Your Weeder Web Results

NEW: Starting a large job on file /tmp/motif_master/62_WEEDER/aiy_100.fa

Organism code: CE

Processing both strands

/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/62_WEEDER/aiy_100.fa CE large S


Searching for motifs of length 6 with 1 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/62_WEEDER/aiy_100.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) ATTGGC 2.09
2) TTGGCT 1.72
3) AGCCCA 1.54
4) TCGTTA 1.51
5) GGCTTC 1.37
6) AATTAG 1.37
7) CTGGGC 1.37
8) CGAGCC 1.34
9) CGTTAA 1.34
10) CACAGC 1.24

Elapsed time : 0 min. 0 sec.


Searching for motifs of length 8 with 2 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/62_WEEDER/aiy_100.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) AATTGGCT 2.42
2) ATTGGCTC 2.34
3) GGCTTCGT 2.24
4) AACTGGGC 2.13
5) TATTGGCT 2.03
6) ATTGGCTT 2.01
7) TTGGCTTC 2.01
8) AGCCCAGT 1.98
9) TTAACGAG 1.96
10) TGGCTTCG 1.95

Elapsed time : 0 min. 1 sec.


Searching for motifs of length 10 with 3 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/62_WEEDER/aiy_100.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) TTGGCTTCGT 3.18
2) ATTGGCTTCG 2.95
3) AAATTGGCTC 2.64
4) AATTGGCTCA 2.47
5) GCTTCGTTAA 2.43
6) GAAGCCAATT 2.41
7) ACGAAGTCAA 2.41
8) AATTAGCCCA 2.39
9) CGAGCCCAAT 2.32
10) GGCTTCGTTA 2.30

Elapsed time : 0 min. 23 sec.


Searching for motifs of length 12 with 4 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/62_WEEDER/aiy_100.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) ATTGGCTTCGTT 4.50
2) TTGGCTTCGTTA 4.44
3) TATTGGCTTCGT 4.11
4) ATTGGCTCAATT 4.08
5) TGGCTTCGTTAA 3.94
6) AACGAGCCCAAT 3.90
7) AATTAGCCCAGT 3.82
8) AATTGGCTCAAT 3.79
9) ACGAAGTCAATT 3.71
10) TAACGAGCCCAA 3.66

Elapsed time : 2 min. 53 sec.


Your sequences:

Sequence 1 : >III:5795889..5795988
Sequence 2 : >X:11767528..11767627
Sequence 3 : >III:7833675..7833774
Sequence 4 : >II:10912813..10912912
Sequence 5 : >I:14142202..14142301
Sequence 6 : >X:7118584..7118683
Sequence 7 : >IV:3625782..3625881
Sequence 8 : >X:15292988..15293087


**** MY ADVICE ****


*** Interesting motifs (highest-ranking) seem to be :


ATTGGC
GCCAAT

5 redundant motifs found:
ATTGGCTT - TATTGGCT - ATTGGCTC - AATTGGCT - TTGGCT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [ACTGGG] 26 (88.03)
1 + .ATTGGC. 46 (100.00)
1 - .CTTGGC. 84 (93.91)
1 - [ATTGAG] 51 (87.81)
1 - [ATTAGG] 11 (89.96)
2 + .AGTGGC. 34 (94.12)
2 + .ATTGGC. 46 (100.00)
3 + .ATTAGC. 25 (96.05)
3 + [ATTTGG] 61 (88.26)
3 - [ATTAAC] 34 (89.96)
3 - [ACTGGG] 30 (88.03)
4 - [ATTAAC] 42 (89.96)
5 + .ATTTGC. 56 (94.35)
5 + .ACTGGC. 73 (94.12)
5 - .ATTGGG. 52 (93.91)
6 - .ATTGGC. 52 (100.00)
7 + .ATTAGC. 24 (96.05)
7 + .ATTGGC. 46 (100.00)
7 - [ATTGAG] 51 (87.81)
7 - .ATTGAC. 20 (93.91)
8 + [ATTTAC] 4 (88.26)
8 + .ATTGGC. 46 (100.00)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 12 1 0 0| 12 1 0 0
2 0 1 1 11| 0 1 1 11
3 0 0 0 13| 0 0 0 13
4 2 0 10 1| 2 0 10 1
5 1 0 12 0| 1 0 12 0
6 0 12 1 0| 0 12 1 0






