Your Weeder Web Results
NEW: Starting a large job on file /tmp/motif_master/82_WEEDER/aiy_300.fa
Organism code: CE
Processing both strands
/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/82_WEEDER/aiy_300.fa CE large S
Searching for motifs of length 6 with 1 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/82_WEEDER/aiy_300.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) CTGCTC 1.43
2) CCCGCT 1.37
3) ATTGGC 1.31
4) AAAAAT 1.31
5) AGCCCA 1.25
6) GGGTAA 1.19
7) ACTGGG 1.13
8) ATGAGG 1.12
9) GACTTC 1.11
10) TACCCC 1.10
Elapsed time : 0 min. 0 sec.
Searching for motifs of length 8 with 2 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/82_WEEDER/aiy_300.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) AATTGGCT 1.91
2) GGCTTCGT 1.82
3) AATTAGCT 1.72
4) ATTGGCTC 1.71
5) AACTGGGC 1.71
6) GGCTCAAT 1.68
7) GTCATGAC 1.63
8) TACCCCGC 1.61
9) ACGAAGTC 1.61
10) GATTAATC 1.61
Elapsed time : 0 min. 3 sec.
Searching for motifs of length 10 with 3 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/82_WEEDER/aiy_300.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) TTGGCTTCGT 2.39
2) AAATTGGCTC 2.34
3) ATTGGCTTCG 2.29
4) GAAGGCATTG 2.17
5) ACGAAGTCAA 2.16
6) AATTGGCTCA 2.10
7) CTACCCCGCT 2.04
8) TACCCCGCTA 2.03
9) GCATTGAGCC 2.03
10) GCTTTTTACT 2.01
Elapsed time : 1 min. 25 sec.
Searching for motifs of length 12 with 4 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/82_WEEDER/aiy_300.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) ATTGGCTTCGTT 3.77
2) TTGGCTTCGTTA 3.59
3) GAGGAAGCCAAT 3.57
4) GACGAAGTCAAT 3.55
5) TATTGGCTTCGT 3.45
6) TGAGGAAGCCAA 3.38
7) GAAGGCATTGAG 3.34
8) GTGAAGGCATTG 3.34
9) AACGAGCCCAAT 3.25
10) ATTGGCTCAATT 3.24
Elapsed time : 11 min. 56 sec.
Your sequences:
Sequence 1 : >III:5795789..5796088
Sequence 2 : >X:11767428..11767727
Sequence 3 : >III:7833575..7833874
Sequence 4 : >II:10912713..10913012
Sequence 5 : >I:14142102..14142401
Sequence 6 : >X:7118484..7118783
Sequence 7 : >IV:3625682..3625981
Sequence 8 : >X:15292888..15293187
**** MY ADVICE ****
*** Interesting motifs (highest-ranking) seem to be :
AATTGGCT
AGCCAATT
5 redundant motifs found:
AATTGGCTCA - AAATTGGCTC - ATTGGCTC - AATTAGCT - ATTGGC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATTGGCT. 145 (100.00)
1 - [CATTGGCT] 261 (88.12)
2 + [AATTTGTT] 109 (88.45)
