Your Weeder Web Results

NEW: Starting a large job on file /tmp/motif_master/92_WEEDER/aiy_400.fa

Organism code: CE

Processing both strands

/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/92_WEEDER/aiy_400.fa CE large S


Searching for motifs of length 6 with 1 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/92_WEEDER/aiy_400.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) GGCTCA 1.53
2) AAAAAT 1.40
3) TTGGCT 1.38
4) AGCCCA 1.28
5) GCTCAA 1.17
6) CTCACG 1.11
7) AAAGCA 1.10
8) ATTGGC 1.07
9) CCCGCT 1.05
10) CCGTGA 1.03

Elapsed time : 0 min. 0 sec.


Searching for motifs of length 8 with 2 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/92_WEEDER/aiy_400.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) GGCTCAAT 2.42
2) ACGTCAGG 1.81
3) AATTGGCT 1.79
4) TATTCATA 1.70
5) ATTGGCTC 1.68
6) CGGCTCAA 1.65
7) GGCTTCGT 1.62
8) CCTGCTCA 1.60
9) ATTGGCTT 1.58
10) CGAGGTCA 1.57

Elapsed time : 0 min. 5 sec.


Searching for motifs of length 10 with 3 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/92_WEEDER/aiy_400.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) TTGGCTTCGT 2.36
2) GCATTGAGCC 2.31
3) ACACGTCACG 2.20
4) AAATTGGCTC 2.11
5) GCCGTAGAAT 2.10
6) GAAGGCATTG 2.09
7) CCTGACATCG 2.04
8) CACGTCATGG 2.03
9) ATTGGCTTCG 1.99
10) ACGAAGTCAA 1.97

Elapsed time : 1 min. 55 sec.


Searching for motifs of length 12 with 4 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/92_WEEDER/aiy_400.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) ATTGGCTTCGTT 3.60
2) CCGATGTGAGAC 3.52
3) TATGAATAGGAG 3.50
4) GAGGAAGCCAAT 3.45
5) GACGAAGTCAAT 3.41
6) TATTGGCTTCGT 3.37
7) GAAGGCATTGAG 3.33
8) TTGGCTTCGTTA 3.30
9) TGGCTTCGTTAA 3.28
10) ATATGAATAGGA 3.27

Elapsed time : 16 min. 18 sec.


Your sequences:

Sequence 1 : >III:5795739..5796138
Sequence 2 : >X:11767378..11767777
Sequence 3 : >III:7833525..7833924
Sequence 4 : >II:10912663..10913062
Sequence 5 : >I:14142052..14142451
Sequence 6 : >X:7118434..7118833
Sequence 7 : >IV:3625632..3626031
Sequence 8 : >X:15292838..15293237


**** MY ADVICE ****


*** Interesting motifs (highest-ranking) seem to be :


GGCTCA
TGAGCC

4 redundant motifs found:
CGGCTCAA - GGCTCAAT - CTCACG - GCTCAA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TACTCA] 16 (85.69)
1 + [TTCTCA] 189 (88.66)
1 + .GGCTCA. 199 (100.00)
1 + [TGATCA] 210 (87.56)
1 + .GGCGCA. 221 (93.07)
1 + [TACTCA] 290 (85.69)
1 - [GTCACA] 360 (85.47)
1 - [TGCACA] 327 (85.58)
1 - [TACTCA] 299 (85.69)
1 - [TGATCA] 210 (87.56)
2 + [GTCGCA] 8 (87.35)
2 + [TTCTCA] 166 (88.66)
2 + [TTCTCA] 253 (88.66)
2 + .TGCTCA. 345 (94.38)
2 + .GGCTCA. 363 (100.00)
2 - .GACTCA. 278 (91.31)
2 - [AGATCA] 105 (86.47)
2 - [TGCACA] 89 (85.58)
2 - [GTGTCA] 18 (85.58)
3 + .GGATCA. 47 (93.18)
3 + [TGTTCA] 331 (85.69)
3 - .GGCTAA. 176 (93.07)
3 - [GGCGAA] 77 (86.14)
3 - .GGGTCA. 68 (91.31)
3 - [GTCTAA] 37 (87.35)
3 - .GGCTCA. 17 (100.00)
4 + .TGCTCA. 66 (94.38)
4 + .GGCGCA. 246 (93.07)
4 + [GGAGCA] 254 (86.25)
4 + [GTCTCC] 326 (85.58)
4 + [GGATAA] 373 (86.25)
4 - [TGCTCC] 254 (85.69)
4 - .GTCTCA. 238 (94.27)
4 - [TTCTCA] 227 (88.66)
4 - [GTCTGA] 60 (85.47)
4 - .GGCTGA. 48 (91.20)
5 + [AGCTCG] 85 (87.56)
5 + .GGCTCA. 95 (100.00)
5 + [GGAGCA] 119 (86.25)
5 + [GGCGAA] 226 (86.14)
5 + .AGCTCA. 324 (93.29)
5 + [TGCTGA] 334 (85.58)
5 - [TTCTCA] 337 (88.66)
5 - .GGCTCG. 198 (94.27)
5 - [TGCACA] 156 (85.58)
5 - [TGCTCC] 119 (85.69)
5 - .GGCTCC. 102 (91.31)
5 - [AGCTAA] 83 (86.36)
5 - [GACTCG] 73 (85.58)
5 - .GGCTCA. 61 (100.00)
5 - .GGATCA. 40 (93.18)
5 - .GGCTAA. 4 (93.07)
6 + [GTTTCA] 157 (85.58)
6 + [TGGTCA] 332 (85.69)
6 - [TACTCA] 258 (85.69)
6 - [GTCTAA] 240 (87.35)
6 - [TGCTCG] 226 (88.66)
7 + .GGCACA. 48 (91.20)
7 + [ATCTCA] 55 (87.56)
7 + .TGCTCA. 68 (94.38)
7 + .AGCTCA. 76 (93.29)
7 + .GGCTCA. 199 (100.00)
7 + [TTCTCA] 347 (88.66)
7 + .GGCTCG. 371 (94.27)
7 - .GTCTCA. 387 (94.27)
7 - [AGCTCG] 375 (87.56)
7 - [ATCTCA] 319 (87.56)
7 - .GGCTCG. 208 (94.27)
7 - [AGCTAA] 175 (86.36)
7 - [GTCTCC] 161 (85.58)
7 - [AGCTCG] 137 (87.56)
8 + [AGATCA] 35 (86.47)
8 + [TGCTAA] 84 (87.46)
8 + [TACTCA] 364 (85.69)
8 - .GGTTCA. 345 (91.31)
8 - [ATCTCA] 239 (87.56)
8 - .GTCTCA. 49 (94.27)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 2 0 24 3| 2 0 24 3
2 1 0 25 3| 1 0 25 3
3 2 25 1 1| 2 25 1 1
4 1 0 2 26| 1 0 2 26
5 2 26 1 0| 2 26 1 0
6 25 1 3 0| 25 1 3 0






