Your Weeder Web Results
NEW: Starting a large job on file /tmp/motif_master/92_WEEDER/aiy_400.fa
Organism code: CE
Processing both strands
/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/92_WEEDER/aiy_400.fa CE large S
Searching for motifs of length 6 with 1 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/92_WEEDER/aiy_400.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) GGCTCA 1.53
2) AAAAAT 1.40
3) TTGGCT 1.38
4) AGCCCA 1.28
5) GCTCAA 1.17
6) CTCACG 1.11
7) AAAGCA 1.10
8) ATTGGC 1.07
9) CCCGCT 1.05
10) CCGTGA 1.03
Elapsed time : 0 min. 0 sec.
Searching for motifs of length 8 with 2 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/92_WEEDER/aiy_400.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) GGCTCAAT 2.42
2) ACGTCAGG 1.81
3) AATTGGCT 1.79
4) TATTCATA 1.70
5) ATTGGCTC 1.68
6) CGGCTCAA 1.65
7) GGCTTCGT 1.62
8) CCTGCTCA 1.60
9) ATTGGCTT 1.58
10) CGAGGTCA 1.57
Elapsed time : 0 min. 5 sec.
Searching for motifs of length 10 with 3 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/92_WEEDER/aiy_400.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) TTGGCTTCGT 2.36
2) GCATTGAGCC 2.31
3) ACACGTCACG 2.20
4) AAATTGGCTC 2.11
5) GCCGTAGAAT 2.10
6) GAAGGCATTG 2.09
7) CCTGACATCG 2.04
8) CACGTCATGG 2.03
9) ATTGGCTTCG 1.99
10) ACGAAGTCAA 1.97
Elapsed time : 1 min. 55 sec.
Searching for motifs of length 12 with 4 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/92_WEEDER/aiy_400.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) ATTGGCTTCGTT 3.60
2) CCGATGTGAGAC 3.52
3) TATGAATAGGAG 3.50
4) GAGGAAGCCAAT 3.45
5) GACGAAGTCAAT 3.41
6) TATTGGCTTCGT 3.37
7) GAAGGCATTGAG 3.33
8) TTGGCTTCGTTA 3.30
9) TGGCTTCGTTAA 3.28
10) ATATGAATAGGA 3.27
Elapsed time : 16 min. 18 sec.
Your sequences:
Sequence 1 : >III:5795739..5796138
Sequence 2 : >X:11767378..11767777
Sequence 3 : >III:7833525..7833924
Sequence 4 : >II:10912663..10913062
Sequence 5 : >I:14142052..14142451
Sequence 6 : >X:7118434..7118833
Sequence 7 : >IV:3625632..3626031
Sequence 8 : >X:15292838..15293237
**** MY ADVICE ****
*** Interesting motifs (highest-ranking) seem to be :
GGCTCA
TGAGCC
4 redundant motifs found:
CGGCTCAA - GGCTCAAT - CTCACG - GCTCAA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [TACTCA] 16 (85.69)
1 + [TTCTCA] 189 (88.66)
1 + .GGCTCA. 199 (100.00)
1 + [TGATCA] 210 (87.56)
1 + .GGCGCA. 221 (93.07)
1 + [TACTCA] 290 (85.69)
1 - [GTCACA] 360 (85.47)
