Your Weeder Web Results

NEW: Starting a large job on file /tmp/motif_master/82_WEEDER/aiy_300.fa

Organism code: CE

Processing both strands

/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/82_WEEDER/aiy_300.fa CE large S


Searching for motifs of length 6 with 1 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/82_WEEDER/aiy_300.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) CTGCTC 1.43
2) CCCGCT 1.37
3) ATTGGC 1.31
4) AAAAAT 1.31
5) AGCCCA 1.25
6) GGGTAA 1.19
7) ACTGGG 1.13
8) ATGAGG 1.12
9) GACTTC 1.11
10) TACCCC 1.10

Elapsed time : 0 min. 0 sec.


Searching for motifs of length 8 with 2 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/82_WEEDER/aiy_300.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) AATTGGCT 1.91
2) GGCTTCGT 1.82
3) AATTAGCT 1.72
4) ATTGGCTC 1.71
5) AACTGGGC 1.71
6) GGCTCAAT 1.68
7) GTCATGAC 1.63
8) TACCCCGC 1.61
9) ACGAAGTC 1.61
10) GATTAATC 1.61

Elapsed time : 0 min. 3 sec.


Searching for motifs of length 10 with 3 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/82_WEEDER/aiy_300.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) TTGGCTTCGT 2.39
2) AAATTGGCTC 2.34
3) ATTGGCTTCG 2.29
4) GAAGGCATTG 2.17
5) ACGAAGTCAA 2.16
6) AATTGGCTCA 2.10
7) CTACCCCGCT 2.04
8) TACCCCGCTA 2.03
9) GCATTGAGCC 2.03
10) GCTTTTTACT 2.01

Elapsed time : 1 min. 25 sec.


Searching for motifs of length 12 with 4 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/82_WEEDER/aiy_300.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) ATTGGCTTCGTT 3.77
2) TTGGCTTCGTTA 3.59
3) GAGGAAGCCAAT 3.57
4) GACGAAGTCAAT 3.55
5) TATTGGCTTCGT 3.45
6) TGAGGAAGCCAA 3.38
7) GAAGGCATTGAG 3.34
8) GTGAAGGCATTG 3.34
9) AACGAGCCCAAT 3.25
10) ATTGGCTCAATT 3.24

Elapsed time : 11 min. 56 sec.


Your sequences:

Sequence 1 : >III:5795789..5796088
Sequence 2 : >X:11767428..11767727
Sequence 3 : >III:7833575..7833874
Sequence 4 : >II:10912713..10913012
Sequence 5 : >I:14142102..14142401
Sequence 6 : >X:7118484..7118783
Sequence 7 : >IV:3625682..3625981
Sequence 8 : >X:15292888..15293187


**** MY ADVICE ****


*** Interesting motifs (highest-ranking) seem to be :


AATTGGCT
AGCCAATT

5 redundant motifs found:
AATTGGCTCA - AAATTGGCTC - ATTGGCTC - AATTAGCT - ATTGGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATTGGCT. 145 (100.00)
1 - [CATTGGCT] 261 (88.12)
2 + [AATTTGTT] 109 (88.45)
2 + [AAGTGGCA] 133 (85.27)
2 + .TATTGGCT. 145 (91.74)
2 + [AAATCGCT] 279 (85.83)
2 - [AAATGACT] 230 (87.39)
2 - [AATTGTCG] 26 (85.21)
3 + [AATTAGCC] 124 (87.27)
3 + [ATTTGGGT] 161 (85.18)
3 + [AAGTGGTT] 186 (86.11)
3 - [AATTAACT] 133 (89.39)
4 + [AATTAGTT] 145 (89.05)
4 + [AAATGTCT] 272 (87.39)
4 - [AATTGAAT] 237 (85.32)
4 - .AATTGGAT. 34 (90.98)
5 + .AATTAGCT. 31 (95.05)
5 + [AATTTGCA] 155 (87.61)
6 - [ATTTGTCT] 192 (87.20)
6 - [AAATTGCT] 165 (87.51)
6 - [AATTGCTT] 164 (86.65)
6 - .AATTGGCT. 151 (100.00)
7 + .AATTAGCT. 123 (95.05)
7 + .AATTGGCT. 145 (100.00)
7 - .AATTGACT. 119 (94.33)
8 + [AATATGCT] 30 (85.04)
8 + [AAGTTGCT] 54 (86.57)
8 + [AATTCCCT] 115 (85.43)
8 - [AATTAGTT] 221 (89.05)
8 - [AATTCTCT] 168 (87.11)
8 - [AATTGCCA] 99 (85.81)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 37 1 0 3| 7 0 0 1
2 35 2 0 4| 8 0 0 0
3 4 1 3 33| 0 0 0 8
4 2 1 3 35| 0 0 0 8
5 6 3 27 5| 2 0 6 0
6 5 3 28 5| 1 0 7 0
7 2 31 3 5| 1 7 0 0
8 4 3 2 32| 0 0 0 8