2 + [AAGTGGCA] 133 (85.27)
2 + .TATTGGCT. 145 (91.74)
2 + [AAATCGCT] 279 (85.83)
2 - [AAATGACT] 230 (87.39)
2 - [AATTGTCG] 26 (85.21)
3 + [AATTAGCC] 124 (87.27)
3 + [ATTTGGGT] 161 (85.18)
3 + [AAGTGGTT] 186 (86.11)
3 - [AATTAACT] 133 (89.39)
4 + [AATTAGTT] 145 (89.05)
4 + [AAATGTCT] 272 (87.39)
4 - [AATTGAAT] 237 (85.32)
4 - .AATTGGAT. 34 (90.98)
5 + .AATTAGCT. 31 (95.05)
5 + [AATTTGCA] 155 (87.61)
6 - [ATTTGTCT] 192 (87.20)
6 - [AAATTGCT] 165 (87.51)
6 - [AATTGCTT] 164 (86.65)
6 - .AATTGGCT. 151 (100.00)
7 + .AATTAGCT. 123 (95.05)
7 + .AATTGGCT. 145 (100.00)
7 - .AATTGACT. 119 (94.33)
8 + [AATATGCT] 30 (85.04)
8 + [AAGTTGCT] 54 (86.57)
8 + [AATTCCCT] 115 (85.43)
8 - [AATTAGTT] 221 (89.05)
8 - [AATTCTCT] 168 (87.11)
8 - [AATTGCCA] 99 (85.81)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 37 | 1 | 0 | 3 | | | | 7 | 0 | 0 | 1 |
2 | | 35 | 2 | 0 | 4 | | | | 8 | 0 | 0 | 0 |
3 | | 4 | 1 | 3 | 33 | | | | 0 | 0 | 0 | 8 |
4 | | 2 | 1 | 3 | 35 | | | | 0 | 0 | 0 | 8 |
5 | | 6 | 3 | 27 | 5 | | | | 2 | 0 | 6 | 0 |
6 | | 5 | 3 | 28 | 5 | | | | 1 | 0 | 7 | 0 |
7 | | 2 | 31 | 3 | 5 | | | | 1 | 7 | 0 | 0 |
8 | | 4 | 3 | 2 | 32 | | | | 0 | 0 | 0 | 8 |
TTGGCTTCGT
ACGAAGCCAA
5 redundant motifs found:
TATTGGCTTCGT - TTGGCTTCGTTA - ATTGGCTTCGTT - ATTGGCTTCG - GGCTTCGT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTGTCTCTGT. 43 (93.64)
1 + .TTGACTTCAT. 54 (95.37)
1 + [TCATCATCGT] 69 (86.13)
1 + .TCGTCTTCTT. 75 (92.55)
1 + [TCTTCTTCTT] 78 (89.65)
1 + [TCTTCTTCTT] 81 (89.65)
1 + [TCTTCTTCTT] 84 (89.65)
1 + [TCTTCTTCTT] 87 (89.65)
1 + [TTTGCCTAAT] 107 (87.11)
1 + [TGGGCAGTGT] 128 (85.88)
1 + .TTGGCTCAAT. 147 (93.10)
1 + [TTGTGATCAT] 157 (88.15)
1 - .CTGCCTTCTT. 187 (91.17)
1 - .TTGGCTGTGT. 179 (92.90)
2 + [CTGATTTCTT] 13 (88.06)
2 + [GTGGCATTGT] 135 (88.60)
2 + .TTGGCTTCGT. 147 (100.00)
2 + [TTGCTATTTT] 191 (86.36)
2 + [TCAACTCTGT] 206 (85.23)
2 - [CTGTTTTTTT] 243 (86.27)
2 - [TGTTTTTTTT] 242 (85.45)
2 - [TTTTTTTCGA] 238 (86.04)
2 - [TGTTTTTTTT] 87 (85.45)
2 - [TTTACTGCTT] 70 (89.36)
3 + [TTATTATCGT] 50 (87.33)
3 + [TTAGCCCAGT] 126 (87.18)
3 + [TTAATTTAGT] 135 (87.95)
3 + .TTTGCTTTTT. 216 (94.42)
3 + [TTGCTTTTTA] 217 (85.06)
3 + .TTTACTTTTT. 223 (91.87)
3 + [TTACTTTTTT] 224 (87.36)
3 + [TTTTTTCCAT] 229 (87.13)
3 + [TTTCCATTTT] 232 (87.26)
3 + [TGTTCATCGT] 281 (88.04)
3 - .TTTTCTTTTT. 200 (92.37)
