Your Weeder Web Results
NEW: Starting a large job on file /tmp/motif_master/62_WEEDER/aiy_100.fa
Organism code: CE
Processing both strands
/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/62_WEEDER/aiy_100.fa CE large S
Searching for motifs of length 6 with 1 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/62_WEEDER/aiy_100.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) ATTGGC 2.09
2) TTGGCT 1.72
3) AGCCCA 1.54
4) TCGTTA 1.51
5) GGCTTC 1.37
6) AATTAG 1.37
7) CTGGGC 1.37
8) CGAGCC 1.34
9) CGTTAA 1.34
10) CACAGC 1.24
Elapsed time : 0 min. 0 sec.
Searching for motifs of length 8 with 2 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/62_WEEDER/aiy_100.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) AATTGGCT 2.42
2) ATTGGCTC 2.34
3) GGCTTCGT 2.24
4) AACTGGGC 2.13
5) TATTGGCT 2.03
6) ATTGGCTT 2.01
7) TTGGCTTC 2.01
8) AGCCCAGT 1.98
9) TTAACGAG 1.96
10) TGGCTTCG 1.95
Elapsed time : 0 min. 1 sec.
Searching for motifs of length 10 with 3 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/62_WEEDER/aiy_100.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) TTGGCTTCGT 3.18
2) ATTGGCTTCG 2.95
3) AAATTGGCTC 2.64
4) AATTGGCTCA 2.47
5) GCTTCGTTAA 2.43
6) GAAGCCAATT 2.41
7) ACGAAGTCAA 2.41
8) AATTAGCCCA 2.39
9) CGAGCCCAAT 2.32
10) GGCTTCGTTA 2.30
Elapsed time : 0 min. 23 sec.
Searching for motifs of length 12 with 4 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/62_WEEDER/aiy_100.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) ATTGGCTTCGTT 4.50
2) TTGGCTTCGTTA 4.44
3) TATTGGCTTCGT 4.11
4) ATTGGCTCAATT 4.08
5) TGGCTTCGTTAA 3.94
6) AACGAGCCCAAT 3.90
7) AATTAGCCCAGT 3.82
8) AATTGGCTCAAT 3.79
9) ACGAAGTCAATT 3.71
10) TAACGAGCCCAA 3.66
Elapsed time : 2 min. 53 sec.
Your sequences:
Sequence 1 : >III:5795889..5795988
Sequence 2 : >X:11767528..11767627
Sequence 3 : >III:7833675..7833774
Sequence 4 : >II:10912813..10912912
Sequence 5 : >I:14142202..14142301
Sequence 6 : >X:7118584..7118683
Sequence 7 : >IV:3625782..3625881
Sequence 8 : >X:15292988..15293087
**** MY ADVICE ****
*** Interesting motifs (highest-ranking) seem to be :
ATTGGC
GCCAAT
5 redundant motifs found:
ATTGGCTT - TATTGGCT - ATTGGCTC - AATTGGCT - TTGGCT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [ACTGGG] 26 (88.03)
1 + .ATTGGC. 46 (100.00)
1 - .CTTGGC. 84 (93.91)
1 - [ATTGAG] 51 (87.81)
1 - [ATTAGG] 11 (89.96)
2 + .AGTGGC. 34 (94.12)
2 + .ATTGGC. 46 (100.00)
3 + .ATTAGC. 25 (96.05)
3 + [ATTTGG] 61 (88.26)
3 - [ATTAAC] 34 (89.96)
3 - [ACTGGG] 30 (88.03)
4 - [ATTAAC] 42 (89.96)
5 + .ATTTGC. 56 (94.35)
5 + .ACTGGC. 73 (94.12)
5 - .ATTGGG. 52 (93.91)
6 - .ATTGGC. 52 (100.00)
7 + .ATTAGC. 24 (96.05)
7 + .ATTGGC. 46 (100.00)
7 - [ATTGAG] 51 (87.81)
7 - .ATTGAC. 20 (93.91)
8 + [ATTTAC] 4 (88.26)
8 + .ATTGGC. 46 (100.00)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 12 | 1 | 0 | 0 | | | | 12 | 1 | 0 | 0 |
2 | | 0 | 1 | 1 | 11 | | | | 0 | 1 | 1 | 11 |
3 | | 0 | 0 | 0 | 13 | | | | 0 | 0 | 0 | 13 |
4 | | 2 | 0 | 10 | 1 | | | | 2 | 0 | 10 | 1 |
5 | | 1 | 0 | 12 | 0 | | | | 1 | 0 | 12 | 0 |