TTGGCTTCGT
ACGAAGCCAA

5 redundant motifs found:
TATTGGCTTCGT - TTGGCTTCGTTA - ATTGGCTTCGTT - ATTGGCTTCG - GGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTGTCTCTGT. 43 (93.64)
1 + .TTGACTTCAT. 54 (95.37)
1 + [TCATCATCGT] 69 (86.13)
1 + .TCGTCTTCTT. 75 (92.55)
1 + [TCTTCTTCTT] 78 (89.65)
1 + [TCTTCTTCTT] 81 (89.65)
1 + [TCTTCTTCTT] 84 (89.65)
1 + [TCTTCTTCTT] 87 (89.65)
1 + [TTTGCCTAAT] 107 (87.11)
1 + [TGGGCAGTGT] 128 (85.88)
1 + .TTGGCTCAAT. 147 (93.10)
1 + [TTGTGATCAT] 157 (88.15)
1 - .CTGCCTTCTT. 187 (91.17)
1 - .TTGGCTGTGT. 179 (92.90)
2 + [CTGATTTCTT] 13 (88.06)
2 + [GTGGCATTGT] 135 (88.60)
2 + .TTGGCTTCGT. 147 (100.00)
2 + [TTGCTATTTT] 191 (86.36)
2 + [TCAACTCTGT] 206 (85.23)
2 - [CTGTTTTTTT] 243 (86.27)
2 - [TGTTTTTTTT] 242 (85.45)
2 - [TTTTTTTCGA] 238 (86.04)
2 - [TGTTTTTTTT] 87 (85.45)
2 - [TTTACTGCTT] 70 (89.36)
3 + [TTATTATCGT] 50 (87.33)
3 + [TTAGCCCAGT] 126 (87.18)
3 + [TTAATTTAGT] 135 (87.95)
3 + .TTTGCTTTTT. 216 (94.42)
3 + [TTGCTTTTTA] 217 (85.06)
3 + .TTTACTTTTT. 223 (91.87)
3 + [TTACTTTTTT] 224 (87.36)
3 + [TTTTTTCCAT] 229 (87.13)
3 + [TTTCCATTTT] 232 (87.26)
3 + [TGTTCATCGT] 281 (88.04)
3 - .TTTTCTTTTT. 200 (92.37)
3 - [TTTCTTTTTT] 199 (87.36)
4 + [TCTCCTCCGT] 127 (86.82)
4 + .TTAGTTTAGT. 147 (90.49)
4 + [TTTAGTTAGT] 151 (87.95)
4 - [TTTTCCTTGT] 265 (87.65)
4 - [TGTTCTTTGT] 258 (89.65)
4 - [TTTGCTCCGA] 202 (89.88)
4 - [GTAGCATTTT] 91 (85.31)
4 - .TTGTCATTTT. 59 (91.37)
5 + .TTTGCATATT. 157 (90.01)
5 + [GTAGCTTTTT] 201 (89.22)
5 - [TTGAGCTTTT] 271 (85.86)
5 - .TGAGCTTTTT. 270 (91.31)
5 - [TTTTCCTCAT] 253 (87.85)
5 - [TTTCCTCATT] 252 (88.65)
5 - [TTTTCTTCAA] 243 (87.77)
5 - .TTATCTTCTT. 189 (94.66)
5 - .TTGGGCTCGT. 147 (91.08)
5 - [TTAACTCTTT] 138 (89.85)
5 - .TTAACTTCTT. 129 (94.17)
5 - .TTTTTTTCTT. 121 (90.85)
5 - [TTTTTTCTTT] 120 (86.54)
5 - .TTTTCTTTTT. 118 (92.37)
5 - [TTTCTTTTTT] 117 (87.36)
5 - [TTTTTTTTTT] 113 (88.56)
5 - [TTTTTTTTTT] 112 (88.56)
5 - [TTTTTTTTTT] 111 (88.56)
5 - [TTTGCACATT] 104 (87.99)
5 - .TGGGCTCCGT. 50 (94.87)
6 - .TTGGCTTCCT. 147 (96.01)
6 - .TGGGCTTCTG. 93 (91.31)
6 - .TTTGCATTTT. 55 (90.51)
6 - [TTTTCTGATT] 48 (87.06)
6 - [TGATTTTCAT] 43 (86.04)
6 - [TCTGCTTTTT] 29 (89.40)
6 - [CTGCTTTTTT] 28 (85.06)
6 - .TTGTGTTCTT. 20 (93.76)
6 - [TGTGTTCTTT] 19 (85.48)
7 + [TTTACCTCAT] 92 (87.36)
7 + .TTGGCTCAAT. 147 (93.10)
7 - [TTTTTTTCTA] 184 (85.66)
7 - .TTGACTTCGT. 115 (97.46)
7 - [TCGTCTCCCT] 109 (86.93)
7 - [TCGATTTTTT] 57 (85.95)
7 - [TTGAGCTTTT] 23 (85.86)
7 - [TGAGCTTTTG] 22 (86.11)
8 + [GTTGCTTTTT] 56 (89.22)
8 + [TTGCTTTTTA] 57 (85.06)
8 + [TTACTTTCAT] 64 (87.95)
8 + [TTTCGTTTAT] 138 (85.66)
8 - [TTAGTTGTGT] 217 (86.18)
8 - .TGTGTTTCGT. 212 (90.18)
8 - [TGTATTCCGT] 202 (85.61)
8 - .TTGCCATCTT. 95 (92.46)
8 - [CTTGCTTTAT] 84 (87.52)
8 - [TTGCTTTATT] 83 (89.76)
8 - [TTGTTTTAAT] 46 (89.26)
8 - .TTAGCATATT. 30 (90.01)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 1 1 20| 0 1 0 28
2 0 1 3 18| 0 1 4 24
3 3 0 16 3| 5 0 16 8
4 3 2 13 4| 4 2 15 8
5 0 18 2 2| 0 24 2 3
6 2 1 0 19| 5 1 0 23
7 0 5 1 16| 0 4 1 24
8 3 15 0 4| 5 15 0 9
9 3 1 10 8| 3 1 8 17
10 1 0 1 20| 0 0 1 28