3 - [TTTCTTTTTT] 199 (87.36)
4 + [TCTCCTCCGT] 127 (86.82)
4 + .TTAGTTTAGT. 147 (90.49)
4 + [TTTAGTTAGT] 151 (87.95)
4 - [TTTTCCTTGT] 265 (87.65)
4 - [TGTTCTTTGT] 258 (89.65)
4 - [TTTGCTCCGA] 202 (89.88)
4 - [GTAGCATTTT] 91 (85.31)
4 - .TTGTCATTTT. 59 (91.37)
5 + .TTTGCATATT. 157 (90.01)
5 + [GTAGCTTTTT] 201 (89.22)
5 - [TTGAGCTTTT] 271 (85.86)
5 - .TGAGCTTTTT. 270 (91.31)
5 - [TTTTCCTCAT] 253 (87.85)
5 - [TTTCCTCATT] 252 (88.65)
5 - [TTTTCTTCAA] 243 (87.77)
5 - .TTATCTTCTT. 189 (94.66)
5 - .TTGGGCTCGT. 147 (91.08)
5 - [TTAACTCTTT] 138 (89.85)
5 - .TTAACTTCTT. 129 (94.17)
5 - .TTTTTTTCTT. 121 (90.85)
5 - [TTTTTTCTTT] 120 (86.54)
5 - .TTTTCTTTTT. 118 (92.37)
5 - [TTTCTTTTTT] 117 (87.36)
5 - [TTTTTTTTTT] 113 (88.56)
5 - [TTTTTTTTTT] 112 (88.56)
5 - [TTTTTTTTTT] 111 (88.56)
5 - [TTTGCACATT] 104 (87.99)
5 - .TGGGCTCCGT. 50 (94.87)
6 - .TTGGCTTCCT. 147 (96.01)
6 - .TGGGCTTCTG. 93 (91.31)
6 - .TTTGCATTTT. 55 (90.51)
6 - [TTTTCTGATT] 48 (87.06)
6 - [TGATTTTCAT] 43 (86.04)
6 - [TCTGCTTTTT] 29 (89.40)
6 - [CTGCTTTTTT] 28 (85.06)
6 - .TTGTGTTCTT. 20 (93.76)
6 - [TGTGTTCTTT] 19 (85.48)
7 + [TTTACCTCAT] 92 (87.36)
7 + .TTGGCTCAAT. 147 (93.10)
7 - [TTTTTTTCTA] 184 (85.66)
7 - .TTGACTTCGT. 115 (97.46)
7 - [TCGTCTCCCT] 109 (86.93)
7 - [TCGATTTTTT] 57 (85.95)
7 - [TTGAGCTTTT] 23 (85.86)
7 - [TGAGCTTTTG] 22 (86.11)
8 + [GTTGCTTTTT] 56 (89.22)
8 + [TTGCTTTTTA] 57 (85.06)
8 + [TTACTTTCAT] 64 (87.95)
8 + [TTTCGTTTAT] 138 (85.66)
8 - [TTAGTTGTGT] 217 (86.18)
8 - .TGTGTTTCGT. 212 (90.18)
8 - [TGTATTCCGT] 202 (85.61)
8 - .TTGCCATCTT. 95 (92.46)
8 - [CTTGCTTTAT] 84 (87.52)
8 - [TTGCTTTATT] 83 (89.76)
8 - [TTGTTTTAAT] 46 (89.26)
8 - .TTAGCATATT. 30 (90.01)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 1 | 1 | 20 | | | | 0 | 1 | 0 | 28 |
2 | | 0 | 1 | 3 | 18 | | | | 0 | 1 | 4 | 24 |
3 | | 3 | 0 | 16 | 3 | | | | 5 | 0 | 16 | 8 |
4 | | 3 | 2 | 13 | 4 | | | | 4 | 2 | 15 | 8 |
5 | | 0 | 18 | 2 | 2 | | | | 0 | 24 | 2 | 3 |
6 | | 2 | 1 | 0 | 19 | | | | 5 | 1 | 0 | 23 |
7 | | 0 | 5 | 1 | 16 | | | | 0 | 4 | 1 | 24 |
8 | | 3 | 15 | 0 | 4 | | | | 5 | 15 | 0 | 9 |
9 | | 3 | 1 | 10 | 8 | | | | 3 | 1 | 8 | 17 |
10 | | 1 | 0 | 1 | 20 | | | | 0 | 0 | 1 | 28 |
ATTGGCTTCGTT
AACGAAGCCAAT
5 redundant motifs found:
ATTGGCTCAATT - TATTGGCTTCGT - TTGGCTTCGTTA - ATTGGCTTCG - TTGGCTTCGT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [TTTGTCTCTGTC] 42 (86.79)