1 - [TGCACA] 327 (85.58)
1 - [TACTCA] 299 (85.69)
1 - [TGATCA] 210 (87.56)
2 + [GTCGCA] 8 (87.35)
2 + [TTCTCA] 166 (88.66)
2 + [TTCTCA] 253 (88.66)
2 + .TGCTCA. 345 (94.38)
2 + .GGCTCA. 363 (100.00)
2 - .GACTCA. 278 (91.31)
2 - [AGATCA] 105 (86.47)
2 - [TGCACA] 89 (85.58)
2 - [GTGTCA] 18 (85.58)
3 + .GGATCA. 47 (93.18)
3 + [TGTTCA] 331 (85.69)
3 - .GGCTAA. 176 (93.07)
3 - [GGCGAA] 77 (86.14)
3 - .GGGTCA. 68 (91.31)
3 - [GTCTAA] 37 (87.35)
3 - .GGCTCA. 17 (100.00)
4 + .TGCTCA. 66 (94.38)
4 + .GGCGCA. 246 (93.07)
4 + [GGAGCA] 254 (86.25)
4 + [GTCTCC] 326 (85.58)
4 + [GGATAA] 373 (86.25)
4 - [TGCTCC] 254 (85.69)
4 - .GTCTCA. 238 (94.27)
4 - [TTCTCA] 227 (88.66)
4 - [GTCTGA] 60 (85.47)
4 - .GGCTGA. 48 (91.20)
5 + [AGCTCG] 85 (87.56)
5 + .GGCTCA. 95 (100.00)
5 + [GGAGCA] 119 (86.25)
5 + [GGCGAA] 226 (86.14)
5 + .AGCTCA. 324 (93.29)
5 + [TGCTGA] 334 (85.58)
5 - [TTCTCA] 337 (88.66)
5 - .GGCTCG. 198 (94.27)
5 - [TGCACA] 156 (85.58)
5 - [TGCTCC] 119 (85.69)
5 - .GGCTCC. 102 (91.31)
5 - [AGCTAA] 83 (86.36)
5 - [GACTCG] 73 (85.58)
5 - .GGCTCA. 61 (100.00)
5 - .GGATCA. 40 (93.18)
5 - .GGCTAA. 4 (93.07)
6 + [GTTTCA] 157 (85.58)
6 + [TGGTCA] 332 (85.69)
6 - [TACTCA] 258 (85.69)
6 - [GTCTAA] 240 (87.35)
6 - [TGCTCG] 226 (88.66)
7 + .GGCACA. 48 (91.20)
7 + [ATCTCA] 55 (87.56)
7 + .TGCTCA. 68 (94.38)
7 + .AGCTCA. 76 (93.29)
7 + .GGCTCA. 199 (100.00)
7 + [TTCTCA] 347 (88.66)
7 + .GGCTCG. 371 (94.27)
7 - .GTCTCA. 387 (94.27)
7 - [AGCTCG] 375 (87.56)
7 - [ATCTCA] 319 (87.56)
7 - .GGCTCG. 208 (94.27)
7 - [AGCTAA] 175 (86.36)
7 - [GTCTCC] 161 (85.58)
7 - [AGCTCG] 137 (87.56)
8 + [AGATCA] 35 (86.47)
8 + [TGCTAA] 84 (87.46)
8 + [TACTCA] 364 (85.69)
8 - .GGTTCA. 345 (91.31)
8 - [ATCTCA] 239 (87.56)
8 - .GTCTCA. 49 (94.27)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 2 | 0 | 24 | 3 | | | | 2 | 0 | 24 | 3 |
2 | | 1 | 0 | 25 | 3 | | | | 1 | 0 | 25 | 3 |
3 | | 2 | 25 | 1 | 1 | | | | 2 | 25 | 1 | 1 |
4 | | 1 | 0 | 2 | 26 | | | | 1 | 0 | 2 | 26 |
5 | | 2 | 26 | 1 | 0 | | | | 2 | 26 | 1 | 0 |
6 | | 25 | 1 | 3 | 0 | | | | 25 | 1 | 3 | 0 |
GGCTCAAT
ATTGAGCC
4 redundant motifs found:
GCATTGAGCC - CGGCTCAA - GCTCAA - GGCTCA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [TACTCAAT] 16 (86.37)
1 + .GGCTCAAT. 199 (100.00)
2 + [TGCTCACT] 345 (86.86)
2 + .GGCTCAAT. 363 (100.00)
2 - [GACTCATT] 276 (85.58)
3 + [TGCTTAAT] 364 (85.15)
3 - [GGCTAATT] 174 (87.65)
3 - .GGCTCAGT. 15 (90.67)
4 + .TGCTCAAA. 66 (91.22)