ATTGGCTTCGTT
AACGAAGCCAAT

5 redundant motifs found:
ATTGGCTCAATT - TATTGGCTTCGT - TTGGCTTCGTTA - ATTGGCTTCG - TTGGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TTTGTCTCTGTC] 42 (86.79)
1 + [CTTGACTTCATC] 53 (88.03)
1 + [ATCGTCTTCTTC] 74 (87.88)
1 + [TTTTGCCTAATC] 106 (85.86)
1 + .ATTGGCTCAATT. 146 (93.39)
1 - [CTTGGCTGTGTG] 178 (85.37)
2 + [ACTGATTTCTTT] 12 (87.90)
2 + .AGTGGCATTGTT. 134 (90.99)
2 + .ATTGGCTTCGTT. 146 (100.00)
2 - [ATGTTTTTTTTT] 86 (87.68)
2 - .ATTTACTGCTTT. 69 (92.14)
3 + [ATTAGCCCAGTT] 125 (89.64)
3 + [ATTTGGGTAATT] 161 (85.82)
3 + [TTTGGGTAATTT] 162 (85.40)
3 + .TTTTACTTTTTT. 222 (90.91)
3 + [TTTTTTTCCATT] 228 (85.99)
3 + [TTTTCCATTTTT] 231 (87.08)
3 + [ATTTTTTGTTTT] 237 (86.99)
3 + .ATGTTCATCGTT. 280 (91.27)
3 - [ATGAACATTTTT] 276 (87.12)
3 - .ATTTTCTTTTTT. 199 (93.66)
3 - [TTTTCTTTTTTT] 198 (86.18)
3 - [AGGGTCATTGTT] 13 (85.68)
4 + .ATTAGTTTAGTT. 146 (92.14)
4 - .ATTTTCCTTGTT. 264 (91.36)
4 - [AGTAGCATTTTT] 90 (87.67)
4 - [TTTGTCATTTTG] 58 (85.43)
5 + .ATTTGCATATTT. 156 (93.89)
5 - [TTTGAGCTTTTT] 270 (85.66)
5 - [CTTTTCCTCATT] 252 (87.18)
5 - [TTTTCCTCATTT] 251 (86.58)
5 - [TTTTTCTTCAAT] 242 (85.73)
5 - [TTTATCTTCTTC] 188 (88.22)
5 - .ATTGGGCTCGTT. 146 (93.51)
5 - .TTTAACTTCTTT. 128 (91.52)
5 - [CTTTTTTTCTTT] 120 (88.26)
5 - [TTTTTTTCTTTT] 119 (85.16)
5 - .TTTTTCTTTTTT. 117 (90.91)
5 - [TTTTCTTTTTTT] 116 (86.18)
5 - [CTTTTTTTTTTT] 112 (86.18)
5 - [TTTTTTTTTTTT] 111 (87.83)
5 - [TTTTGCACATTT] 103 (88.47)
5 - [ATTGGGCTCCGT] 50 (85.24)
5 - [TTGGGCTCCGTG] 49 (87.12)
6 - [ATTTGTCTAATT] 188 (88.84)
6 - [TTTGTCTAATTT] 187 (86.58)
6 - .ATTGGCTTCCTC. 146 (93.19)
6 - .ATTTGAATCATT. 127 (90.40)
6 - [TTGGGCTTCTGT] 92 (88.98)
6 - .TTTTGCATTTTT. 54 (91.14)