1 + [CTTGACTTCATC] 53 (88.03)
1 + [ATCGTCTTCTTC] 74 (87.88)
1 + [TTTTGCCTAATC] 106 (85.86)
1 + .ATTGGCTCAATT. 146 (93.39)
1 - [CTTGGCTGTGTG] 178 (85.37)
2 + [ACTGATTTCTTT] 12 (87.90)
2 + .AGTGGCATTGTT. 134 (90.99)
2 + .ATTGGCTTCGTT. 146 (100.00)
2 - [ATGTTTTTTTTT] 86 (87.68)
2 - .ATTTACTGCTTT. 69 (92.14)
3 + [ATTAGCCCAGTT] 125 (89.64)
3 + [ATTTGGGTAATT] 161 (85.82)
3 + [TTTGGGTAATTT] 162 (85.40)
3 + .TTTTACTTTTTT. 222 (90.91)
3 + [TTTTTTTCCATT] 228 (85.99)
3 + [TTTTCCATTTTT] 231 (87.08)
3 + [ATTTTTTGTTTT] 237 (86.99)
3 + .ATGTTCATCGTT. 280 (91.27)
3 - [ATGAACATTTTT] 276 (87.12)
3 - .ATTTTCTTTTTT. 199 (93.66)
3 - [TTTTCTTTTTTT] 198 (86.18)
3 - [AGGGTCATTGTT] 13 (85.68)
4 + .ATTAGTTTAGTT. 146 (92.14)
4 - .ATTTTCCTTGTT. 264 (91.36)
4 - [AGTAGCATTTTT] 90 (87.67)
4 - [TTTGTCATTTTG] 58 (85.43)
5 + .ATTTGCATATTT. 156 (93.89)
5 - [TTTGAGCTTTTT] 270 (85.66)
5 - [CTTTTCCTCATT] 252 (87.18)
5 - [TTTTCCTCATTT] 251 (86.58)
5 - [TTTTTCTTCAAT] 242 (85.73)
5 - [TTTATCTTCTTC] 188 (88.22)
5 - .ATTGGGCTCGTT. 146 (93.51)
5 - .TTTAACTTCTTT. 128 (91.52)
5 - [CTTTTTTTCTTT] 120 (88.26)
5 - [TTTTTTTCTTTT] 119 (85.16)
5 - .TTTTTCTTTTTT. 117 (90.91)
5 - [TTTTCTTTTTTT] 116 (86.18)
5 - [CTTTTTTTTTTT] 112 (86.18)
5 - [TTTTTTTTTTTT] 111 (87.83)
5 - [TTTTGCACATTT] 103 (88.47)
5 - [ATTGGGCTCCGT] 50 (85.24)
5 - [TTGGGCTCCGTG] 49 (87.12)
6 - [ATTTGTCTAATT] 188 (88.84)
6 - [TTTGTCTAATTT] 187 (86.58)
6 - .ATTGGCTTCCTC. 146 (93.19)
6 - .ATTTGAATCATT. 127 (90.40)
6 - [TTGGGCTTCTGT] 92 (88.98)
6 - .TTTTGCATTTTT. 54 (91.14)
6 - [TTTTTCTGATTT] 47 (87.31)
6 - .TTTGTGTTCTTT. 19 (90.64)
7 + .ATTGGCTCAATT. 146 (93.39)
7 - [ATGTGCGTCTTT] 199 (89.84)
7 - [TTTATATTTTTT] 190 (85.12)
7 - .ATTGACTTCGTC. 114 (94.29)
7 - [ATGGAGATTTTT] 66 (86.24)
8 + [ATTGGCAAAATT] 146 (88.32)
8 - [ATTAGTTGTGTT] 216 (88.54)
8 - .TTGTGTTTCGTT. 211 (90.02)
8 - .ATTGCCATCTTT. 94 (93.16)
8 - [TCTTGCTTTATT] 83 (86.06)
8 - [CTTGCTTTATTT] 82 (85.78)
8 - [CTTGTTTTAATT] 45 (86.18)
8 - [TTTAGCATATTG] 29 (85.13)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 23 | 2 | 1 | 5 | | | | 15 | 0 | 0 | 6 |
2 | | 0 | 1 | 2 | 28 | | | | 0 | 0 | 1 | 20 |
3 | | 0 | 1 | 5 | 25 | | | | 0 | 0 | 2 | 19 |
4 | | 4 | 0 | 18 | 9 | | | | 2 | 0 | 9 | 10 |
5 | | 5 | 2 | 19 | 5 | | | | 4 | 1 | 11 | 5 |
6 | | 2 | 22 | 3 | 4 | | | | 1 | 16 | 2 | 2 |