AATTGGCT
AGCCAATT

9 redundant motifs found:
GAAGCCAATT - AATTGGCTCA - AAATTGGCTC - ATTGGCTT - TTGGCTTC - TATTGGCT - ATTGGCTC - TTGGCT - ATTGGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATTGGCT. 45 (100.00)
1 - [TCTTGGCT] 83 (88.44)
2 + .AATTTGTT. 9 (91.30)
2 + [AAGTGGCA] 33 (88.71)
2 + .TATTGGCT. 45 (94.64)
2 - [AATTATTT] 5 (86.02)
3 + .AATTAGCC. 24 (90.21)
3 + [ATTTAGTT] 38 (86.97)
3 + [ATTTGGGT] 61 (88.84)
3 + [AAGTGGTT] 86 (89.48)
3 - .AATTAACT. 33 (90.21)
3 - [ACTGGGCT] 28 (87.23)
4 + .AATTAGTT. 45 (92.08)
4 - [AATTAACA] 41 (85.25)
5 + .AATTTGCA. 55 (90.53)
5 - [ATTTATCT] 101 (85.11)
5 - [AATTGGGC] 51 (87.89)
5 - [ATTGGGCT] 50 (88.32)
6 - [ATTTGTCT] 92 (88.84)
6 - [ATTTTGTT] 83 (86.20)
6 - [AAATTGCT] 65 (87.30)
6 - [AATTGCTT] 64 (89.75)
6 - .AATTGGCT. 51 (100.00)
7 + .AATTAGCT. 23 (96.27)
7 + .AATTGGCT. 45 (100.00)
7 - .AATTGACT. 19 (93.94)
8 + [AATTCCCT] 15 (88.35)
8 + [TATTGGCA] 45 (89.67)
8 - [AATTCTCT] 68 (88.35)
8 - [AATTCGTA] 11 (85.25)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 22 0 0 3| 10 0 0 1
2 20 2 0 3| 11 0 0 0
3 1 1 2 21| 0 0 0 11
4 0 0 2 23| 0 0 0 11
5 4 2 16 3| 4 0 5 2
6 2 2 19 2| 2 0 9 0
7 0 19 2 4| 0 9 0 2
8 3 2 1 19| 1 1 0 9






TTGGCTTCGT
ACGAAGCCAA

8 redundant motifs found:
TATTGGCTTCGT - TTGGCTTCGTTA - ATTGGCTTCGTT - GGCTTCGTTA - ATTGGCTTCG - TGGCTTCG - TTGGCTTC - GGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTGGCTCAAT. 47 (93.99)
1 + [TTGTGATCAT] 57 (86.45)
1 - .CTGCCTTCTT. 87 (91.17)
1 - .TTGGCTGTGT. 79 (93.99)
2 + [GTGGCATTGT] 35 (89.80)
2 + .TTGGCTTCGT. 47 (100.00)
3 + [TTAGCCCAGT] 26 (89.99)
3 + .TTAATTTAGT. 35 (90.19)
4 + .TTAGTTTAGT. 47 (92.60)
5 - .TTATCTTCTT. 89 (93.26)
5 - .TTGGGCTCGT. 47 (91.98)
5 - [TTAACTCTTT] 38 (89.67)
5 - .TTAACTTCTT. 29 (94.47)
6 - [CTAATTTTGT] 84 (85.48)
6 - .TTGGCTTCCT. 47 (96.88)
7 + .TTGGCTCAAT. 47 (93.99)
7 - .TTGACTTCGT. 15 (97.59)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 1 1 10| 0 1 0 11
2 0 0 0 12| 0 0 0 12
3 3 0 9 0| 4 0 8 0
4 2 1 8 1| 3 1 7 1
5 0 10 1 1| 0 9 1 2
6 1 1 0 10| 0 1 0 11
7 0 2 1 9| 0 2 1 9
8 3 7 0 2| 4 7 0 1
9 2 1 6 3| 2 1 6 3
10 0 0 0 12| 0 0 0 12