6 - [TTTTTCTGATTT] 47 (87.31)
6 - .TTTGTGTTCTTT. 19 (90.64)
7 + .ATTGGCTCAATT. 146 (93.39)
7 - [ATGTGCGTCTTT] 199 (89.84)
7 - [TTTATATTTTTT] 190 (85.12)
7 - .ATTGACTTCGTC. 114 (94.29)
7 - [ATGGAGATTTTT] 66 (86.24)
8 + [ATTGGCAAAATT] 146 (88.32)
8 - [ATTAGTTGTGTT] 216 (88.54)
8 - .TTGTGTTTCGTT. 211 (90.02)
8 - .ATTGCCATCTTT. 94 (93.16)
8 - [TCTTGCTTTATT] 83 (86.06)
8 - [CTTGCTTTATTT] 82 (85.78)
8 - [CTTGTTTTAATT] 45 (86.18)
8 - [TTTAGCATATTG] 29 (85.13)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 23 2 1 5| 15 0 0 6
2 0 1 2 28| 0 0 1 20
3 0 1 5 25| 0 0 2 19
4 4 0 18 9| 2 0 9 10
5 5 2 19 5| 4 1 11 5
6 2 22 3 4| 1 16 2 2
7 6 4 1 20| 6 2 0 13
8 1 5 3 22| 0 2 1 18
9 6 19 0 6| 4 11 0 6
10 5 2 14 10| 3 1 8 9
11 1 0 2 28| 0 0 0 21
12 0 4 2 25| 0 2 0 19





*** Interesting motifs (not highest-ranking) can also be :


AAATTGGCTC
GAGCCAATTT

3 redundant motifs found:
AATTGGCTCA - ATTGGCTC - AATTGGCT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AAATTGGCTC. 144 (100.00)
1 - [AAATTGAGCC] 149 (85.46)
2 + [AATTTGTTTC] 109 (85.00)
2 + [AAAATGAGTC] 224 (87.18)
2 - .AAAATGACTC. 229 (92.04)
3 - [AAATTAACTG] 132 (85.96)
4 + .AAAATGTCTC. 271 (90.85)
4 - .AAATTGGATT. 33 (91.23)
5 + .AAATTAGCTC. 30 (94.88)
5 - [AAATTGGGCT] 150 (85.76)
5 - [AATTGGGCTC] 149 (88.09)
6 - [AAATTGCTTT] 163 (86.67)
6 - .AAATTGGCTT. 150 (96.93)
7 + [CAATTAGCTC] 122 (87.49)
7 + .AAATTGGCTC. 144 (100.00)
7 - [TAATTGACTT] 118 (87.35)
8 - [AAATTCTCTC] 167 (89.48)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 25 2 2 3| 7 0 0 0
2 30 1 0 1| 7 0 0 0
3 27 1 0 4| 7 0 0 0
4 5 2 1 24| 2 0 0 5
5 2 1 3 26| 0 0 0 7
6 4 3 23 2| 1 0 6 0
7 6 3 19 4| 1 0 5 1
8 3 21 4 4| 1 6 0 0
9 2 3 1 26| 0 0 0 7
10 2 20 3 7| 0 5 0 2