7 | | 6 | 4 | 1 | 20 | | | | 6 | 2 | 0 | 13 |
8 | | 1 | 5 | 3 | 22 | | | | 0 | 2 | 1 | 18 |
9 | | 6 | 19 | 0 | 6 | | | | 4 | 11 | 0 | 6 |
10 | | 5 | 2 | 14 | 10 | | | | 3 | 1 | 8 | 9 |
11 | | 1 | 0 | 2 | 28 | | | | 0 | 0 | 0 | 21 |
12 | | 0 | 4 | 2 | 25 | | | | 0 | 2 | 0 | 19 |
*** Interesting motifs (not highest-ranking) can also be :
AAATTGGCTC
GAGCCAATTT
3 redundant motifs found:
AATTGGCTCA - ATTGGCTC - AATTGGCT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AAATTGGCTC. 144 (100.00)
1 - [AAATTGAGCC] 149 (85.46)
2 + [AATTTGTTTC] 109 (85.00)
2 + [AAAATGAGTC] 224 (87.18)
2 - .AAAATGACTC. 229 (92.04)
3 - [AAATTAACTG] 132 (85.96)
4 + .AAAATGTCTC. 271 (90.85)
4 - .AAATTGGATT. 33 (91.23)
5 + .AAATTAGCTC. 30 (94.88)
5 - [AAATTGGGCT] 150 (85.76)
5 - [AATTGGGCTC] 149 (88.09)
6 - [AAATTGCTTT] 163 (86.67)
6 - .AAATTGGCTT. 150 (96.93)
7 + [CAATTAGCTC] 122 (87.49)
7 + .AAATTGGCTC. 144 (100.00)
7 - [TAATTGACTT] 118 (87.35)
8 - [AAATTCTCTC] 167 (89.48)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 25 | 2 | 2 | 3 | | | | 7 | 0 | 0 | 0 |
2 | | 30 | 1 | 0 | 1 | | | | 7 | 0 | 0 | 0 |
3 | | 27 | 1 | 0 | 4 | | | | 7 | 0 | 0 | 0 |
4 | | 5 | 2 | 1 | 24 | | | | 2 | 0 | 0 | 5 |
5 | | 2 | 1 | 3 | 26 | | | | 0 | 0 | 0 | 7 |
6 | | 4 | 3 | 23 | 2 | | | | 1 | 0 | 6 | 0 |
7 | | 6 | 3 | 19 | 4 | | | | 1 | 0 | 5 | 1 |
8 | | 3 | 21 | 4 | 4 | | | | 1 | 6 | 0 | 0 |
9 | | 2 | 3 | 1 | 26 | | | | 0 | 0 | 0 | 7 |
10 | | 2 | 20 | 3 | 7 | | | | 0 | 5 | 0 | 2 |
TTGGCTTCGTTA
TAACGAAGCCAA
2 redundant motifs found:
ATTGGCTTCGTT - TTGGCTTCGT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTGACTTCATCA. 54 (91.81)
1 + .TTGGCTCAATTT. 147 (90.28)
1 - [TTGTGTTGATTA] 113 (86.64)
2 + [CTGATTTCTTTA] 13 (86.46)
2 + [GTGGCATTGTTA] 135 (85.42)
2 + .TTGGCTTCGTTA. 147 (100.00)
2 - [TTTACTGCTTTA] 68 (89.99)
3 + [TTAGCCCAGTTA] 126 (86.97)
3 + [TTTACTTTTTTT] 223 (86.07)
4 + .TTAGTTTAGTTA. 147 (91.27)
5 + [TTTGCATATTTT] 157 (87.30)
5 - .TTGGGCTCGTTA. 145 (91.55)
5 - [TTAACTCTTTTA] 136 (86.07)
5 - .TTAACTTCTTTT. 127 (90.13)
5 - [TTTTTTTCTTTT] 119 (86.45)
5 - [TGGGCTCCGTGA] 48 (89.01)
6 - .TTGGCTTCCTCA. 145 (90.61)
6 - [TTTGAATCATTA] 126 (88.10)
6 - [TGGGCTTCTGTC] 91 (85.03)
6 - .TTGTGTTCTTTA. 18 (91.50)
7 + [TTGGCTCAATTC] 147 (89.67)
7 - [TGTGCGTCTTTA] 198 (86.61)
7 - .TTGACTTCGTCT. 113 (90.21)