6 | | 0 | 12 | 1 | 0 | | | | 0 | 12 | 1 | 0 |
AATTGGCT
AGCCAATT
9 redundant motifs found:
GAAGCCAATT - AATTGGCTCA - AAATTGGCTC - ATTGGCTT - TTGGCTTC - TATTGGCT - ATTGGCTC - TTGGCT - ATTGGC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATTGGCT. 45 (100.00)
1 - [TCTTGGCT] 83 (88.44)
2 + .AATTTGTT. 9 (91.30)
2 + [AAGTGGCA] 33 (88.71)
2 + .TATTGGCT. 45 (94.64)
2 - [AATTATTT] 5 (86.02)
3 + .AATTAGCC. 24 (90.21)
3 + [ATTTAGTT] 38 (86.97)
3 + [ATTTGGGT] 61 (88.84)
3 + [AAGTGGTT] 86 (89.48)
3 - .AATTAACT. 33 (90.21)
3 - [ACTGGGCT] 28 (87.23)
4 + .AATTAGTT. 45 (92.08)
4 - [AATTAACA] 41 (85.25)
5 + .AATTTGCA. 55 (90.53)
5 - [ATTTATCT] 101 (85.11)
5 - [AATTGGGC] 51 (87.89)
5 - [ATTGGGCT] 50 (88.32)
6 - [ATTTGTCT] 92 (88.84)
6 - [ATTTTGTT] 83 (86.20)
6 - [AAATTGCT] 65 (87.30)
6 - [AATTGCTT] 64 (89.75)
6 - .AATTGGCT. 51 (100.00)
7 + .AATTAGCT. 23 (96.27)
7 + .AATTGGCT. 45 (100.00)
7 - .AATTGACT. 19 (93.94)
8 + [AATTCCCT] 15 (88.35)
8 + [TATTGGCA] 45 (89.67)
8 - [AATTCTCT] 68 (88.35)
8 - [AATTCGTA] 11 (85.25)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 22 | 0 | 0 | 3 | | | | 10 | 0 | 0 | 1 |
2 | | 20 | 2 | 0 | 3 | | | | 11 | 0 | 0 | 0 |
3 | | 1 | 1 | 2 | 21 | | | | 0 | 0 | 0 | 11 |
4 | | 0 | 0 | 2 | 23 | | | | 0 | 0 | 0 | 11 |
5 | | 4 | 2 | 16 | 3 | | | | 4 | 0 | 5 | 2 |
6 | | 2 | 2 | 19 | 2 | | | | 2 | 0 | 9 | 0 |
7 | | 0 | 19 | 2 | 4 | | | | 0 | 9 | 0 | 2 |
8 | | 3 | 2 | 1 | 19 | | | | 1 | 1 | 0 | 9 |
TTGGCTTCGT
ACGAAGCCAA
8 redundant motifs found:
TATTGGCTTCGT - TTGGCTTCGTTA - ATTGGCTTCGTT - GGCTTCGTTA - ATTGGCTTCG - TGGCTTCG - TTGGCTTC - GGCTTCGT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTGGCTCAAT. 47 (93.99)
1 + [TTGTGATCAT] 57 (86.45)
1 - .CTGCCTTCTT. 87 (91.17)
1 - .TTGGCTGTGT. 79 (93.99)
2 + [GTGGCATTGT] 35 (89.80)
2 + .TTGGCTTCGT. 47 (100.00)
3 + [TTAGCCCAGT] 26 (89.99)
3 + .TTAATTTAGT. 35 (90.19)
4 + .TTAGTTTAGT. 47 (92.60)
5 - .TTATCTTCTT. 89 (93.26)
5 - .TTGGGCTCGT. 47 (91.98)
5 - [TTAACTCTTT] 38 (89.67)
5 - .TTAACTTCTT. 29 (94.47)
6 - [CTAATTTTGT] 84 (85.48)
6 - .TTGGCTTCCT. 47 (96.88)
7 + .TTGGCTCAAT. 47 (93.99)
7 - .TTGACTTCGT. 15 (97.59)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 1 | 1 | 10 | | | | 0 | 1 | 0 | 11 |
2 | | 0 | 0 | 0 | 12 | | | | 0 | 0 | 0 | 12 |
3 | | 3 | 0 | 9 | 0 | | | | 4 | 0 | 8 | 0 |
4 | | 2 | 1 | 8 | 1 | | | | 3 | 1 | 7 | 1 |
5 | | 0 | 10 | 1 | 1 | | | | 0 | 9 | 1 | 2 |
6 | | 1 | 1 | 0 | 10 | | | | 0 | 1 | 0 | 11 |
7 | | 0 | 2 | 1 | 9 | | | | 0 | 2 | 1 | 9 |
8 | | 3 | 7 | 0 | 2 | | | | 4 | 7 | 0 | 1 |
9 | | 2 | 1 | 6 | 3 | | | | 2 | 1 | 6 | 3 |
10 | | 0 | 0 | 0 | 12 | | | | 0 | 0 | 0 | 12 |
ATTGGCTTCGTT
AACGAAGCCAAT
6 redundant motifs found:
TGGCTTCGTTAA - ATTGGCTCAATT - TATTGGCTTCGT - TTGGCTTCGTTA - ATTGGCTTCG - TTGGCTTCGT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [TTTTGCCTAATC] 6 (87.69)
1 + .ATTGGCTCAATT. 46 (97.14)
1 - [CTTGGCTGTGTG] 78 (87.87)
1 - [ATTGAGCCAATT] 45 (88.56)
2 + .AGTGGCATTGTT. 34 (94.91)
2 + .ATTGGCTTCGTT. 46 (100.00)
3 + .ATTAGCCCAGTT. 25 (94.10)
3 + [TTTGGGTAATTT] 62 (86.96)
4 + [TGTTAATTAGTT] 41 (85.62)