4 - [GTCTCAAA] 236 (86.65)
5 + [AGCCCAAT] 104 (85.03)
5 + [AGCCCAAT] 200 (85.03)
5 + [AGCTCAAA] 324 (89.77)
5 - [GGCTCGTT] 196 (87.41)
5 - [GACTCGAT] 71 (85.08)
5 - .GGCTCAAT. 59 (100.00)
5 - [GGCTAATT] 2 (87.65)
7 + [GGCACAAA] 48 (86.77)
7 + .TGCTCAAA. 68 (91.22)
7 + [AGCTCAAA] 76 (89.77)
7 + .GGCTCAAT. 199 (100.00)
7 - [GTCTCAAA] 385 (86.65)
7 - [GGCTCGAA] 206 (89.94)
8 + [TGCTAAAT] 84 (88.44)
8 - [GGTTCAAA] 343 (86.43)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 4 | 1 | 26 | 6 | | | | 0 | 0 | 5 | 2 |
2 | | 3 | 1 | 31 | 2 | | | | 0 | 0 | 7 | 0 |
3 | | 1 | 33 | 1 | 2 | | | | 0 | 7 | 0 | 0 |
4 | | 2 | 3 | 2 | 30 | | | | 0 | 0 | 0 | 7 |
5 | | 5 | 29 | 1 | 2 | | | | 0 | 7 | 0 | 0 |
6 | | 31 | 1 | 5 | 0 | | | | 7 | 0 | 0 | 0 |
7 | | 27 | 3 | 2 | 5 | | | | 6 | 0 | 1 | 0 |
8 | | 9 | 2 | 2 | 24 | | | | 2 | 0 | 0 | 5 |
TTGGCTTCGT
ACGAAGCCAA
5 redundant motifs found:
TTGGCTTCGTTA - TATTGGCTTCGT - ATTGGCTTCGTT - ATTGGCTTCG - GGCTTCGT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [TTGTCTCTGT] 93 (89.76)
1 + .TTGACTTCAT. 104 (92.95)
1 + [TCGTCTTCTT] 125 (89.22)
1 + .TTGGCTCAAT. 197 (90.33)
1 - [CTGCCTTCTT] 237 (87.18)
1 - .TTGGCTGTGT. 229 (90.03)
2 + .TTGGCTTCGT. 197 (100.00)
2 - .TTGTCTTCGG. 23 (91.99)
3 + .TTTGCTTTTT. 266 (90.50)
3 + [TTTACTTTTT] 273 (86.40)
3 - [TTTTCTTTTT] 250 (87.44)
3 - [GTGGCTCAGT] 15 (86.49)
4 + [TTAGTTTAGT] 197 (87.33)
4 - [TTGTCATTTT] 109 (85.30)
4 - [TTGGCTGACT] 46 (85.21)
5 - [TGTGCTTTTT] 370 (85.01)
5 - [TTTCCTTTTT] 362 (85.67)
5 - .TTATCTTCTT. 239 (90.35)
5 - [TTGGGCTCGT] 197 (86.78)
5 - [TTAACTTCTT] 179 (89.32)
5 - [TTTTTTTCTT] 171 (86.99)
5 - [TTTTCTTTTT] 168 (87.44)
5 - .TGGGCTCCGT. 100 (90.98)
5 - [TTGGCTAATT] 2 (87.54)
6 + .TTTGTTTCTT. 11 (90.05)
6 - [TAGTCTTATT] 263 (86.04)
6 - .TTGGCTTCCT. 197 (94.71)
6 - [TGGGCTTCTG] 143 (88.37)
6 - [TTGTGTTCTT] 70 (89.32)
7 + .TTGGCTCAAT. 197 (90.33)
7 - .TTGACTTCGT. 165 (95.91)
7 - [TTTGCTTTTG] 10 (85.55)
7 - [TTGCTTTTGT] 9 (87.44)
8 + [TTCTCTTCAT] 2 (85.80)
8 - [TTGTTTTTTT] 374 (88.00)
8 - [TGTGTTTCGT] 262 (85.76)
8 - [TTGCCATCTT] 145 (87.18)
8 - [TTGCTTTATT] 133 (86.70)
8 - [TTGTTTTAAT] 96 (86.70)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 2 | 2 | 29 | | | | 0 | 0 | 0 | 12 |
2 | | 2 | 2 | 3 | 26 | | | | 0 | 0 | 1 | 11 |
3 | | 3 | 1 | 25 | 4 | | | | 1 | 0 | 9 | 2 |
4 | | 4 | 3 | 20 | 6 | | | | 2 | 0 | 8 | 2 |
5 | | 1 | 25 | 2 | 5 | | | | 0 | 11 | 0 | 1 |