8 + [TTGGCAAAATTA] 147 (86.63)
8 - [TGTGTTTCGTTG] 210 (86.39)
8 - [TTGCCATCTTTC] 93 (85.87)
8 - [TTGTTTTAATTT] 44 (86.13)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 1 | 1 | 24 | | | | 0 | 0 | 0 | 9 |
2 | | 1 | 1 | 4 | 20 | | | | 0 | 0 | 0 | 9 |
3 | | 4 | 0 | 17 | 5 | | | | 2 | 0 | 7 | 0 |
4 | | 5 | 1 | 17 | 3 | | | | 3 | 0 | 5 | 1 |
5 | | 2 | 17 | 3 | 4 | | | | 0 | 6 | 2 | 1 |
6 | | 4 | 2 | 1 | 19 | | | | 0 | 1 | 0 | 8 |
7 | | 1 | 5 | 3 | 17 | | | | 0 | 1 | 0 | 8 |
8 | | 5 | 17 | 2 | 2 | | | | 2 | 7 | 0 | 0 |
9 | | 6 | 1 | 12 | 7 | | | | 2 | 1 | 4 | 2 |
10 | | 1 | 0 | 1 | 24 | | | | 0 | 0 | 0 | 9 |
11 | | 0 | 3 | 2 | 21 | | | | 0 | 3 | 0 | 6 |
12 | | 17 | 3 | 2 | 4 | | | | 6 | 0 | 0 | 3 |
ATTGGCTTCG
CGAAGCCAAT
3 redundant motifs found:
TATTGGCTTCGT - ATTGGCTTCGTT - TTGGCTTCGT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [CTTGACTTCA] 53 (89.38)
1 + [ATCGTCTTCT] 74 (89.26)
1 + [AGTGTCTTCT] 133 (89.26)
1 + .ATTGGCTCAA. 146 (91.73)
1 - .ATTGGCTGTT. 258 (90.43)
1 - [CTTGGCTGTG] 180 (86.36)
2 + .ATTTGTTTCT. 110 (90.06)
2 + [AGTGGCATTG] 134 (85.99)
2 + .ATTGGCTTCG. 146 (100.00)
2 - [ATTTACTGCT] 71 (85.20)
3 + [TTTTGCTTTT] 215 (85.08)
3 - [ATTTTCTTTT] 201 (85.34)
4 + [ATTAGTTTAG] 146 (86.26)
4 - .ATTGGATTAC. 31 (90.30)
5 + [ATTTGCATAT] 156 (85.61)
5 - .ATTGGGCTCG. 148 (90.18)
5 - [ATTGGGCTCC] 52 (88.34)
5 - [TTGGGCTCCG] 51 (86.63)
5 - [AATGCCTTCA] 2 (86.76)
6 - [ATTGCTTTTC] 161 (85.85)
6 - .ATTGGCTTCC. 148 (98.16)
6 - [TTGGGCTTCT] 94 (88.99)
7 + .ATTGGCTCAA. 146 (91.73)
7 - [ATTGAATTCC] 240 (89.65)
7 - .ATTGACTTCG. 116 (96.20)
8 - [ATTGCCATCT] 96 (89.26)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 18 | 2 | 1 | 2 | | | | 9 | 0 | 0 | 0 |
2 | | 1 | 1 | 2 | 19 | | | | 0 | 0 | 0 | 9 |
3 | | 0 | 2 | 2 | 19 | | | | 0 | 0 | 0 | 9 |
4 | | 1 | 0 | 20 | 2 | | | | 0 | 0 | 8 | 1 |
5 | | 3 | 2 | 16 | 2 | | | | 1 | 0 | 8 | 0 |
6 | | 2 | 16 | 2 | 3 | | | | 1 | 6 | 1 | 1 |
7 | | 2 | 2 | 0 | 19 | | | | 0 | 1 | 0 | 8 |
8 | | 0 | 4 | 2 | 17 | | | | 0 | 2 | 1 | 6 |
9 | | 4 | 16 | 0 | 3 | | | | 3 | 5 | 0 | 1 |
10 | | 4 | 4 | 9 | 6 | | | | 2 | 2 | 3 | 2 |
GACGAAGTCAAT
ATTGACTTCGTC
3 redundant motifs found:
AACGAGCCCAAT - GAGGAAGCCAAT - ACGAAGTCAA -
Best occurrences (match percentage):
Seq St oligo pos match
1 - [GATGATCACAAA] 156 (85.44)
1 - [GAAGAAGAAGAA] 86 (88.37)
1 - [GAAGAAGAAGAA] 83 (88.37)