4 + .ATTAGTTTAGTT. 46 (94.57)
4 + [AGTGCATTTGTT] 58 (89.82)
5 + .ATTTGCATATTT. 56 (94.26)
5 - .ATTGGGCTCGTT. 46 (94.12)
5 - [TTTAACTTCTTT] 28 (89.53)
5 - [TTTTGCACATTT] 3 (88.58)
6 + [ATTAGACAAATC] 89 (86.13)
6 - .ATTTGTCTAATT. 88 (90.65)
6 - .ATTGGCTTCCTC. 46 (94.16)
6 - .ATTTGAATCATT. 27 (92.74)
7 + .ATTGGCTCAATT. 46 (97.14)
7 - [ATTGAGCCAATT] 45 (88.56)
7 - .ATTGACTTCGTC. 14 (94.60)
8 + .ATTGGCAAAATT. 46 (94.26)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 13 | 1 | 0 | 1 | | | | 13 | 0 | 0 | 0 |
2 | | 0 | 0 | 2 | 13 | | | | 0 | 0 | 1 | 12 |
3 | | 0 | 0 | 0 | 15 | | | | 0 | 0 | 0 | 13 |
4 | | 3 | 0 | 10 | 2 | | | | 2 | 0 | 8 | 3 |
5 | | 2 | 1 | 12 | 0 | | | | 1 | 0 | 12 | 0 |
6 | | 2 | 11 | 1 | 1 | | | | 1 | 9 | 1 | 2 |
7 | | 4 | 2 | 0 | 9 | | | | 4 | 3 | 0 | 6 |
8 | | 1 | 3 | 1 | 10 | | | | 1 | 3 | 0 | 9 |
9 | | 6 | 6 | 0 | 3 | | | | 7 | 5 | 0 | 1 |
10 | | 4 | 1 | 8 | 2 | | | | 5 | 1 | 6 | 1 |
11 | | 0 | 0 | 0 | 15 | | | | 0 | 0 | 0 | 13 |
12 | | 0 | 2 | 1 | 12 | | | | 0 | 2 | 0 | 11 |
*** Interesting motifs (not highest-ranking) can also be :
TTGGCT
AGCCAA
8 redundant motifs found:
ATTGGCTT - TTGGCTTC - TATTGGCT - ATTGGCTC - AATTGGCT - CGAGCC - GGCTTC - ATTGGC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTGCCT. 8 (93.68)
1 + [TGGGCA] 28 (88.50)
1 + .TTGGCT. 47 (100.00)
1 - .TTGGCT. 83 (100.00)
1 - [TTGTGT] 19 (86.86)
2 + .TTGGCT. 47 (100.00)
3 + .TTGGGT. 63 (93.18)
3 - [TTAACT] 33 (86.86)
3 - .TGGGCT. 28 (95.32)
5 - [TTATCT] 93 (86.86)
5 - .TGGGCT. 50 (95.32)
5 - [TTAACT] 42 (86.86)
5 - [TTAACT] 33 (86.86)
6 - .TTGTCT. 92 (93.68)
6 - .TTGGCT. 51 (100.00)
7 + .TTAGCT. 25 (93.18)
7 + .TTGGCT. 47 (100.00)
7 - .TTGACT. 19 (93.68)
8 + .TTGGCA. 47 (93.18)
8 - [TTGCCA] 48 (86.86)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 0 | 0 | 13 | | | | 0 | 0 | 0 | 13 |
2 | | 0 | 0 | 2 | 11 | | | | 0 | 0 | 2 | 11 |
3 | | 1 | 0 | 12 | 0 | | | | 1 | 0 | 12 | 0 |
4 | | 1 | 1 | 10 | 1 | | | | 1 | 1 | 10 | 1 |
5 | | 0 | 12 | 1 | 0 | | | | 0 | 12 | 1 | 0 |
6 | | 1 | 0 | 0 | 12 | | | | 1 | 0 | 0 | 12 |
ATTGGCTC
GAGCCAAT
7 redundant motifs found:
AATTGGCTCA - AAATTGGCTC - ATTGGCTT - TATTGGCT - AATTGGCT - TTGGCT - ATTGGC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [AGTGTCTT] 33 (87.14)
1 + .ATTGGCTC. 46 (100.00)
1 - .CTTGGCTG. 82 (90.02)
2 + [AGTGGCAT] 34 (86.93)
2 + .ATTGGCTT. 46 (97.81)
3 + .ATTAGCCC. 25 (91.30)
3 + [AGTGGTTC] 87 (88.92)
3 - [ATTAACTG] 32 (86.88)
4 + [ATTAGTTT] 46 (88.92)
5 - [TTGGGCTC] 49 (89.12)
6 - [ATTGCTTT] 63 (87.14)
6 - .ATTGGCTT. 50 (97.81)
7 + .ATTAGCTC. 24 (96.65)
7 + .ATTGGCTC. 46 (100.00)
7 - .ATTGACTT. 18 (92.68)
8 + .ATTCCCTC. 16 (91.51)
8 + [ATTCTTTC] 24 (85.98)
8 + .ATTGGCAA. 46 (90.02)
8 - .ATTCTCTC. 67 (91.51)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 11 | 1 | 0 | 1 | | | | 10 | 1 | 0 | 0 |
2 | | 0 | 0 | 1 | 12 | | | | 0 | 0 | 0 | 11 |
3 | | 0 | 0 | 1 | 12 | | | | 0 | 0 | 0 | 11 |
4 | | 2 | 2 | 9 | 0 | | | | 2 | 2 | 7 | 0 |
5 | | 1 | 1 | 10 | 1 | | | | 1 | 1 | 8 | 1 |
6 | | 0 | 12 | 0 | 1 | | | | 0 | 11 | 0 | 0 |
7 | | 1 | 1 | 0 | 11 | | | | 1 | 1 | 0 | 9 |
