.23)
5 + [AACTGGCGAA] 122 (85.19)
5 - [AATTGGGCTC] 99 (85.29)
5 - [ATTGGGCTCC] 2 (88.02)
6 + [AATAGTTTCA] 53 (88.84)
6 - .AATAGTCTTA. 165 (90.69)
6 - .ATTTGTCTAA. 140 (90.78)
6 - .AATTGGCTTC. 99 (93.52)
6 - [ATTTGAATCA] 79 (88.84)
7 + .AATTAGCTCT. 73 (90.51)
7 + .AATTGGCTCA. 95 (100.00)
7 - [AATTGAGCCA] 98 (89.37)
7 - .AATTGACTTC. 67 (91.11)
8 + [AATTCCCTCA] 65 (87.90)
8 + [TATTGGCAAA] 95 (85.58)
8 - [AAATATCTCA] 139 (88.42)
8 - .AATTCTCTCA. 116 (91.62)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 27 0 0 2| 10 0 0 0
2 22 2 0 5| 9 0 0 1
3 3 1 1 24| 1 0 0 9
4 4 0 3 22| 1 0 0 9
5 4 2 22 1| 2 1 7 0
6 6 1 17 5| 2 0 5 3
7 2 20 4 3| 0 10 0 0
8 2 3 3 21| 0 1 0 9
9 5 18 0 6| 1 6 0 3
10 22 4 1 2| 7 2 0 1






TGGCTTCGTTAA
TTAACGAAGCCA

3 redundant motifs found:
TTGGCTTCGTTA - ATTGGCTTCGTT - TGGCTTCGTT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TGACTTCATCAT] 5 (88.48)
1 + [TGTCTTCTCAAA] 85 (87.19)
2 + .TGGCATTGTTAT. 86 (90.02)
2 + .TGGCTTCGTTAA. 98 (100.00)
2 + [TGTATTCGAGAA] 163 (87.19)
2 - [TATTTTTCTTAA] 106 (86.83)
2 - [TTACTGCTTTAA] 17 (87.75)
3 + [TAGCCCAGTTAA] 77 (87.30)
3 + [AATTTTCGTTAA] 119 (89.67)
3 - [TATTTTCTTTTT] 150 (85.93)
3 - [TGAATACGATAA] 3 (87.42)
4 + [TAGTTTAGTTAG] 98 (88.54)
4 - [TAGATTAATCAA] 166 (85.71)
4 - .TAGCATTTTTAA. 38 (90.36)
4 - [TAGATTTGTCAT] 12 (86.66)
5 - .TGGGCTCGTTAA. 94 (92.40)
5 - [TAACTCTTTTAA] 85 (87.42)
5 - [TAACTTCTTTTT] 76 (88.70)
6 - .TGGCTTCCTCAA. 94 (93.31)
6 - [GGGCTTCTGTCA] 40 (85.45)
7 - [TGACTTCGTCTC] 62 (87.99)
8 + [GAGTTTCGTTTA] 85 (89.53)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 1 0 2 13| 0 0 0 5
2 5 0 10 1| 1 0 4 0
3 4 0 9 3| 0 0 5 0
4 2 10 1 3| 0 4 1 0
5 2 2 0 12| 2 1 0 2
6 1 1 1 13| 0 0 0 5
7 2 12 0 2| 0 3 0 2
8 1 1 10 4| 0 1 3 1
9 2 1 1 12| 0 0 0 5
10 1 3 1 11| 0 1 0 4
11 13 1 0 2| 5 0 0 0
12 12 1 1 2| 4 0 0 1