6 | | 2 | 2 | 0 | 29 | | | | 0 | 0 | 0 | 12 |
7 | | 1 | 6 | 2 | 24 | | | | 0 | 3 | 1 | 8 |
8 | | 6 | 21 | 1 | 5 | | | | 2 | 8 | 0 | 2 |
9 | | 5 | 2 | 16 | 10 | | | | 3 | 1 | 5 | 3 |
10 | | 1 | 0 | 4 | 28 | | | | 0 | 0 | 1 | 11 |
ATTGGCTTCGTT
AACGAAGCCAAT
5 redundant motifs found:
TGGCTTCGTTAA - TTGGCTTCGTTA - TATTGGCTTCGT - ATTGGCTTCG - TTGGCTTCGT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .ATTGGCTCAATT. 196 (91.30)
1 - [ACTGACCTCGTT] 33 (85.22)
2 + [AGTGGCATTGTT] 184 (86.25)
2 + .ATTGGCTTCGTT. 196 (100.00)
2 - [ATTTACTGCTTT] 119 (88.69)
2 - .ATTGTCTTCGGT. 22 (91.23)
3 + [TTTTACTTTTTT] 272 (86.68)
3 + [ATGTTCATCGTT] 330 (86.65)
3 - .ATTTTCTTTTTT. 249 (90.55)
4 + [ATTAGTTTAGTT] 196 (88.58)
4 - [ATTTTCCTTGTT] 314 (87.31)
5 + .ATTTGCATATTT. 206 (90.60)
5 - .ATGTGCTTTTTT. 369 (90.02)
5 - .ATTGGGCTCGTT. 196 (90.19)
5 - [TTTAACTTCTTT] 178 (87.12)
5 - [TTTTTCTTTTTT] 167 (86.68)
6 - .ATTGGCTTCCTC. 196 (90.96)
6 - [ATTTGAATCATT] 177 (86.30)
6 - [TTGGGCTTCTGT] 142 (85.83)
6 - [TTTTGCATTTTT] 104 (86.40)
6 - [TTTGTGTTCTTT] 69 (86.05)
7 + .ATTGGCTCAATT. 196 (91.30)
7 - .ATTGACTTCGTC. 164 (91.85)
8 - [TTGTGTTTCGTT] 261 (85.75)
8 - .ATTGCCATCTTT. 144 (90.00)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 29 | 2 | 3 | 6 | | | | 11 | 0 | 0 | 0 |
2 | | 1 | 2 | 2 | 35 | | | | 0 | 0 | 0 | 11 |
3 | | 1 | 2 | 6 | 31 | | | | 0 | 0 | 1 | 10 |
4 | | 4 | 0 | 25 | 11 | | | | 0 | 0 | 8 | 3 |
5 | | 6 | 3 | 25 | 6 | | | | 1 | 1 | 7 | 2 |
6 | | 3 | 29 | 3 | 5 | | | | 0 | 10 | 1 | 0 |
7 | | 6 | 5 | 1 | 28 | | | | 2 | 1 | 0 | 8 |
8 | | 2 | 6 | 4 | 28 | | | | 0 | 2 | 0 | 9 |
9 | | 8 | 23 | 2 | 7 | | | | 3 | 6 | 0 | 2 |
10 | | 7 | 3 | 18 | 12 | | | | 2 | 1 | 4 | 4 |
11 | | 1 | 1 | 4 | 34 | | | | 0 | 0 | 1 | 10 |
12 | | 0 | 5 | 2 | 33 | | | | 0 | 2 | 0 | 9 |
*** Interesting motifs (not highest-ranking) can also be :
TTGGCT
AGCCAA
4 redundant motifs found:
ATTGGCTT - ATTGGCTC - AATTGGCT - ATTGGC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTGCCT. 5 (93.08)
1 + [TTGTAT] 83 (86.10)
1 + .TTGTCT. 93 (95.59)
1 + .TTGACT. 104 (93.08)
1 + [TCGTCT] 125 (86.46)
1 + .TTGCCT. 158 (93.08)
1 + [TGGGCA] 178 (87.69)
1 + [GTGTCT] 184 (86.01)
1 + .TTGGCT. 197 (100.00)
1 - [GTGTCT] 366 (86.01)
1 - .TTGGCT. 311 (100.00)
1 - [TCTGCT] 245 (85.54)
1 - .TTGGCT. 233 (100.00)
1 - [TTGTGT] 169 (86.10)
1 - [TCGTCT] 58 (86.46)
2 + [TTGACA] 17 (85.49)
2 + .TTGGCT. 197 (100.00)
2 - .TTTTCT. 326 (90.26)
2 - .TTTTCT. 271 (90.26)