ATTGGCTTCGTT
AACGAAGCCAAT

6 redundant motifs found:
TGGCTTCGTTAA - ATTGGCTCAATT - TATTGGCTTCGT - TTGGCTTCGTTA - ATTGGCTTCG - TTGGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TTTTGCCTAATC] 6 (87.69)
1 + .ATTGGCTCAATT. 46 (97.14)
1 - [CTTGGCTGTGTG] 78 (87.87)
1 - [ATTGAGCCAATT] 45 (88.56)
2 + .AGTGGCATTGTT. 34 (94.91)
2 + .ATTGGCTTCGTT. 46 (100.00)
3 + .ATTAGCCCAGTT. 25 (94.10)
3 + [TTTGGGTAATTT] 62 (86.96)
4 + [TGTTAATTAGTT] 41 (85.62)
4 + .ATTAGTTTAGTT. 46 (94.57)
4 + [AGTGCATTTGTT] 58 (89.82)
5 + .ATTTGCATATTT. 56 (94.26)
5 - .ATTGGGCTCGTT. 46 (94.12)
5 - [TTTAACTTCTTT] 28 (89.53)
5 - [TTTTGCACATTT] 3 (88.58)
6 + [ATTAGACAAATC] 89 (86.13)
6 - .ATTTGTCTAATT. 88 (90.65)
6 - .ATTGGCTTCCTC. 46 (94.16)
6 - .ATTTGAATCATT. 27 (92.74)
7 + .ATTGGCTCAATT. 46 (97.14)
7 - [ATTGAGCCAATT] 45 (88.56)
7 - .ATTGACTTCGTC. 14 (94.60)
8 + .ATTGGCAAAATT. 46 (94.26)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 13 1 0 1| 13 0 0 0
2 0 0 2 13| 0 0 1 12
3 0 0 0 15| 0 0 0 13
4 3 0 10 2| 2 0 8 3
5 2 1 12 0| 1 0 12 0
6 2 11 1 1| 1 9 1 2
7 4 2 0 9| 4 3 0 6
8 1 3 1 10| 1 3 0 9
9 6 6 0 3| 7 5 0 1
10 4 1 8 2| 5 1 6 1
11 0 0 0 15| 0 0 0 13
12 0 2 1 12| 0 2 0 11





*** Interesting motifs (not highest-ranking) can also be :


TTGGCT
AGCCAA

8 redundant motifs found:
ATTGGCTT - TTGGCTTC - TATTGGCT - ATTGGCTC - AATTGGCT - CGAGCC - GGCTTC - ATTGGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTGCCT. 8 (93.68)
1 + [TGGGCA] 28 (88.50)
1 + .TTGGCT. 47 (100.00)
1 - .TTGGCT. 83 (100.00)
1 - [TTGTGT] 19 (86.86)
2 + .TTGGCT. 47 (100.00)
3 + .TTGGGT. 63 (93.18)
3 - [TTAACT] 33 (86.86)
3 - .TGGGCT. 28 (95.32)
5 - [TTATCT] 93 (86.86)
5 - .TGGGCT. 50 (95.32)
5 - [TTAACT] 42 (86.86)
5 - [TTAACT] 33 (86.86)
6 - .TTGTCT. 92 (93.68)
6 - .TTGGCT. 51 (100.00)
7 + .TTAGCT. 25 (93.18)
7 + .TTGGCT. 47 (100.00)
7 - .TTGACT. 19 (93.68)
8 + .TTGGCA. 47 (93.18)
8 - [TTGCCA] 48 (86.86)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 0 0 13| 0 0 0 13
2 0 0 2 11| 0 0 2 11
3 1 0 12 0| 1 0 12 0
4 1 1 10 1| 1 1 10 1
5 0 12 1 0| 0 12 1 0
6 1 0 0 12| 1 0 0 12






ATTGGCTC
GAGCCAAT

7 redundant motifs found:
AATTGGCTCA - AAATTGGCTC - ATTGGCTT - TATTGGCT - AATTGGCT - TTGGCT - ATTGGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [AGTGTCTT] 33 (87.14)
1 + .ATTGGCTC. 46 (100.00)
1 - .CTTGGCTG. 82 (90.02)
2 + [AGTGGCAT] 34 (86.93)
2 + .ATTGGCTT. 46 (97.81)
3 + .ATTAGCCC. 25 (91.30)
3 + [AGTGGTTC] 87 (88.92)
3 - [ATTAACTG] 32 (86.88)
4 + [ATTAGTTT] 46 (88.92)
5 - [TTGGGCTC] 49 (89.12)
6 - [ATTGCTTT] 63 (87.14)
6 - .ATTGGCTT. 50 (97.81)
7 + .ATTAGCTC. 24 (96.65)
7 + .ATTGGCTC. 46 (100.00)
7 - .ATTGACTT. 18 (92.68)
8 + .ATTCCCTC. 16 (91.51)
8 + [ATTCTTTC] 24 (85.98)
8 + .ATTGGCAA. 46 (90.02)
8 - .ATTCTCTC. 67 (91.51)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 11 1 0 1| 10 1 0 0
2 0 0 1 12| 0 0 0 11
3 0 0 1 12| 0 0 0 11
4 2 2 9 0| 2 2 7 0
5 1 1 10 1| 1 1 8 1
6 0 12 0 1| 0 11 0 0
7 1 1 0 11| 1 1 0 9
8 1 8 1 3| 1 6 1 3