TTGGCTTCGTTA
TAACGAAGCCAA

2 redundant motifs found:
ATTGGCTTCGTT - TTGGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTGACTTCATCA. 54 (91.81)
1 + .TTGGCTCAATTT. 147 (90.28)
1 - [TTGTGTTGATTA] 113 (86.64)
2 + [CTGATTTCTTTA] 13 (86.46)
2 + [GTGGCATTGTTA] 135 (85.42)
2 + .TTGGCTTCGTTA. 147 (100.00)
2 - [TTTACTGCTTTA] 68 (89.99)
3 + [TTAGCCCAGTTA] 126 (86.97)
3 + [TTTACTTTTTTT] 223 (86.07)
4 + .TTAGTTTAGTTA. 147 (91.27)
5 + [TTTGCATATTTT] 157 (87.30)
5 - .TTGGGCTCGTTA. 145 (91.55)
5 - [TTAACTCTTTTA] 136 (86.07)
5 - .TTAACTTCTTTT. 127 (90.13)
5 - [TTTTTTTCTTTT] 119 (86.45)
5 - [TGGGCTCCGTGA] 48 (89.01)
6 - .TTGGCTTCCTCA. 145 (90.61)
6 - [TTTGAATCATTA] 126 (88.10)
6 - [TGGGCTTCTGTC] 91 (85.03)
6 - .TTGTGTTCTTTA. 18 (91.50)
7 + [TTGGCTCAATTC] 147 (89.67)
7 - [TGTGCGTCTTTA] 198 (86.61)
7 - .TTGACTTCGTCT. 113 (90.21)
8 + [TTGGCAAAATTA] 147 (86.63)
8 - [TGTGTTTCGTTG] 210 (86.39)
8 - [TTGCCATCTTTC] 93 (85.87)
8 - [TTGTTTTAATTT] 44 (86.13)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 1 1 24| 0 0 0 9
2 1 1 4 20| 0 0 0 9
3 4 0 17 5| 2 0 7 0
4 5 1 17 3| 3 0 5 1
5 2 17 3 4| 0 6 2 1
6 4 2 1 19| 0 1 0 8
7 1 5 3 17| 0 1 0 8
8 5 17 2 2| 2 7 0 0
9 6 1 12 7| 2 1 4 2
10 1 0 1 24| 0 0 0 9
11 0 3 2 21| 0 3 0 6
12 17 3 2 4| 6 0 0 3






ATTGGCTTCG
CGAAGCCAAT

3 redundant motifs found:
TATTGGCTTCGT - ATTGGCTTCGTT - TTGGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [CTTGACTTCA] 53 (89.38)
1 + [ATCGTCTTCT] 74 (89.26)
1 + [AGTGTCTTCT] 133 (89.26)
1 + .ATTGGCTCAA. 146 (91.73)
1 - .ATTGGCTGTT. 258 (90.43)
1 - [CTTGGCTGTG] 180 (86.36)
2 + .ATTTGTTTCT. 110 (90.06)
2 + [AGTGGCATTG] 134 (85.99)
2 + .ATTGGCTTCG. 146 (100.00)
2 - [ATTTACTGCT] 71 (85.20)
3 + [TTTTGCTTTT] 215 (85.08)
3 - [ATTTTCTTTT] 201 (85.34)
4 + [ATTAGTTTAG] 146 (86.26)
4 - .ATTGGATTAC. 31 (90.30)
5 + [ATTTGCATAT] 156 (85.61)
5 - .ATTGGGCTCG. 148 (90.18)
5 - [ATTGGGCTCC] 52 (88.34)
5 - [TTGGGCTCCG] 51 (86.63)
5 - [AATGCCTTCA] 2 (86.76)
6 - [ATTGCTTTTC] 161 (85.85)
6 - .ATTGGCTTCC. 148 (98.16)
6 - [TTGGGCTTCT] 94 (88.99)
7 + .ATTGGCTCAA. 146 (91.73)
7 - [ATTGAATTCC] 240 (89.65)
7 - .ATTGACTTCG. 116 (96.20)
8 - [ATTGCCATCT] 96 (89.26)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 18 2 1 2| 9 0 0 0
2 1 1 2 19| 0 0 0 9
3 0 2 2 19| 0 0 0 9
4 1 0 20 2| 0 0 8 1
5 3 2 16 2| 1 0 8 0
6 2 16 2 3| 1 6 1 1
7 2 2 0 19| 0 1 0 8
8 0 4 2 17| 0 2 1 6
9 4 16 0 3| 3 5 0 1
10 4 4 9 6| 2 2 3 2