8 | | 1 | 8 | 1 | 3 | | | | 1 | 6 | 1 | 3 |
ATTGGCTTCG
CGAAGCCAAT
7 redundant motifs found:
TATTGGCTTCGT - ATTGGCTTCGTT - GAAGCCAATT - TTGGCTTCGT - TGGCTTCG - ATTGGCTT - TTGGCTTC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AGTGTCTTCT. 33 (92.23)
1 + .ATTGGCTCAA. 46 (94.86)
1 - .CTTGGCTGTG. 80 (91.13)
2 + .ATTTGTTTCT. 10 (92.42)
2 + .AGTGGCATTG. 34 (92.23)
2 + [ATTGTTATTG] 40 (88.87)
2 + .ATTGGCTTCG. 46 (100.00)
3 + [ATTAGCCCAG] 25 (89.53)
3 + .AGTGGTTCTG. 87 (91.30)
4 + .ATTAGTTTAG. 46 (93.08)
5 + [ATTTGCATAT] 56 (89.99)
5 - .ATTGGGCTCG. 48 (93.08)
5 - [CTTTTTTTCT] 22 (85.14)
6 - [ATTTGTCTAA] 90 (87.75)
6 - .ATTGGCTTCC. 48 (97.10)
7 + .ATTAGCTCTA. 24 (90.65)
7 + .ATTGGCTCAA. 46 (94.86)
7 - [ATTTTTTTTT] 87 (87.09)
7 - .ATTGACTTCG. 16 (96.45)
8 + [ATTTACATAC] 4 (85.32)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 10 | 1 | 0 | 0 | | | | 12 | 1 | 0 | 0 |
2 | | 0 | 0 | 2 | 9 | | | | 0 | 0 | 3 | 10 |
3 | | 0 | 0 | 0 | 11 | | | | 0 | 0 | 0 | 13 |
4 | | 1 | 0 | 9 | 1 | | | | 2 | 0 | 10 | 1 |
5 | | 1 | 0 | 9 | 1 | | | | 1 | 0 | 11 | 1 |
6 | | 0 | 8 | 1 | 2 | | | | 0 | 9 | 1 | 3 |
7 | | 1 | 1 | 0 | 9 | | | | 1 | 1 | 0 | 11 |
8 | | 0 | 2 | 1 | 8 | | | | 0 | 4 | 1 | 8 |
9 | | 3 | 6 | 0 | 2 | | | | 3 | 6 | 0 | 4 |
10 | | 2 | 1 | 6 | 2 | | | | 3 | 1 | 7 | 2 |
TTGGCTTCGTTA
TAACGAAGCCAA
4 redundant motifs found:
TGGCTTCGTTAA - ATTGGCTTCGTT - GGCTTCGTTA - TTGGCTTCGT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [TTTGCCTAATCA] 7 (89.49)
1 + .TTGGCTCAATTT. 47 (95.28)
1 - [TTGGCTGTGTGT] 77 (88.77)
1 - [TTGAGCCAATTT] 44 (87.33)
1 - .TTGTGTTGATTA. 13 (90.75)
2 + .GTGGCATTGTTA. 35 (91.77)
2 + .TTGGCTTCGTTA. 47 (100.00)
3 + .TTAGCCCAGTTA. 26 (93.44)
3 + [TTGGGTAATTTT] 63 (88.31)
3 + [TAATTTTCGTTA] 68 (88.91)
4 + .TTAGTTTAGTTA. 47 (95.38)
4 + [TTTGCAACATGA] 68 (85.85)
5 + [TTAAAAGAGTTA] 35 (85.85)
5 + [TTTGCATATTTT] 57 (88.96)
5 - [TTATCTTCTTCT] 87 (88.04)
5 - .TTGGGCTCGTTA. 45 (94.80)
5 - [TTAACTCTTTTA] 36 (88.45)
5 - .TTAACTTCTTTT. 27 (90.93)
5 - [TTTTTTTCTTTT] 19 (86.10)
5 - [TTTTCTTTTTTT] 16 (86.67)
5 - [TTTGCACATTTT] 2 (87.02)
6 - [TTTGTCTAATTT] 87 (88.31)
6 - [TTGTCTAATTTT] 86 (88.15)
6 - .TTGGCTTCCTCA. 45 (93.75)
6 - [TTATTTGAATCA] 29 (85.26)
6 - [TTTGAATCATTA] 26 (89.86)
7 + .TTGGCTCAATTC. 47 (93.04)
7 - [TTATATTTTTTT] 101 (85.19)
7 - [TTGAGCCAATTT] 44 (87.33)
7 - .TTGACTTCGTCT. 13 (92.88)
8 + .TTGGCAAAATTA. 47 (93.04)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 0 | 1 | 14 | | | | 0 | 0 | 1 | 11 |
2 | | 1 | 0 | 0 | 14 | | | | 0 | 0 | 0 | 12 |
3 | | 4 | 0 | 10 | 1 | | | | 3 | 0 | 9 | 0 |
4 | | 2 | 0 | 11 | 2 | | | | 2 | 0 | 9 | 1 |
5 | | 1 | 10 | 2 | 2 | | | | 0 | 9 | 2 | 1 |
6 | | 3 | 2 | 0 | 10 | | | | 2 | 2 | 0 | 8 |
7 | | 1 | 3 | 1 | 10 | | | | 1 | 3 | 0 | 8 |
8 | | 5 | 7 | 1 | 2 | | | | 5 | 5 | 1 | 1 |
9 | | 5 | 1 | 8 | 1 | | | | 4 | 1 | 6 | 1 |
10 | | 0 | 0 | 0 | 15 | | | | 0 | 0 | 0 | 12 |
11 | | 0 | 2 | 1 | 12 | | | | 0 | 2 | 0 | 10 |
12 | | 10 | 1 | 0 | 4 | | | | 8 | 1 | 0 | 3 |
AGCCCA
TGGGCT
2 redundant motifs found:
AGCCCAGT - CTGGGC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AGCCAA. 83 (100.00)