ATTGGCTTCG
CGAAGCCAAT

7 redundant motifs found:
TATTGGCTTCGT - ATTGGCTTCGTT - GAAGCCAATT - TTGGCTTCGT - TGGCTTCG - ATTGGCTT - TTGGCTTC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AGTGTCTTCT. 33 (92.23)
1 + .ATTGGCTCAA. 46 (94.86)
1 - .CTTGGCTGTG. 80 (91.13)
2 + .ATTTGTTTCT. 10 (92.42)
2 + .AGTGGCATTG. 34 (92.23)
2 + [ATTGTTATTG] 40 (88.87)
2 + .ATTGGCTTCG. 46 (100.00)
3 + [ATTAGCCCAG] 25 (89.53)
3 + .AGTGGTTCTG. 87 (91.30)
4 + .ATTAGTTTAG. 46 (93.08)
5 + [ATTTGCATAT] 56 (89.99)
5 - .ATTGGGCTCG. 48 (93.08)
5 - [CTTTTTTTCT] 22 (85.14)
6 - [ATTTGTCTAA] 90 (87.75)
6 - .ATTGGCTTCC. 48 (97.10)
7 + .ATTAGCTCTA. 24 (90.65)
7 + .ATTGGCTCAA. 46 (94.86)
7 - [ATTTTTTTTT] 87 (87.09)
7 - .ATTGACTTCG. 16 (96.45)
8 + [ATTTACATAC] 4 (85.32)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 10 1 0 0| 12 1 0 0
2 0 0 2 9| 0 0 3 10
3 0 0 0 11| 0 0 0 13
4 1 0 9 1| 2 0 10 1
5 1 0 9 1| 1 0 11 1
6 0 8 1 2| 0 9 1 3
7 1 1 0 9| 1 1 0 11
8 0 2 1 8| 0 4 1 8
9 3 6 0 2| 3 6 0 4
10 2 1 6 2| 3 1 7 2






TTGGCTTCGTTA
TAACGAAGCCAA

4 redundant motifs found:
TGGCTTCGTTAA - ATTGGCTTCGTT - GGCTTCGTTA - TTGGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TTTGCCTAATCA] 7 (89.49)
1 + .TTGGCTCAATTT. 47 (95.28)
1 - [TTGGCTGTGTGT] 77 (88.77)
1 - [TTGAGCCAATTT] 44 (87.33)
1 - .TTGTGTTGATTA. 13 (90.75)
2 + .GTGGCATTGTTA. 35 (91.77)
2 + .TTGGCTTCGTTA. 47 (100.00)
3 + .TTAGCCCAGTTA. 26 (93.44)
3 + [TTGGGTAATTTT] 63 (88.31)
3 + [TAATTTTCGTTA] 68 (88.91)
4 + .TTAGTTTAGTTA. 47 (95.38)
4 + [TTTGCAACATGA] 68 (85.85)
5 + [TTAAAAGAGTTA] 35 (85.85)
5 + [TTTGCATATTTT] 57 (88.96)
5 - [TTATCTTCTTCT] 87 (88.04)
5 - .TTGGGCTCGTTA. 45 (94.80)
5 - [TTAACTCTTTTA] 36 (88.45)
5 - .TTAACTTCTTTT. 27 (90.93)
5 - [TTTTTTTCTTTT] 19 (86.10)
5 - [TTTTCTTTTTTT] 16 (86.67)
5 - [TTTGCACATTTT] 2 (87.02)
6 - [TTTGTCTAATTT] 87 (88.31)
6 - [TTGTCTAATTTT] 86 (88.15)
6 - .TTGGCTTCCTCA. 45 (93.75)
6 - [TTATTTGAATCA] 29 (85.26)
6 - [TTTGAATCATTA] 26 (89.86)
7 + .TTGGCTCAATTC. 47 (93.04)
7 - [TTATATTTTTTT] 101 (85.19)
7 - [TTGAGCCAATTT] 44 (87.33)
7 - .TTGACTTCGTCT. 13 (92.88)
8 + .TTGGCAAAATTA. 47 (93.04)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 0 1 14| 0 0 1 11
2 1 0 0 14| 0 0 0 12
3 4 0 10 1| 3 0 9 0
4 2 0 11 2| 2 0 9 1
5 1 10 2 2| 0 9 2 1
6 3 2 0 10| 2 2 0 8
7 1 3 1 10| 1 3 0 8
8 5 7 1 2| 5 5 1 1
9 5 1 8 1| 4 1 6 1
10 0 0 0 15| 0 0 0 12
11 0 2 1 12| 0 2 0 10
12 10 1 0 4| 8 1 0 3