2 - .TTTTCT. 209 (90.26)
2 - [TTTACT] 124 (87.75)
2 - [TTAACT] 115 (85.85)
2 - .TTGTCT. 96 (95.59)
2 - [TTTGCA] 83 (87.08)
2 - .TTGTCT. 27 (95.59)
3 + .TTTTCT. 134 (90.26)
3 + .TTGGGT. 213 (90.51)
3 + .TTTGCT. 266 (94.67)
3 + [TTTACT] 273 (87.75)
3 + [TTTGCA] 296 (87.08)
3 + .TTTTCT. 359 (90.26)
3 + [TCTGCT] 362 (85.54)
3 - .TTTTCT. 394 (90.26)
3 - [TTTGAT] 382 (85.18)
3 - [TTTCCT] 301 (87.75)
3 - .TTTTCT. 254 (90.26)
3 - [TTAACT] 183 (85.85)
3 - .TGGGCT. 178 (95.28)
3 - .TTGTCT. 39 (95.59)
3 - .GTGGCT. 19 (90.42)
4 + [TTTGAT] 91 (85.18)
4 + [TTTCCT] 151 (87.75)
4 + [TTTGCA] 218 (87.08)
4 + [TTTGGT] 334 (85.18)
4 - [TTTCCT] 318 (87.75)
4 - [TGTTCT] 312 (85.54)
4 - [TGGGAT] 303 (85.79)
4 - .TTTGCT. 256 (94.67)
4 - [TTGTCA] 113 (88.00)
4 - [TTTGCA] 106 (87.08)
4 - .TTGGAT. 84 (90.51)
4 - .TTGGCT. 50 (100.00)
4 - .TTTTCT. 37 (90.26)
4 - [TTTGAT] 5 (85.18)
5 + .TTAGCT. 83 (92.77)
5 + [TGTGCT] 137 (89.95)
5 + [TTTGCA] 207 (87.08)
5 - [TGTGCT] 374 (89.95)
5 - [TTTCCT] 366 (87.75)
5 - [TGAGCT] 324 (88.05)
5 - .TTTGCT. 317 (94.67)
5 - [TTTCCT] 306 (87.75)
5 - .TTTTCT. 297 (90.26)
5 - [TTAACT] 284 (85.85)
5 - [TTATCT] 243 (88.36)
5 - .TGGGCT. 200 (95.28)
5 - [TTAACT] 192 (85.85)
5 - [TTAACT] 183 (85.85)
5 - .TTTTCT. 172 (90.26)
5 - [TTTGCA] 158 (87.08)
5 - [TTTACT] 148 (87.75)
5 - .TGGGCT. 104 (95.28)
5 - .TTGGCT. 6 (100.00)
6 - [TTATCT] 361 (88.36)
6 - .TTGTCT. 242 (95.59)
6 - [TGTGCT] 228 (89.95)
6 - .TTGGCT. 201 (100.00)
6 - .TGGGCT. 147 (95.28)
6 - [TTTGCA] 109 (87.08)
6 - .TTTTCT. 102 (90.26)
6 - [TCTGCT] 83 (85.54)
6 - [TTGTGT] 74 (86.10)
6 - [TGTTCT] 71 (85.54)
7 + .TTGGCA. 46 (92.41)
7 + [TTACCT] 143 (85.85)
7 + .TTAGCT. 175 (92.77)
7 + .TTGGCT. 197 (100.00)
7 + .TGGGCT. 369 (95.28)
7 - .TTTTCT. 393 (90.26)
7 - [TTTGCA] 270 (87.08)
7 - .TTTTCT. 235 (90.26)
7 - .TTGACT. 169 (93.08)
7 - [TCGTCT] 163 (86.46)
7 - [TGAGCT] 76 (88.05)
7 - [TTTCCT] 38 (87.75)
7 - .TTTGCT. 14 (94.67)
8 + [GTTGCT] 106 (85.09)
8 + [TTTACT] 113 (87.75)
8 + .TTGGCA. 197 (92.41)
8 - [TTTGCA] 392 (87.08)
8 - .TTTTCT. 358 (90.26)
8 - [TTGTGT] 267 (86.10)
8 - [TTGTAT] 257 (86.10)
8 - [TTGCCA] 198 (85.49)
8 - [TTGCCA] 149 (85.49)
8 - [TTAGCA] 84 (85.18)
8 - [GTGTCT] 51 (86.01)
8 - .TCGGCT. 41 (90.87)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 0 | 1 | 33 | | | | 0 | 0 | 1 | 47 |
2 | | 0 | 1 | 5 | 28 | | | | 0 | 1 | 5 | 42 |
3 | | 2 | 0 | 28 | 4 | | | | 2 | 0 | 28 | 18 |