1 - .AGCCAA. 47 (100.00)
1 - .TGCCCA. 28 (94.33)
2 - .AGCCAA. 47 (100.00)
3 + .AGCCCA. 28 (99.45)
4 - [TGCAAA] 68 (89.76)
5 + [TGCAAA] 8 (89.76)
5 + .AGCCCA. 50 (99.45)
5 - [TGCAAA] 57 (89.76)
5 - [TGCACA] 6 (89.21)
6 + .AGCCAA. 51 (100.00)
6 + .AGCACA. 78 (94.33)
7 - .AGCCAA. 47 (100.00)
8 - .TGCCAA. 47 (94.88)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 8 | 0 | 0 | 1 | | | | 8 | 0 | 0 | 2 |
2 | | 0 | 0 | 9 | 0 | | | | 0 | 0 | 10 | 0 |
3 | | 0 | 9 | 0 | 0 | | | | 0 | 10 | 0 | 0 |
4 | | 1 | 8 | 0 | 0 | | | | 1 | 9 | 0 | 0 |
5 | | 5 | 4 | 0 | 0 | | | | 6 | 4 | 0 | 0 |
6 | | 9 | 0 | 0 | 0 | | | | 10 | 0 | 0 | 0 |
GGCTTCGT
ACGAAGCC
4 redundant motifs found:
GGCTTCGTTA - TTGGCTTCGT - TGGCTTCG - GGCTTC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [GGCAGTGT] 30 (89.50)
1 - .GCCTTCTT. 87 (91.75)
1 - .GGCTGTGT. 79 (93.76)
1 - [AGTTTTGT] 21 (89.78)
2 + .GGCATTGT. 37 (94.00)
2 + .GGCTTCGT. 49 (100.00)
2 - [GGTCGTGT] 83 (85.52)
4 + .GCATTTGT. 61 (90.29)
4 + .GGCTTTGA. 83 (93.76)
4 - [AGCCTTCT] 79 (85.24)
5 - .GGGCTCGT. 47 (91.75)
5 - [AACTTCTT] 29 (88.67)
6 - [AATTTTGT] 84 (87.21)
6 - .GGCTTCCT. 47 (95.74)
7 - .GACTTCGT. 15 (97.43)
8 + .AGTTTCGT. 36 (91.51)
8 + [GAATTTCT] 71 (87.45)
8 - .GAATTCGT. 12 (93.45)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 0 | 9 | 0 | | | | 1 | 0 | 10 | 0 |
2 | | 2 | 1 | 7 | 0 | | | | 2 | 2 | 7 | 0 |
3 | | 1 | 7 | 1 | 1 | | | | 2 | 7 | 1 | 1 |
4 | | 1 | 1 | 0 | 8 | | | | 1 | 1 | 0 | 9 |
5 | | 0 | 0 | 1 | 9 | | | | 0 | 0 | 1 | 10 |
6 | | 0 | 7 | 0 | 3 | | | | 0 | 7 | 0 | 4 |
7 | | 0 | 1 | 8 | 1 | | | | 0 | 1 | 9 | 1 |
8 | | 1 | 0 | 0 | 9 | | | | 1 | 0 | 0 | 10 |
AAATTGGCTC
GAGCCAATTT
3 redundant motifs found:
AATTGGCTCA - ATTGGCTC - AATTGGCT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AAATTGGCTC. 44 (100.00)
1 - .AAATTGAGCC. 49 (90.09)
2 + .AATTTGTTTC. 9 (91.64)
2 + [TTATTGGCTT] 44 (88.47)
2 - [AAATTATTTG] 4 (86.70)
3 + [GAATTAGCCC] 23 (89.60)
3 + [AATTTAGTTG] 37 (86.07)
3 + [CAAGTGGTTC] 85 (87.97)
3 - [AAATTAACTG] 32 (89.11)
3 - [AACTGGGCTA] 27 (85.26)
4 + [TAATTAGTTT] 44 (88.82)
5 - .AAATTGGGCT. 50 (90.96)
5 - .AATTGGGCTC. 49 (92.59)
6 + [AAATAGTTTC] 2 (89.39)
6 + [AAATAATCTT] 35 (86.86)
6 - [GATTTGTCTA] 101 (85.14)
6 - .AAATTGCTTT. 63 (92.31)
6 - .AAATTGGCTT. 50 (98.21)
6 - [AATTGGCTTC] 49 (86.69)
7 + .CAATTAGCTC. 22 (93.02)
7 + .AAATTGGCTC. 44 (100.00)
7 - [AATCCGGCTC] 59 (85.38)
7 - [GAATTGAGCC] 49 (86.26)
7 - .TAATTGACTT. 18 (91.73)
8 + [GAATTCCCTC] 14 (88.71)
8 + [AAATTATTCT] 53 (86.57)
8 - .AAATTCTCTC. 67 (93.36)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 13 | 2 | 2 | 2 | | | | 9 | 1 | 0 | 1 |
2 | | 18 | 0 | 0 | 1 | | | | 11 | 0 | 0 | 0 |
3 | | 15 | 1 | 0 | 3 | | | | 9 | 0 | 0 | 2 |
4 | | 0 | 1 | 1 | 17 | | | | 0 | 0 | 0 | 11 |
5 | | 1 | 1 | 2 | 15 | | | | 0 | 0 | 1 | 10 |
6 | | 3 | 2 | 14 | 0 | | | | 1 | 1 | 9 | 0 |
7 | | 3 | 2 | 11 | 3 | | | | 2 | 1 | 6 | 2 |
8 | | 0 | 13 | 2 | 4 | | | | 0 | 7 | 2 | 2 |
9 | | 0 | 3 | 0 | 16 | | | | 0 | 2 | 0 | 9 |
10 | | 1 | 12 | 1 | 5 | | | | 0 | 7 | 0 | 4 |