AGCCCA
TGGGCT

2 redundant motifs found:
AGCCCAGT - CTGGGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AGCCAA. 83 (100.00)
1 - .AGCCAA. 47 (100.00)
1 - .TGCCCA. 28 (94.33)
2 - .AGCCAA. 47 (100.00)
3 + .AGCCCA. 28 (99.45)
4 - [TGCAAA] 68 (89.76)
5 + [TGCAAA] 8 (89.76)
5 + .AGCCCA. 50 (99.45)
5 - [TGCAAA] 57 (89.76)
5 - [TGCACA] 6 (89.21)
6 + .AGCCAA. 51 (100.00)
6 + .AGCACA. 78 (94.33)
7 - .AGCCAA. 47 (100.00)
8 - .TGCCAA. 47 (94.88)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 8 0 0 1| 8 0 0 2
2 0 0 9 0| 0 0 10 0
3 0 9 0 0| 0 10 0 0
4 1 8 0 0| 1 9 0 0
5 5 4 0 0| 6 4 0 0
6 9 0 0 0| 10 0 0 0






GGCTTCGT
ACGAAGCC

4 redundant motifs found:
GGCTTCGTTA - TTGGCTTCGT - TGGCTTCG - GGCTTC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [GGCAGTGT] 30 (89.50)
1 - .GCCTTCTT. 87 (91.75)
1 - .GGCTGTGT. 79 (93.76)
1 - [AGTTTTGT] 21 (89.78)
2 + .GGCATTGT. 37 (94.00)
2 + .GGCTTCGT. 49 (100.00)
2 - [GGTCGTGT] 83 (85.52)
4 + .GCATTTGT. 61 (90.29)
4 + .GGCTTTGA. 83 (93.76)
4 - [AGCCTTCT] 79 (85.24)
5 - .GGGCTCGT. 47 (91.75)
5 - [AACTTCTT] 29 (88.67)
6 - [AATTTTGT] 84 (87.21)
6 - .GGCTTCCT. 47 (95.74)
7 - .GACTTCGT. 15 (97.43)
8 + .AGTTTCGT. 36 (91.51)
8 + [GAATTTCT] 71 (87.45)
8 - .GAATTCGT. 12 (93.45)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 1 0 9 0| 1 0 10 0
2 2 1 7 0| 2 2 7 0
3 1 7 1 1| 2 7 1 1
4 1 1 0 8| 1 1 0 9
5 0 0 1 9| 0 0 1 10
6 0 7 0 3| 0 7 0 4
7 0 1 8 1| 0 1 9 1
8 1 0 0 9| 1 0 0 10






AAATTGGCTC
GAGCCAATTT

3 redundant motifs found:
AATTGGCTCA - ATTGGCTC - AATTGGCT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AAATTGGCTC. 44 (100.00)
1 - .AAATTGAGCC. 49 (90.09)
2 + .AATTTGTTTC. 9 (91.64)
2 + [TTATTGGCTT] 44 (88.47)
2 - [AAATTATTTG] 4 (86.70)
3 + [GAATTAGCCC] 23 (89.60)
3 + [AATTTAGTTG] 37 (86.07)
3 + [CAAGTGGTTC] 85 (87.97)
3 - [AAATTAACTG] 32 (89.11)
3 - [AACTGGGCTA] 27 (85.26)
4 + [TAATTAGTTT] 44 (88.82)
5 - .AAATTGGGCT. 50 (90.96)
5 - .AATTGGGCTC. 49 (92.59)
6 + [AAATAGTTTC] 2 (89.39)
6 + [AAATAATCTT] 35 (86.86)
6 - [GATTTGTCTA] 101 (85.14)
6 - .AAATTGCTTT. 63 (92.31)
6 - .AAATTGGCTT. 50 (98.21)
6 - [AATTGGCTTC] 49 (86.69)
7 + .CAATTAGCTC. 22 (93.02)
7 + .AAATTGGCTC. 44 (100.00)
7 - [AATCCGGCTC] 59 (85.38)
7 - [GAATTGAGCC] 49 (86.26)
7 - .TAATTGACTT. 18 (91.73)
8 + [GAATTCCCTC] 14 (88.71)
8 + [AAATTATTCT] 53 (86.57)
8 - .AAATTCTCTC. 67 (93.36)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 13 2 2 2| 9 1 0 1
2 18 0 0 1| 11 0 0 0
3 15 1 0 3| 9 0 0 2
4 0 1 1 17| 0 0 0 11
5 1 1 2 15| 0 0 1 10
6 3 2 14 0| 1 1 9 0
7 3 2 11 3| 2 1 6 2
8 0 13 2 4| 0 7 2 2
9 0 3 0 16| 0 2 0 9
10 1 12 1 5| 0 7 0 4