4 | | 2 | 2 | 25 | 5 | | | | 2 | 2 | 25 | 19 |
5 | | 1 | 32 | 1 | 0 | | | | 1 | 46 | 1 | 0 |
6 | | 2 | 0 | 0 | 32 | | | | 2 | 0 | 0 | 46 |
AATTGGCT
AGCCAATT
5 redundant motifs found:
AAATTGGCTC - ATTGGCTT - ATTGGCTC - ATTGGC - TTGGCT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATTGGCT. 195 (100.00)
1 - .CATTGGCT. 311 (90.59)
2 + [AATTTGTT] 159 (88.46)
2 + .TATTGGCT. 195 (91.43)
2 + [AATTTGCC] 383 (85.74)
2 - [AAATGACT] 280 (85.17)
2 - .AATTGTCT. 27 (94.05)
3 + [AATTAGAT] 30 (85.41)
3 + [AATTAGCC] 174 (85.74)
3 - [AATTAACT] 183 (87.12)
3 - [ATTTGTCT] 39 (85.48)
4 + [AATTAGTT] 195 (88.46)
4 + [AAATGTCT] 322 (86.25)
4 - .AATTGGAT. 84 (91.26)
5 + [AATTAGCC] 2 (85.74)
5 + .AATTAGCT. 81 (94.15)
5 - [AATTTGTT] 401 (88.46)
6 + [AATTGTTT] 6 (88.36)
6 - [ATTTGTCT] 242 (85.48)
6 - [AAATTGCT] 215 (86.34)
6 - [AATTGCTT] 214 (86.59)
6 - .AATTGGCT. 201 (100.00)
6 - [AATTCGTT] 2 (85.85)
7 + .AATTAGCT. 173 (94.15)
7 + .AATTGGCT. 195 (100.00)
7 - .AATTGACT. 169 (92.97)
7 - [AATTTCCT] 38 (86.44)
8 - [AAATGGTT] 347 (86.50)
8 - [AATTAGTT] 271 (88.46)
8 - [AATTCTCT] 218 (85.60)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 49 | 4 | 0 | 5 | | | | 8 | 1 | 0 | 1 |
2 | | 49 | 2 | 2 | 5 | | | | 10 | 0 | 0 | 0 |
3 | | 6 | 1 | 3 | 48 | | | | 0 | 0 | 0 | 10 |
4 | | 2 | 2 | 4 | 50 | | | | 0 | 0 | 0 | 10 |
5 | | 8 | 4 | 38 | 8 | | | | 2 | 0 | 8 | 0 |
6 | | 6 | 5 | 39 | 8 | | | | 1 | 0 | 8 | 1 |
7 | | 4 | 41 | 4 | 9 | | | | 1 | 9 | 0 | 0 |
8 | | 4 | 5 | 2 | 47 | | | | 0 | 0 | 0 | 10 |
GCTCAA
TTGAGC
3 redundant motifs found:
CGGCTCAA - GGCTCAAT - GGCTCA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .ACTCAA. 17 (94.57)
1 + [TTTCAA] 24 (88.60)
1 + [ATTCAA] 29 (88.07)
1 + [AATCAA] 164 (87.23)
1 + [ACACAA] 169 (86.05)
1 + .TCTCAA. 190 (95.11)
1 + .GCTCAA. 200 (100.00)
1 + [GCGCAA] 222 (89.45)
1 + [ACTCAC] 291 (85.75)
1 - [GCCCGA] 401 (85.93)
1 - .ACTCAA. 298 (94.57)
1 - [TCACAA] 207 (86.58)
2 + .TCTCAA. 167 (95.11)
2 + .TCTCAA. 254 (95.11)
2 + .GCTCAC. 346 (91.17)
2 + .ACTCAA. 350 (94.57)
2 + .GCTCAA. 364 (100.00)
2 - [TCTCGA] 268 (87.54)
2 - [TTTCAA] 176 (88.60)
2 - [TTTCAA] 133 (88.60)
3 + [GCCCGA] 7 (85.93)
3 + .GATCAA. 48 (92.66)
3 + .GCTAAA. 163 (91.17)
3 + .GTTCAA. 232 (93.50)
3 + [ATTCAA] 345 (88.07)
3 + [GCTTAA] 365 (89.15)
3 + .GATCAA. 381 (92.66)
3 - [ACCCAA] 213 (88.07)
3 - [TCTAAA] 203 (86.28)
3 - [ACTAAA] 189 (85.75)
3 - [ATTCAA] 171 (88.07)
3 - [GCTCAG] 16 (89.15)
4 + [AATCAA] 4 (87.23)