TATTGGCTTCGT
ACGAAGCCAATA
4 redundant motifs found:
AATTGGCTCAAT - ATTGGCTTCGTT - ATTGGCTTCG - TTGGCTTCGT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATTGGCTCAAT. 45 (95.57)
1 - [TGCTGCCTTCTT] 87 (87.57)
1 - .TCTTGGCTGTGT. 79 (91.00)
1 - [AATTGAGCCAAT] 46 (85.48)
2 + .AAGTGGCATTGT. 33 (93.90)
2 + .TATTGGCTTCGT. 45 (100.00)
3 + [AATTAGCCCAGT] 24 (89.98)
3 + [AGTTAATTTAGT] 33 (86.08)
3 + [ATTTGGGTAATT] 61 (85.69)
3 - [AATTACCCAAAT] 61 (85.33)
3 - [AACTGGGCTAAT] 25 (86.82)
4 + .AATTAGTTTAGT. 45 (92.59)
4 + .TAGTGCATTTGT. 57 (90.63)
4 + [TGTTTGCAACAT] 66 (85.62)
5 + .AATTTGCATATT. 55 (91.21)
5 - .AATTGGGCTCGT. 47 (92.53)
5 - [TTTTAACTTCTT] 29 (88.70)
6 + [AATTAGACAAAT] 88 (85.33)
6 - .AATTGGCTTCCT. 47 (96.84)
6 - .TATTTGAATCAT. 28 (90.63)
6 - [ATTTGAATCATT] 27 (85.33)
7 + .AATTGGCTCAAT. 45 (95.57)
7 - [AATTGAGCCAAT] 46 (85.48)
7 - .AATTGACTTCGT. 15 (97.39)
8 + .TATTGGCAAAAT. 45 (92.49)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 7 | 0 | 0 | 7 | | | | 8 | 0 | 0 | 5 |
2 | | 11 | 1 | 1 | 1 | | | | 12 | 1 | 0 | 0 |
3 | | 0 | 1 | 2 | 11 | | | | 0 | 0 | 2 | 11 |
4 | | 0 | 0 | 0 | 14 | | | | 0 | 0 | 0 | 13 |
5 | | 2 | 0 | 11 | 1 | | | | 1 | 0 | 10 | 2 |
6 | | 2 | 2 | 10 | 0 | | | | 1 | 1 | 11 | 0 |
7 | | 2 | 10 | 1 | 1 | | | | 2 | 9 | 1 | 1 |
8 | | 3 | 1 | 0 | 10 | | | | 4 | 1 | 0 | 8 |
9 | | 1 | 2 | 1 | 10 | | | | 1 | 2 | 1 | 9 |
10 | | 4 | 7 | 0 | 3 | | | | 5 | 5 | 0 | 3 |
11 | | 4 | 1 | 7 | 2 | | | | 4 | 1 | 7 | 1 |
12 | | 0 | 0 | 0 | 14 | | | | 0 | 0 | 0 | 13 |
TCGTTA
TAACGA
2 redundant motifs found:
TTAACGAG - CGTTAA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .TCGTTT. 3 (95.55)
2 + .TTGTTT. 12 (91.39)
2 + .TTGTTA. 41 (95.84)
2 + .TCGTTA. 53 (100.00)
2 + [TTGCTA] 91 (89.21)
2 - .TCGCTA. 66 (93.37)
2 - [TTCTTA] 57 (89.77)
2 - [TTATTT] 29 (85.32)
2 - [TTATTT] 5 (85.32)
3 + .TCGTTA. 74 (100.00)
4 + .TTGTTA. 40 (95.84)
4 + [TAATTA] 44 (87.85)
4 + [TAGTTT] 48 (89.47)
4 + .TAGTTA. 53 (93.92)
4 + .TTGTTT. 65 (91.39)
4 - [TAATTA] 44 (87.85)
5 - .TCGTTA. 45 (100.00)
5 - [TCTTTT] 37 (89.47)
5 - [TTCTTT] 28 (85.32)
5 - [TCTTTT] 27 (89.47)
5 - [TTTTTT] 25 (85.32)
5 - [TTTTTT] 24 (85.32)
5 - [TTCTTT] 20 (85.32)
5 - [TCTTTT] 19 (89.47)
5 - [TTTTTT] 17 (85.32)
5 - [TTTTTT] 16 (85.32)
5 - [TTTTTT] 15 (85.32)
5 - [TTTTTT] 14 (85.32)
5 - [TTTTTT] 13 (85.32)
5 - [TTTTTT] 12 (85.32)
5 - [TTTTTT] 11 (85.32)
6 + [TAGTTT] 5 (89.47)
6 - [TTATTT] 35 (85.32)
6 - .TCATTA. 26 (93.92)
7 - [TTTTTT] 90 (85.32)
7 - [TTTTTT] 89 (85.32)
7 - [TTTTTT] 88 (85.32)
7 - [TTTTTT] 87 (85.32)
7 - .TCCTTA. 78 (93.92)
7 - [TTTTTA] 41 (89.77)
7 - [TCCCTA] 8 (87.29)
8 + [TTCTTT] 25 (85.32)
8 + .TCGTTT. 40 (95.55)
8 + [TTCTTT] 59 (85.32)
8 + .TCTTTA. 60 (93.92)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 0 | 0 | 12 | | | | 0 | 0 | 0 | 14 |
2 | | 1 | 9 | 0 | 2 | | | | 1 | 9 | 0 | 4 |
3 | | 1 | 1 | 9 | 1 | | | | 1 | 1 | 11 | 1 |
4 | | 0 | 1 | 0 | 11 | | | | 0 | 1 | 0 | 13 |
5 | | 0 | 0 | 0 | 12 | | | | 0 | 0 | 0 | 14 |
6 | | 10 | 0 | 0 | 2 | | | | 10 | 0 | 0 | 4 |
AACTGGGC
GCCCAGTT
2 redundant motifs found:
AGCCCAGT - CTGGGC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AACTGGGC. 25 (100.00)
1 + .AAATTGGC. 44 (98.41)
1 - .AATTGAGC. 50 (96.85)
1 - .GATTAGGC. 10 (91.47)
2 + [AAATAGCG] 63 (87.68)
3 + .GAATTAGC. 23 (91.47)
3 + .AATTAGCC. 24 (91.47)
3 + [GATTTGGG] 60 (89.21)
3 + [AATTTTCG] 69 (85.30)
3 - .AAATTACC. 66 (91.47)
3 - .AACTGGGC. 29 (100.00)
4 + .GACTAGGC. 91 (92.01)
5 + .AAATGTGC. 3 (96.09)
5 + .AACTGGCG. 72 (91.34)
5 - .AAATATGC. 60 (92.43)
5 - .AAATTGGG. 52 (94.08)
5 - .AATTGGGC. 51 (99.46)
6 - .AAATTGGC. 52 (98.41)
7 + .AAATTGGC. 44 (98.41)
7 - .AATTGAGC. 50 (96.85)
8 - .AATTTTGC. 50 (93.96)
8 - [GAATGAGG] 20 (88.74)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 10 | 0 | 1 | 0 | | | | 15 | 0 | 3 | 0 |
2 | | 11 | 0 | 0 | 0 | | | | 18 | 0 | 0 | 0 |
3 | | 4 | 4 | 0 | 3 | | | | 8 | 4 | 0 | 6 |
4 | | 0 | 0 | 0 | 11 | | | | 0 | 0 | 0 | 18 |
5 | | 1 | 0 | 7 | 3 | | | | 4 | 0 | 7 | 7 |
6 | | 2 | 0 | 8 | 1 | | | | 4 | 0 | 11 | 3 |
7 | | 0 | 1 | 10 | 0 | | | | 0 | 3 | 15 | 0 |
8 | | 0 | 10 | 1 | 0 | | | | 0 | 16 | 2 | 0 |
AATTGGCTCA
TGAGCCAATT
5 redundant motifs found:
AATTGGCTCAAT - AATTAGCCCA - AAATTGGCTC - ATTGGCTC - AATTGGCT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATTGGCTCA. 45 (100.00)
1 - [AATTGAGCCA] 48 (89.23)
2 + [TATTGGCTTC] 45 (88.36)
2 - [ATTTTTCTTA] 57 (85.02)
3 + [ATTTGAATTA] 19 (85.02)
3 + .AATTAGCCCA. 24 (92.79)
3 + .ATTTGGGTAA. 61 (90.45)
3 - [ACTGGGCTAA] 26 (85.80)
4 + .AATTAGTTTA. 45 (90.72)
5 + [AATTTGCATA] 55 (86.45)
5 - [AATTGGGCTC] 49 (85.91)
6 + [AATAGTTTCA] 3 (86.32)
6 - .ATTTGTCTAA. 90 (91.43)
6 - .AATTGGCTTC. 49 (93.79)
6 - [ATTTGAATCA] 29 (87.23)
7 + .AATTAGCTCT. 23 (91.85)
7 + .AATTGGCTCA. 45 (100.00)
7 - [AATTGAGCCA] 48 (89.23)
7 - .AATTGACTTC. 17 (90.89)
8 + [AATTCCCTCA] 15 (89.10)
8 + [TATTGGCAAA] 45 (87.42)
8 - [AAATATCTCA] 89 (86.98)
8 - .AATTCTCTCA. 66 (92.30)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 21 | 0 | 0 | 2 | | | | 10 | 0 | 0 | 0 |
2 | | 18 | 1 | 0 | 4 | | | | 8 | 0 | 0 | 2 |
3 | | 1 | 1 | 1 | 20 | | | | 0 | 0 | 0 | 10 |
4 | | 1 | 0 | 2 | 20 | | | | 0 | 0 | 0 | 10 |
5 | | 4 | 2 | 16 | 1 | | | | 3 | 1 | 6 | 0 |
6 | | 4 | 1 | 14 | 4 | | | | 1 | 0 | 7 | 2 |
7 | | 1 | 16 | 3 | 3 | | | | 0 | 8 | 1 | 1 |
8 | | 2 | 3 | 1 | 17 | | | | 0 | 1 | 0 | 9 |
9 | | 5 | 13 | 0 | 5 | | | | 2 | 5 | 0 | 3 |
10 | | 17 | 3 | 1 | 2 | | | | 7 | 2 | 0 | 1 |
CTGGGC
GCCCAG
3 redundant motifs found:
AGCCCAGT - AACTGGGC - AGCCCA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .CTGGGC. 27 (100.00)
1 - .CTTGGC. 84 (97.30)
1 - .TTAGGC. 10 (93.90)
3 - .CTGGGC. 29 (100.00)
4 + .CTAGGC. 93 (97.30)
5 - .TTGGGC. 51 (96.59)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 4 | 0 | 1 | | | | 0 | 4 | 0 | 2 |
2 | | 0 | 0 | 0 | 5 | | | | 0 | 0 | 0 | 6 |
3 | | 1 | 0 | 3 | 1 | | | | 2 | 0 | 3 | 1 |
4 | | 0 | 0 | 5 | 0 | | | | 0 | 0 | 6 | 0 |
5 | | 0 | 0 | 5 | 0 | | | | 0 | 0 | 6 | 0 |
6 | | 0 | 5 | 0 | 0 | | | | 0 | 6 | 0 | 0 |
TATTGGCT
AGCCAATA
6 redundant motifs found:
ATTGGCTT - TTGGCTTC - ATTGGCTC - AATTGGCT - TTGGCT - ATTGGC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTTTGCCT. 6 (92.37)