TATTGGCTTCGT
ACGAAGCCAATA

4 redundant motifs found:
AATTGGCTCAAT - ATTGGCTTCGTT - ATTGGCTTCG - TTGGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATTGGCTCAAT. 45 (95.57)
1 - [TGCTGCCTTCTT] 87 (87.57)
1 - .TCTTGGCTGTGT. 79 (91.00)
1 - [AATTGAGCCAAT] 46 (85.48)
2 + .AAGTGGCATTGT. 33 (93.90)
2 + .TATTGGCTTCGT. 45 (100.00)
3 + [AATTAGCCCAGT] 24 (89.98)
3 + [AGTTAATTTAGT] 33 (86.08)
3 + [ATTTGGGTAATT] 61 (85.69)
3 - [AATTACCCAAAT] 61 (85.33)
3 - [AACTGGGCTAAT] 25 (86.82)
4 + .AATTAGTTTAGT. 45 (92.59)
4 + .TAGTGCATTTGT. 57 (90.63)
4 + [TGTTTGCAACAT] 66 (85.62)
5 + .AATTTGCATATT. 55 (91.21)
5 - .AATTGGGCTCGT. 47 (92.53)
5 - [TTTTAACTTCTT] 29 (88.70)
6 + [AATTAGACAAAT] 88 (85.33)
6 - .AATTGGCTTCCT. 47 (96.84)
6 - .TATTTGAATCAT. 28 (90.63)
6 - [ATTTGAATCATT] 27 (85.33)
7 + .AATTGGCTCAAT. 45 (95.57)
7 - [AATTGAGCCAAT] 46 (85.48)
7 - .AATTGACTTCGT. 15 (97.39)
8 + .TATTGGCAAAAT. 45 (92.49)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 7 0 0 7| 8 0 0 5
2 11 1 1 1| 12 1 0 0
3 0 1 2 11| 0 0 2 11
4 0 0 0 14| 0 0 0 13
5 2 0 11 1| 1 0 10 2
6 2 2 10 0| 1 1 11 0
7 2 10 1 1| 2 9 1 1
8 3 1 0 10| 4 1 0 8
9 1 2 1 10| 1 2 1 9
10 4 7 0 3| 5 5 0 3
11 4 1 7 2| 4 1 7 1
12 0 0 0 14| 0 0 0 13






TCGTTA
TAACGA

2 redundant motifs found:
TTAACGAG - CGTTAA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .TCGTTT. 3 (95.55)
2 + .TTGTTT. 12 (91.39)
2 + .TTGTTA. 41 (95.84)
2 + .TCGTTA. 53 (100.00)
2 + [TTGCTA] 91 (89.21)
2 - .TCGCTA. 66 (93.37)
2 - [TTCTTA] 57 (89.77)
2 - [TTATTT] 29 (85.32)
2 - [TTATTT] 5 (85.32)
3 + .TCGTTA. 74 (100.00)
4 + .TTGTTA. 40 (95.84)
4 + [TAATTA] 44 (87.85)
4 + [TAGTTT] 48 (89.47)
4 + .TAGTTA. 53 (93.92)
4 + .TTGTTT. 65 (91.39)
4 - [TAATTA] 44 (87.85)
5 - .TCGTTA. 45 (100.00)
5 - [TCTTTT] 37 (89.47)
5 - [TTCTTT] 28 (85.32)
5 - [TCTTTT] 27 (89.47)
5 - [TTTTTT] 25 (85.32)
5 - [TTTTTT] 24 (85.32)
5 - [TTCTTT] 20 (85.32)
5 - [TCTTTT] 19 (89.47)
5 - [TTTTTT] 17 (85.32)
5 - [TTTTTT] 16 (85.32)
5 - [TTTTTT] 15 (85.32)
5 - [TTTTTT] 14 (85.32)
5 - [TTTTTT] 13 (85.32)
5 - [TTTTTT] 12 (85.32)
5 - [TTTTTT] 11 (85.32)
6 + [TAGTTT] 5 (89.47)
6 - [TTATTT] 35 (85.32)
6 - .TCATTA. 26 (93.92)
7 - [TTTTTT] 90 (85.32)
7 - [TTTTTT] 89 (85.32)
7 - [TTTTTT] 88 (85.32)
7 - [TTTTTT] 87 (85.32)
7 - .TCCTTA. 78 (93.92)
7 - [TTTTTA] 41 (89.77)
7 - [TCCCTA] 8 (87.29)
8 + [TTCTTT] 25 (85.32)
8 + .TCGTTT. 40 (95.55)
8 + [TTCTTT] 59 (85.32)
8 + .TCTTTA. 60 (93.92)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 0 0 12| 0 0 0 14
2 1 9 0 2| 1 9 0 4
3 1 1 9 1| 1 1 11 1
4 0 1 0 11| 0 1 0 13
5 0 0 0 12| 0 0 0 14
6 10 0 0 2| 10 0 0 4