4 + [AATCAA] 41 (87.23)
4 + .GCTCAA. 67 (100.00)
4 + [ATTCAA] 287 (88.07)
4 + [TTTCAA] 293 (88.60)
4 - [AATCAA] 266 (87.23)
4 - .TCTCAA. 237 (95.11)
4 - [ACTAAA] 201 (85.75)
4 - [ATTCAA] 172 (88.07)
4 - [TATCAA] 92 (87.76)
5 + [ACTCAC] 24 (85.75)
5 + .GCTCAC. 96 (91.17)
5 + .GCCCAA. 105 (93.50)
5 + .GCCCAA. 201 (93.50)
5 + .GCTCAA. 325 (100.00)
5 - .ACTCAA. 281 (94.57)
5 - [ACTCGA] 72 (87.00)
5 - .GCTCAA. 60 (100.00)
6 + [ACACAA] 74 (86.05)
6 + .GCCCAA. 148 (93.50)
6 + [ATTCAA] 181 (88.07)
6 + .GCACAA. 229 (91.47)
6 - [ACTCAC] 390 (85.75)
6 - [TTTCAA] 347 (88.60)
6 - [TTTCAA] 209 (88.60)
6 - [CCTCAA] 194 (89.87)
7 + .GCACAA. 49 (91.47)
7 + .TCTCAA. 56 (95.11)
7 + .GCTCAA. 69 (100.00)
7 + .GCTCAA. 77 (100.00)
7 + [GCTCTA] 178 (89.22)
7 + .GCTCAA. 200 (100.00)
7 + [ATTCAA] 282 (88.07)
7 + [ATTCAA] 293 (88.07)
7 + [GATCGA] 322 (85.09)
7 + [TCTCAC] 348 (86.28)
7 + .GCTCGA. 372 (92.43)
7 - .TCTCAA. 386 (95.11)
7 - .GCTCGA. 374 (92.43)
7 - .GCCCAA. 338 (93.50)
7 - .GCTCGA. 207 (92.43)
7 - .GTTCAA. 86 (93.50)
7 - [TTTCAA] 25 (88.60)
8 + .GATCAA. 36 (92.66)
8 + .GCTAAA. 85 (91.17)
8 + [ATTCAA] 90 (88.07)
8 + .GTTCAA. 230 (93.50)
8 + [ACACAA] 267 (86.05)
8 + .ACTCAA. 365 (94.57)
8 - .GTTCAA. 344 (93.50)
8 - [TCTCAC] 48 (86.28)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 5 | 1 | 32 | 6 | | | | 5 | 0 | 28 | 6 |
2 | | 3 | 37 | 0 | 4 | | | | 3 | 32 | 0 | 4 |
3 | | 2 | 4 | 1 | 37 | | | | 2 | 4 | 0 | 33 |
4 | | 2 | 41 | 0 | 1 | | | | 2 | 37 | 0 | 0 |
5 | | 40 | 0 | 3 | 1 | | | | 36 | 0 | 3 | 0 |
6 | | 41 | 2 | 1 | 0 | | | | 37 | 2 | 0 | 0 |
ATTGGCTC
GAGCCAAT
5 redundant motifs found:
AAATTGGCTC - ATTGGCTT - AATTGGCT - ATTGGC - TTGGCT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .ATTGCCTC. 4 (93.31)
1 + .TTTGTCTC. 92 (92.01)
1 + [AGTGTCTT] 183 (87.10)
1 + .ATTGGCTC. 196 (100.00)
1 - .ATTGGCTG. 310 (94.30)
1 - [CTTGGCTG] 232 (87.39)
2 + .ATTGGCTT. 196 (96.16)
2 - .ATTTTCTC. 325 (91.91)
2 - [AATGACTC] 279 (87.98)
2 - [TTTTTCTC] 270 (86.87)
2 - [ATTTTATC] 225 (85.62)
2 - .GTTGTCTC. 95 (92.01)
2 - .ATTGTCTT. 26 (93.20)
3 + [AATGGATC] 44 (88.39)
3 + [AGTGGTTC] 237 (86.52)
3 + [TTTTGCTT] 265 (85.99)
3 - [ATTTTCTA] 401 (85.11)
3 - [ATTTGATC] 381 (88.58)
3 - [ATTTTCTT] 253 (88.07)
3 - [TTTGTCTA] 38 (85.21)
3 - [CGTGGCTC] 18 (86.99)
4 + .AATGTCTC. 323 (91.71)
4 - [GTTTGCTC] 255 (89.83)
4 - [ATTGGATT] 83 (89.88)
4 - [GTTGGCTG] 49 (89.26)
4 - [ATTTTCTT] 36 (88.07)
5 + .ATTAGCTC. 82 (94.09)