1 + .AATTGGCT. 45 (100.00)
1 - .TCTTGGCT. 83 (95.98)
2 + .TATTGGCT. 45 (99.59)
3 - .AATTAACT. 33 (92.54)
4 - [AATTAACA] 41 (88.68)
5 - [TTTTAACT] 33 (88.52)
6 - .AATTGGCT. 51 (100.00)
7 + .AATTAGCT. 23 (96.14)
7 + .AATTGGCT. 45 (100.00)
7 - .AATTGACT. 19 (96.39)
8 + .TATTGGCA. 45 (95.73)
8 - [TTTTGCCA] 48 (88.52)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 5 | 0 | 0 | 4 | | | | 6 | 0 | 0 | 4 |
2 | | 7 | 1 | 0 | 1 | | | | 8 | 1 | 0 | 1 |
3 | | 0 | 0 | 0 | 9 | | | | 0 | 0 | 0 | 10 |
4 | | 0 | 0 | 0 | 9 | | | | 0 | 0 | 0 | 10 |
5 | | 1 | 0 | 8 | 0 | | | | 2 | 0 | 8 | 0 |
6 | | 1 | 1 | 7 | 0 | | | | 2 | 1 | 7 | 0 |
7 | | 0 | 9 | 0 | 0 | | | | 0 | 10 | 0 | 0 |
8 | | 1 | 0 | 0 | 8 | | | | 1 | 0 | 0 | 9 |
GCTTCGTTAA
TTAACGAAGC
2 redundant motifs found:
TGGCTTCGTTAA - GGCTTCGTTA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .GTCTTCTCAA. 36 (90.45)
1 - [GCCCAGTTTT] 23 (87.76)
2 + [TGTTTCTCAA] 13 (86.12)
2 + .GCATTGTTAT. 38 (92.73)
2 + .GCTTCGTTAA. 50 (100.00)
2 - .TTTTTCTTAA. 56 (91.28)
3 + .GCCCAGTTAA. 29 (94.30)
3 + .TTTTCGTTAA. 71 (96.15)
4 + .GACTTGTTAA. 37 (95.43)
4 + .GTTTAGTTAG. 50 (94.88)
4 - [GCCTTCTCAT] 76 (87.76)
5 - .GGCTCGTTAA. 44 (96.92)
6 - [GATTTGTCTA] 101 (89.50)
6 - .GCTTCCTCAA. 44 (93.24)
8 + .GTTTCGTTTA. 37 (96.15)
8 + [TTATTCTTTA] 56 (85.29)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 0 | 8 | 1 | | | | 0 | 0 | 9 | 2 |
2 | | 1 | 4 | 1 | 3 | | | | 1 | 4 | 1 | 5 |
3 | | 1 | 3 | 0 | 5 | | | | 1 | 4 | 0 | 6 |
4 | | 0 | 1 | 0 | 8 | | | | 0 | 1 | 0 | 10 |
5 | | 2 | 5 | 0 | 2 | | | | 2 | 5 | 0 | 4 |
6 | | 0 | 1 | 8 | 0 | | | | 0 | 3 | 8 | 0 |
7 | | 0 | 0 | 0 | 9 | | | | 0 | 0 | 0 | 11 |
8 | | 0 | 1 | 0 | 8 | | | | 0 | 2 | 0 | 9 |
9 | | 8 | 0 | 0 | 1 | | | | 10 | 0 | 0 | 1 |
10 | | 7 | 0 | 1 | 1 | | | | 9 | 0 | 1 | 1 |
TGGCTTCGTTAA
TTAACGAAGCCA
4 redundant motifs found:
TTGGCTTCGTTA - ATTGGCTTCGTT - GGCTTCGTTA - GCTTCGTTAA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [TGTCTTCTCAAA] 35 (89.98)
2 + .TGGCATTGTTAT. 36 (92.17)
2 + .TGGCTTCGTTAA. 48 (100.00)
2 - .TATTTTTCTTAA. 56 (91.45)
3 + .TAGCCCAGTTAA. 27 (93.15)
3 + .AATTTTCGTTAA. 69 (94.06)
4 + .TAGTTTAGTTAG. 48 (94.24)
4 - [AAGCCTTCTCAT] 76 (85.30)
5 - [TATCTTCTTCTC] 86 (88.84)
5 - .TGGGCTCGTTAA. 44 (95.92)
5 - [TAACTCTTTTAA] 35 (88.51)
5 - [TAACTTCTTTTT] 26 (89.59)
6 - .TGGCTTCCTCAA. 44 (95.53)
7 - [TATTTTTTTTTC] 86 (86.98)
7 - .TGACTTCGTCTC. 12 (91.24)
8 + .GAGTTTCGTTTA. 35 (93.88)
8 - [TAATTTTGCCAA] 47 (88.68)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 0 | 1 | 8 | | | | 1 | 0 | 1 | 8 |
2 | | 4 | 0 | 6 | 0 | | | | 5 | 0 | 5 | 0 |
3 | | 1 | 0 | 7 | 2 | | | | 1 | 0 | 7 | 2 |
4 | | 0 | 6 | 1 | 3 | | | | 0 | 5 | 1 | 4 |
5 | | 1 | 2 | 0 | 7 | | | | 1 | 2 | 0 | 7 |
6 | | 0 | 1 | 0 | 9 | | | | 0 | 1 | 0 | 9 |
7 | | 2 | 7 | 0 | 1 | | | | 2 | 6 | 0 | 2 |
8 | | 0 | 1 | 8 | 1 | | | | 0 | 2 | 8 | 0 |
9 | | 0 | 1 | 0 | 9 | | | | 0 | 0 | 0 | 10 |
10 | | 1 | 2 | 0 | 7 | | | | 0 | 2 | 0 | 8 |
11 | | 8 | 0 | 0 | 2 | | | | 8 | 0 | 0 | 2 |
12 | | 7 | 1 | 1 | 1 | | | | 7 | 1 | 1 | 1 |