AACTGGGC
GCCCAGTT

2 redundant motifs found:
AGCCCAGT - CTGGGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AACTGGGC. 25 (100.00)
1 + .AAATTGGC. 44 (98.41)
1 - .AATTGAGC. 50 (96.85)
1 - .GATTAGGC. 10 (91.47)
2 + [AAATAGCG] 63 (87.68)
3 + .GAATTAGC. 23 (91.47)
3 + .AATTAGCC. 24 (91.47)
3 + [GATTTGGG] 60 (89.21)
3 + [AATTTTCG] 69 (85.30)
3 - .AAATTACC. 66 (91.47)
3 - .AACTGGGC. 29 (100.00)
4 + .GACTAGGC. 91 (92.01)
5 + .AAATGTGC. 3 (96.09)
5 + .AACTGGCG. 72 (91.34)
5 - .AAATATGC. 60 (92.43)
5 - .AAATTGGG. 52 (94.08)
5 - .AATTGGGC. 51 (99.46)
6 - .AAATTGGC. 52 (98.41)
7 + .AAATTGGC. 44 (98.41)
7 - .AATTGAGC. 50 (96.85)
8 - .AATTTTGC. 50 (93.96)
8 - [GAATGAGG] 20 (88.74)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 10 0 1 0| 15 0 3 0
2 11 0 0 0| 18 0 0 0
3 4 4 0 3| 8 4 0 6
4 0 0 0 11| 0 0 0 18
5 1 0 7 3| 4 0 7 7
6 2 0 8 1| 4 0 11 3
7 0 1 10 0| 0 3 15 0
8 0 10 1 0| 0 16 2 0






AATTGGCTCA
TGAGCCAATT

5 redundant motifs found:
AATTGGCTCAAT - AATTAGCCCA - AAATTGGCTC - ATTGGCTC - AATTGGCT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATTGGCTCA. 45 (100.00)
1 - [AATTGAGCCA] 48 (89.23)
2 + [TATTGGCTTC] 45 (88.36)
2 - [ATTTTTCTTA] 57 (85.02)
3 + [ATTTGAATTA] 19 (85.02)
3 + .AATTAGCCCA. 24 (92.79)
3 + .ATTTGGGTAA. 61 (90.45)
3 - [ACTGGGCTAA] 26 (85.80)
4 + .AATTAGTTTA. 45 (90.72)
5 + [AATTTGCATA] 55 (86.45)
5 - [AATTGGGCTC] 49 (85.91)
6 + [AATAGTTTCA] 3 (86.32)
6 - .ATTTGTCTAA. 90 (91.43)
6 - .AATTGGCTTC. 49 (93.79)
6 - [ATTTGAATCA] 29 (87.23)
7 + .AATTAGCTCT. 23 (91.85)
7 + .AATTGGCTCA. 45 (100.00)
7 - [AATTGAGCCA] 48 (89.23)
7 - .AATTGACTTC. 17 (90.89)
8 + [AATTCCCTCA] 15 (89.10)
8 + [TATTGGCAAA] 45 (87.42)
8 - [AAATATCTCA] 89 (86.98)
8 - .AATTCTCTCA. 66 (92.30)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 21 0 0 2| 10 0 0 0
2 18 1 0 4| 8 0 0 2
3 1 1 1 20| 0 0 0 10
4 1 0 2 20| 0 0 0 10
5 4 2 16 1| 3 1 6 0
6 4 1 14 4| 1 0 7 2
7 1 16 3 3| 0 8 1 1
8 2 3 1 17| 0 1 0 9
9 5 13 0 5| 2 5 0 3
10 17 3 1 2| 7 2 0 1






CTGGGC
GCCCAG

3 redundant motifs found:
AGCCCAGT - AACTGGGC - AGCCCA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .CTGGGC. 27 (100.00)
1 - .CTTGGC. 84 (97.30)
1 - .TTAGGC. 10 (93.90)
3 - .CTGGGC. 29 (100.00)
4 + .CTAGGC. 93 (97.30)
5 - .TTGGGC. 51 (96.59)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 4 0 1| 0 4 0 2
2 0 0 0 5| 0 0 0 6
3 1 0 3 1| 2 0 3 1
4 0 0 5 0| 0 0 6 0
5 0 0 5 0| 0 0 6 0
6 0 5 0 0| 0 6 0 0