1 - [GAAGAAGAAGAA] 80 (88.37)
1 - .GAAGAAGACGAT. 74 (93.20)
1 - [GACGATGATGAT] 68 (86.79)
1 - .GATGAAGTCAAG. 53 (93.15)
2 + .AAAGCAGTAAAT. 69 (90.22)
2 - .AACGAAGCCAAT. 146 (96.05)
2 - [AAAGAAATCAGT] 12 (87.71)
3 + [AAAAAAGAAAAT] 199 (88.16)
3 - [AAAAAAGTAAAA] 222 (87.85)
3 - [CACCAACTAAAT] 138 (85.75)
4 + [AACAAGGAAAAT] 264 (85.46)
5 + [AAAAAAGAAAAA] 117 (85.67)
5 + .AAAGAAGTTAAA. 128 (92.90)
5 + [AACGAGCCCAAT] 146 (89.94)
5 + [GGAGAAGAAGAT] 185 (86.61)
5 + .GAAGAAGATAAA. 188 (91.93)
5 - [GACGAGCTAATT] 31 (86.06)
6 + .AAAGAACACAAA. 19 (90.72)
6 + .GAGGAAGCCAAT. 146 (94.26)
7 + .GACGAAGTCAAT. 114 (100.00)
7 + [CGGGAATTCAAT] 238 (86.48)
7 - [GATGAGGTAAAG] 91 (87.62)
8 + [AAAGATGGCAAT] 94 (89.37)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 6 | 2 | 11 | 1 | | | | 4 | 0 | 5 | 0 |
2 | | 17 | 1 | 2 | 0 | | | | 9 | 0 | 0 | 0 |
3 | | 7 | 9 | 2 | 2 | | | | 5 | 2 | 1 | 1 |
4 | | 1 | 1 | 17 | 1 | | | | 0 | 0 | 9 | 0 |
5 | | 18 | 1 | 1 | 0 | | | | 8 | 1 | 0 | 0 |
6 | | 15 | 0 | 3 | 2 | | | | 9 | 0 | 0 | 0 |
7 | | 1 | 3 | 13 | 3 | | | | 0 | 1 | 8 | 0 |
8 | | 4 | 3 | 1 | 12 | | | | 3 | 2 | 0 | 4 |
9 | | 4 | 13 | 0 | 3 | | | | 1 | 6 | 0 | 2 |
10 | | 16 | 1 | 2 | 1 | | | | 8 | 0 | 1 | 0 |
11 | | 16 | 2 | 1 | 1 | | | | 9 | 0 | 0 | 0 |
12 | | 4 | 0 | 2 | 14 | | | | 3 | 0 | 1 | 5 |
ATTGGCTC
GAGCCAAT
4 redundant motifs found:
AATTGGCTCA - AAATTGGCTC - AATTGGCT - ATTGGC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTTGTCTC. 42 (92.45)
1 + [AGTGTCTT] 133 (85.40)
1 + .ATTGGCTC. 146 (100.00)
1 - .ATTGGCTG. 260 (94.46)
1 - [CTTGGCTG] 182 (86.91)
1 - [ATGCTCTC] 12 (85.27)
2 + .ATTGGCTT. 146 (96.31)
2 - .ATTTTCTC. 275 (91.53)
2 - [AATGACTC] 229 (88.50)
2 - [TTTTTCTC] 220 (86.91)
2 - .GTTGTCTC. 45 (91.37)
3 + [ATTAGCCC] 125 (87.43)
3 + [TTTTGCTT] 215 (86.14)
3 - [ATTTTCTT] 203 (87.84)
4 + .AATGTCTC. 273 (90.94)
4 - [GTTTGCTC] 205 (88.76)
4 - [ATTGGATT] 33 (88.19)
5 + .ATTAGCTC. 32 (95.54)
5 - [TTTAACTC] 233 (85.55)
5 - [TTGGGCTC] 149 (89.11)
5 - [TTGGGCTC] 53 (89.11)
6 - [TTTGTCTA] 191 (85.06)
6 - .ATTGGCTT. 150 (96.31)
6 - [TTGGGCTT] 96 (85.42)
7 + .ATTAGCTC. 124 (95.54)
7 + .ATTGGCTC. 146 (100.00)
7 - .ATTGACTT. 118 (90.94)
8 + [ATTCCCTC] 116 (87.24)
8 - [AATATCTC] 190 (86.48)
8 - .ATTCTCTC. 167 (91.53)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 17 | 1 | 2 | 3 | | | | 11 | 0 | 1 | 1 |