5 - [TTGGGCTC] 199 (88.60)
5 - [TTGGGCTC] 103 (88.60)
5 - [GTTGGCTA] 5 (88.17)
6 - [TTTGTCTA] 241 (85.21)
6 - [AATTGCTT] 214 (85.69)
6 - .ATTGGCTT. 200 (96.16)
7 + [TTTGGCAC] 45 (87.42)
7 + .ATTAGCTC. 174 (94.09)
7 + .ATTGGCTC. 196 (100.00)
7 + .ATGGGCTC. 368 (93.63)
7 - [ATTGACTT] 168 (89.47)
7 - [TTTTGCTT] 13 (85.99)
8 + [ATTCCCTC] 166 (86.31)
8 + [ATTGGCAA] 196 (85.66)
8 - .ATTTTCTC. 357 (91.91)
8 - [AATGGTTC] 346 (87.30)
8 - [AATATCTC] 240 (85.80)
8 - .ATTCTCTC. 217 (90.04)
8 - .AGTGTCTC. 50 (90.94)
8 - [ATCGGCTT] 40 (86.84)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 26 | 2 | 4 | 4 | | | | 15 | 0 | 1 | 1 |
2 | | 4 | 0 | 3 | 29 | | | | 1 | 0 | 1 | 15 |
3 | | 0 | 1 | 3 | 32 | | | | 0 | 0 | 1 | 16 |
4 | | 3 | 2 | 27 | 4 | | | | 2 | 1 | 12 | 2 |
5 | | 2 | 2 | 24 | 8 | | | | 0 | 1 | 8 | 8 |
6 | | 3 | 31 | 0 | 2 | | | | 0 | 17 | 0 | 0 |
7 | | 2 | 1 | 0 | 33 | | | | 0 | 0 | 0 | 17 |
8 | | 2 | 25 | 3 | 6 | | | | 0 | 13 | 1 | 3 |
GACGAAGTCAAT
ATTGACTTCGTC
2 redundant motifs found:
GAGGAAGCCAAT - ACGAAGTCAA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AACGAGGTCAGT. 33 (90.11)
1 - [GAAGAAGAAGAA] 136 (86.82)
1 - [GAAGAAGAAGAA] 133 (86.82)
1 - [GAAGAAGAAGAA] 130 (86.82)
1 - .GAAGAAGACGAT. 124 (93.29)
1 - [GACGATGATGAT] 118 (85.28)
1 - .GATGAAGTCAAG. 103 (94.32)
1 - [GGAGGAGGCAAT] 4 (85.66)
2 + .ACCGAAGACAAT. 22 (91.75)
2 + [AAAGCAGTAAAT] 119 (88.08)
2 - .AACGAAGCCAAT. 196 (95.94)
2 - [AAAGAAATCAGT] 62 (88.15)
3 + [AAAAAAGAAAAT] 249 (86.45)
5 + .AAAGAAGTTAAA. 178 (90.86)
5 + [AACGAGCCCAAT] 196 (88.61)
5 + [GGAGAAGAAGAT] 235 (85.98)
5 + .GAAGAAGATAAA. 238 (90.39)
6 + [AAAGAACACAAA] 69 (88.91)
6 + .GAGGAAGCCAAT. 196 (93.63)
7 + .GACGAAGTCAAT. 164 (100.00)
7 - [GATGAGGTAAAG] 141 (87.73)
8 + [GATCAAGCCGAT] 36 (87.21)
8 + [AAAGATGGCAAT] 144 (88.80)
8 - [GATGAAGAGAAG] 1 (87.88)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 8 | 2 | 15 | 1 | | | | 4 | 0 | 5 | 0 |
2 | | 21 | 2 | 3 | 0 | | | | 8 | 1 | 0 | 0 |
3 | | 8 | 11 | 2 | 5 | | | | 3 | 4 | 1 | 1 |
4 | | 1 | 3 | 21 | 1 | | | | 0 | 0 | 9 | 0 |
5 | | 23 | 1 | 2 | 0 | | | | 9 | 0 | 0 | 0 |
6 | | 20 | 0 | 4 | 2 | | | | 8 | 0 | 1 | 0 |
7 | | 2 | 3 | 18 | 3 | | | | 0 | 0 | 9 | 0 |
8 | | 6 | 4 | 2 | 14 | | | | 3 | 2 | 0 | 4 |
9 | | 4 | 17 | 2 | 3 | | | | 0 | 7 | 0 | 2 |
10 | | 21 | 1 | 3 | 1 | | | | 8 | 0 | 1 | 0 |
11 | | 21 | 2 | 2 | 1 | | | | 8 | 0 | 1 | 0 |
12 | | 4 | 0 | 3 | 19 | | | | 2 | 0 | 1 | 6 |