TATTGGCT
AGCCAATA

6 redundant motifs found:
ATTGGCTT - TTGGCTTC - ATTGGCTC - AATTGGCT - TTGGCT - ATTGGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTTTGCCT. 6 (92.37)
1 + .AATTGGCT. 45 (100.00)
1 - .TCTTGGCT. 83 (95.98)
2 + .TATTGGCT. 45 (99.59)
3 - .AATTAACT. 33 (92.54)
4 - [AATTAACA] 41 (88.68)
5 - [TTTTAACT] 33 (88.52)
6 - .AATTGGCT. 51 (100.00)
7 + .AATTAGCT. 23 (96.14)
7 + .AATTGGCT. 45 (100.00)
7 - .AATTGACT. 19 (96.39)
8 + .TATTGGCA. 45 (95.73)
8 - [TTTTGCCA] 48 (88.52)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 5 0 0 4| 6 0 0 4
2 7 1 0 1| 8 1 0 1
3 0 0 0 9| 0 0 0 10
4 0 0 0 9| 0 0 0 10
5 1 0 8 0| 2 0 8 0
6 1 1 7 0| 2 1 7 0
7 0 9 0 0| 0 10 0 0
8 1 0 0 8| 1 0 0 9






GCTTCGTTAA
TTAACGAAGC

2 redundant motifs found:
TGGCTTCGTTAA - GGCTTCGTTA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .GTCTTCTCAA. 36 (90.45)
1 - [GCCCAGTTTT] 23 (87.76)
2 + [TGTTTCTCAA] 13 (86.12)
2 + .GCATTGTTAT. 38 (92.73)
2 + .GCTTCGTTAA. 50 (100.00)
2 - .TTTTTCTTAA. 56 (91.28)
3 + .GCCCAGTTAA. 29 (94.30)
3 + .TTTTCGTTAA. 71 (96.15)
4 + .GACTTGTTAA. 37 (95.43)
4 + .GTTTAGTTAG. 50 (94.88)
4 - [GCCTTCTCAT] 76 (87.76)
5 - .GGCTCGTTAA. 44 (96.92)
6 - [GATTTGTCTA] 101 (89.50)
6 - .GCTTCCTCAA. 44 (93.24)
8 + .GTTTCGTTTA. 37 (96.15)
8 + [TTATTCTTTA] 56 (85.29)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 0 8 1| 0 0 9 2
2 1 4 1 3| 1 4 1 5
3 1 3 0 5| 1 4 0 6
4 0 1 0 8| 0 1 0 10
5 2 5 0 2| 2 5 0 4
6 0 1 8 0| 0 3 8 0
7 0 0 0 9| 0 0 0 11
8 0 1 0 8| 0 2 0 9
9 8 0 0 1| 10 0 0 1
10 7 0 1 1| 9 0 1 1






TGGCTTCGTTAA
TTAACGAAGCCA

4 redundant motifs found:
TTGGCTTCGTTA - ATTGGCTTCGTT - GGCTTCGTTA - GCTTCGTTAA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TGTCTTCTCAAA] 35 (89.98)
2 + .TGGCATTGTTAT. 36 (92.17)
2 + .TGGCTTCGTTAA. 48 (100.00)
2 - .TATTTTTCTTAA. 56 (91.45)
3 + .TAGCCCAGTTAA. 27 (93.15)
3 + .AATTTTCGTTAA. 69 (94.06)
4 + .TAGTTTAGTTAG. 48 (94.24)
4 - [AAGCCTTCTCAT] 76 (85.30)
5 - [TATCTTCTTCTC] 86 (88.84)
5 - .TGGGCTCGTTAA. 44 (95.92)
5 - [TAACTCTTTTAA] 35 (88.51)
5 - [TAACTTCTTTTT] 26 (89.59)
6 - .TGGCTTCCTCAA. 44 (95.53)
7 - [TATTTTTTTTTC] 86 (86.98)
7 - .TGACTTCGTCTC. 12 (91.24)
8 + .GAGTTTCGTTTA. 35 (93.88)
8 - [TAATTTTGCCAA] 47 (88.68)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 1 0 1 8| 1 0 1 8
2 4 0 6 0| 5 0 5 0
3 1 0 7 2| 1 0 7 2
4 0 6 1 3| 0 5 1 4
5 1 2 0 7| 1 2 0 7
6 0 1 0 9| 0 1 0 9
7 2 7 0 1| 2 6 0 2
8 0 1 8 1| 0 2 8 0
9 0 1 0 9| 0 0 0 10
10 1 2 0 7| 0 2 0 8
11 8 0 0 2| 8 0 0 2
12 7 1 1 1| 7 1 1 1