2 | | 2 | 0 | 1 | 20 | | | | 1 | 0 | 0 | 12 |
3 | | 0 | 0 | 2 | 21 | | | | 0 | 0 | 0 | 13 |
4 | | 3 | 2 | 16 | 2 | | | | 2 | 1 | 9 | 1 |
5 | | 2 | 1 | 15 | 5 | | | | 1 | 0 | 7 | 5 |
6 | | 1 | 21 | 0 | 1 | | | | 0 | 13 | 0 | 0 |
7 | | 1 | 1 | 0 | 21 | | | | 0 | 0 | 0 | 13 |
8 | | 1 | 16 | 2 | 4 | | | | 0 | 9 | 1 | 3 |
TATTGGCTTCGT
ACGAAGCCAATA
3 redundant motifs found:
ATTGGCTTCGTT - ATTGGCTTCG - TTGGCTTCGT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .TCTTGACTTCAT. 52 (92.62)
1 + [CATCGTCTTCTT] 73 (88.16)
1 + .AATTGGCTCAAT. 145 (92.41)
1 + [ATTTGTGATCAT] 155 (86.55)
1 - [TGCTGCCTTCTT] 187 (86.47)
1 - [TCTTGGCTGTGT] 179 (87.93)
2 + [AAGTGGCATTGT] 133 (88.99)
2 + .TATTGGCTTCGT. 145 (100.00)
2 - [ATTTGCAATTGT] 28 (85.43)
3 + .TATCGTATTCAT. 54 (90.79)
3 + [TTTTTACTTTTT] 221 (88.25)
3 + [AATGTTCATCGT] 279 (85.32)
3 - .TATTTTCTTTTT. 200 (91.08)
4 + [AATCTCCTCCGT] 125 (85.54)
4 + [AATTAGTTTAGT] 145 (86.44)
4 + [TAGTGCATTTGT] 157 (87.77)
4 - [ATTTGTCATTTT] 59 (87.80)
4 - [TTTTGCAATATT] 51 (85.62)
4 - [AATTGGATTACA] 30 (86.55)
5 + [AATTTGCATATT] 155 (89.03)
5 - .TATCGGATTTCT. 301 (90.21)
5 - [TTTGAGCTTTTT] 270 (85.55)
5 - [ATTTATCTTCTT] 189 (88.71)
5 - .AATTGGGCTCGT. 147 (91.32)
5 - [TTTTAACTTCTT] 129 (89.79)
5 - [TTTTTTCTTTTT] 118 (88.25)
5 - [TATTGGGCTCCG] 51 (86.37)
5 - [ATTGGGCTCCGT] 50 (88.64)
6 - .AATTGGCTTCCT. 147 (97.39)
6 - .TATTTGAATCAT. 128 (90.25)
6 - [ATTTGAATCATT] 127 (85.08)
6 - [TTTGGGCTTCTG] 93 (87.76)
6 - [TTTTGCATTTTT] 54 (89.07)
6 - .TTTTGTGTTCTT. 20 (90.95)
7 + .AATTGGCTCAAT. 145 (92.41)
7 - [TATTGAATTCCC] 239 (87.87)
7 - .AATTGACTTCGT. 115 (96.43)
8 + [AAGTTGCTTTTT] 54 (87.89)
8 + [TATTGGCAAAAT] 145 (87.85)
8 - .AATTGCCATCTT. 95 (92.39)
8 - [ATTTAGCATATT] 30 (85.44)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 9 | 1 | 0 | 16 | | | | 6 | 0 | 0 | 7 |
2 | | 18 | 2 | 2 | 4 | | | | 11 | 1 | 0 | 1 |
3 | | 0 | 1 | 2 | 23 | | | | 0 | 0 | 0 | 13 |
4 | | 0 | 3 | 2 | 21 | | | | 0 | 2 | 0 | 11 |
5 | | 2 | 0 | 21 | 3 | | | | 0 | 0 | 11 | 2 |
6 | | 4 | 3 | 15 | 4 | | | | 2 | 1 | 7 | 3 |
7 | | 5 | 17 | 3 | 1 | | | | 3 | 8 | 2 | 0 |
8 | | 4 | 2 | 0 | 20 | | | | 2 | 1 | 0 | 10 |
9 | | 1 | 4 | 1 | 20 | | | | 0 | 2 | 0 | 11 |
10 | | 4 | 17 | 0 | 5 | | | | 2 | 9 | 0 | 2 |
11 | | 6 | 4 | 9 | 7 | | | | 5 | 2 | 3 | 3 |
12 | | 1 | 1 | 2 | 22 | | | | 0 | 0 | 0 | 13 |