GACGAAGTCAAT
ATTGACTTCGTC

3 redundant motifs found:
AACGAGCCCAAT - GAGGAAGCCAAT - ACGAAGTCAA -

Best occurrences (match percentage):
Seq St oligo pos match
1 - [GATGATCACAAA] 156 (85.44)
1 - [GAAGAAGAAGAA] 86 (88.37)
1 - [GAAGAAGAAGAA] 83 (88.37)
1 - [GAAGAAGAAGAA] 80 (88.37)
1 - .GAAGAAGACGAT. 74 (93.20)
1 - [GACGATGATGAT] 68 (86.79)
1 - .GATGAAGTCAAG. 53 (93.15)
2 + .AAAGCAGTAAAT. 69 (90.22)
2 - .AACGAAGCCAAT. 146 (96.05)
2 - [AAAGAAATCAGT] 12 (87.71)
3 + [AAAAAAGAAAAT] 199 (88.16)
3 - [AAAAAAGTAAAA] 222 (87.85)
3 - [CACCAACTAAAT] 138 (85.75)
4 + [AACAAGGAAAAT] 264 (85.46)
5 + [AAAAAAGAAAAA] 117 (85.67)
5 + .AAAGAAGTTAAA. 128 (92.90)
5 + [AACGAGCCCAAT] 146 (89.94)
5 + [GGAGAAGAAGAT] 185 (86.61)
5 + .GAAGAAGATAAA. 188 (91.93)
5 - [GACGAGCTAATT] 31 (86.06)
6 + .AAAGAACACAAA. 19 (90.72)
6 + .GAGGAAGCCAAT. 146 (94.26)
7 + .GACGAAGTCAAT. 114 (100.00)
7 + [CGGGAATTCAAT] 238 (86.48)
7 - [GATGAGGTAAAG] 91 (87.62)
8 + [AAAGATGGCAAT] 94 (89.37)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 6 2 11 1| 4 0 5 0
2 17 1 2 0| 9 0 0 0
3 7 9 2 2| 5 2 1 1
4 1 1 17 1| 0 0 9 0
5 18 1 1 0| 8 1 0 0
6 15 0 3 2| 9 0 0 0
7 1 3 13 3| 0 1 8 0
8 4 3 1 12| 3 2 0 4
9 4 13 0 3| 1 6 0 2
10 16 1 2 1| 8 0 1 0
11 16 2 1 1| 9 0 0 0
12 4 0 2 14| 3 0 1 5






ATTGGCTC
GAGCCAAT

4 redundant motifs found:
AATTGGCTCA - AAATTGGCTC - AATTGGCT - ATTGGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTTGTCTC. 42 (92.45)
1 + [AGTGTCTT] 133 (85.40)
1 + .ATTGGCTC. 146 (100.00)
1 - .ATTGGCTG. 260 (94.46)
1 - [CTTGGCTG] 182 (86.91)
1 - [ATGCTCTC] 12 (85.27)
2 + .ATTGGCTT. 146 (96.31)
2 - .ATTTTCTC. 275 (91.53)
2 - [AATGACTC] 229 (88.50)
2 - [TTTTTCTC] 220 (86.91)
2 - .GTTGTCTC. 45 (91.37)
3 + [ATTAGCCC] 125 (87.43)
3 + [TTTTGCTT] 215 (86.14)
3 - [ATTTTCTT] 203 (87.84)
4 + .AATGTCTC. 273 (90.94)
4 - [GTTTGCTC] 205 (88.76)
4 - [ATTGGATT] 33 (88.19)
5 + .ATTAGCTC. 32 (95.54)
5 - [TTTAACTC] 233 (85.55)
5 - [TTGGGCTC] 149 (89.11)
5 - [TTGGGCTC] 53 (89.11)
6 - [TTTGTCTA] 191 (85.06)
6 - .ATTGGCTT. 150 (96.31)
6 - [TTGGGCTT] 96 (85.42)
7 + .ATTAGCTC. 124 (95.54)
7 + .ATTGGCTC. 146 (100.00)
7 - .ATTGACTT. 118 (90.94)
8 + [ATTCCCTC] 116 (87.24)
8 - [AATATCTC] 190 (86.48)
8 - .ATTCTCTC. 167 (91.53)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 17 1 2 3| 11 0 1 1
2 2 0 1 20| 1 0 0 12
3 0 0 2 21| 0 0 0 13
4 3 2 16 2| 2 1 9 1
5 2 1 15 5| 1 0 7 5
6 1 21 0 1| 0 13 0 0
7 1 1 0 21| 0 0 0 13
8 1 16 2 4| 0 9 1 3






TATTGGCTTCGT
ACGAAGCCAATA

3 redundant motifs found:
ATTGGCTTCGTT - ATTGGCTTCG - TTGGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .TCTTGACTTCAT. 52 (92.62)
1 + [CATCGTCTTCTT] 73 (88.16)
1 + .AATTGGCTCAAT. 145 (92.41)
1 + [ATTTGTGATCAT] 155 (86.55)
1 - [TGCTGCCTTCTT] 187 (86.47)
1 - [TCTTGGCTGTGT] 179 (87.93)
2 + [AAGTGGCATTGT] 133 (88.99)
2 + .TATTGGCTTCGT. 145 (100.00)
2 - [ATTTGCAATTGT] 28 (85.43)
3 + .TATCGTATTCAT. 54 (90.79)
3 + [TTTTTACTTTTT] 221 (88.25)
3 + [AATGTTCATCGT] 279 (85.32)
3 - .TATTTTCTTTTT. 200 (91.08)
4 + [AATCTCCTCCGT] 125 (85.54)
4 + [AATTAGTTTAGT] 145 (86.44)
4 + [TAGTGCATTTGT] 157 (87.77)
4 - [ATTTGTCATTTT] 59 (87.80)
4 - [TTTTGCAATATT] 51 (85.62)
4 - [AATTGGATTACA] 30 (86.55)
5 + [AATTTGCATATT] 155 (89.03)
5 - .TATCGGATTTCT. 301 (90.21)
5 - [TTTGAGCTTTTT] 270 (85.55)
5 - [ATTTATCTTCTT] 189 (88.71)
5 - .AATTGGGCTCGT. 147 (91.32)
5 - [TTTTAACTTCTT] 129 (89.79)
5 - [TTTTTTCTTTTT] 118 (88.25)
5 - [TATTGGGCTCCG] 51 (86.37)
5 - [ATTGGGCTCCGT] 50 (88.64)
6 - .AATTGGCTTCCT. 147 (97.39)
6 - .TATTTGAATCAT. 128 (90.25)
6 - [ATTTGAATCATT] 127 (85.08)
6 - [TTTGGGCTTCTG] 93 (87.76)
6 - [TTTTGCATTTTT] 54 (89.07)
6 - .TTTTGTGTTCTT. 20 (90.95)
7 + .AATTGGCTCAAT. 145 (92.41)
7 - [TATTGAATTCCC] 239 (87.87)
7 - .AATTGACTTCGT. 115 (96.43)
8 + [AAGTTGCTTTTT] 54 (87.89)
8 + [TATTGGCAAAAT] 145 (87.85)
8 - .AATTGCCATCTT. 95 (92.39)
8 - [ATTTAGCATATT] 30 (85.44)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 9 1 0 16| 6 0 0 7
2 18 2 2 4| 11 1 0 1
3 0 1 2 23| 0 0 0 13
4 0 3 2 21| 0 2 0 11
5 2 0 21 3| 0 0 11 2
6 4 3 15 4| 2 1 7 3
7 5 17 3 1| 3 8 2 0
8 4 2 0 20| 2 1 0 10
9 1 4 1 20| 0 2 0 11
10 4 17 0 5| 2 9 0 2
11 6 4 9 7| 5 2 3 3
12 1 1 2 22| 0 0 0 13