GGCTCAAT
ATTGAGCC

4 redundant motifs found:
GCATTGAGCC - CGGCTCAA - GCTCAA - GGCTCA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TACTCAAT] 16 (86.37)
1 + .GGCTCAAT. 199 (100.00)
2 + [TGCTCACT] 345 (86.86)
2 + .GGCTCAAT. 363 (100.00)
2 - [GACTCATT] 276 (85.58)
3 + [TGCTTAAT] 364 (85.15)
3 - [GGCTAATT] 174 (87.65)
3 - .GGCTCAGT. 15 (90.67)
4 + .TGCTCAAA. 66 (91.22)
4 - [GTCTCAAA] 236 (86.65)
5 + [AGCCCAAT] 104 (85.03)
5 + [AGCCCAAT] 200 (85.03)
5 + [AGCTCAAA] 324 (89.77)
5 - [GGCTCGTT] 196 (87.41)
5 - [GACTCGAT] 71 (85.08)
5 - .GGCTCAAT. 59 (100.00)
5 - [GGCTAATT] 2 (87.65)
7 + [GGCACAAA] 48 (86.77)
7 + .TGCTCAAA. 68 (91.22)
7 + [AGCTCAAA] 76 (89.77)
7 + .GGCTCAAT. 199 (100.00)
7 - [GTCTCAAA] 385 (86.65)
7 - [GGCTCGAA] 206 (89.94)
8 + [TGCTAAAT] 84 (88.44)
8 - [GGTTCAAA] 343 (86.43)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 4 1 26 6| 0 0 5 2
2 3 1 31 2| 0 0 7 0
3 1 33 1 2| 0 7 0 0
4 2 3 2 30| 0 0 0 7
5 5 29 1 2| 0 7 0 0
6 31 1 5 0| 7 0 0 0
7 27 3 2 5| 6 0 1 0
8 9 2 2 24| 2 0 0 5






TTGGCTTCGT
ACGAAGCCAA

5 redundant motifs found:
TTGGCTTCGTTA - TATTGGCTTCGT - ATTGGCTTCGTT - ATTGGCTTCG - GGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TTGTCTCTGT] 93 (89.76)
1 + .TTGACTTCAT. 104 (92.95)
1 + [TCGTCTTCTT] 125 (89.22)
1 + .TTGGCTCAAT. 197 (90.33)
1 - [CTGCCTTCTT] 237 (87.18)
1 - .TTGGCTGTGT. 229 (90.03)
2 + .TTGGCTTCGT. 197 (100.00)
2 - .TTGTCTTCGG. 23 (91.99)
3 + .TTTGCTTTTT. 266 (90.50)
3 + [TTTACTTTTT] 273 (86.40)
3 - [TTTTCTTTTT] 250 (87.44)
3 - [GTGGCTCAGT] 15 (86.49)
4 + [TTAGTTTAGT] 197 (87.33)
4 - [TTGTCATTTT] 109 (85.30)
4 - [TTGGCTGACT] 46 (85.21)
5 - [TGTGCTTTTT] 370 (85.01)
5 - [TTTCCTTTTT] 362 (85.67)
5 - .TTATCTTCTT. 239 (90.35)
5 - [TTGGGCTCGT] 197 (86.78)
5 - [TTAACTTCTT] 179 (89.32)
5 - [TTTTTTTCTT] 171 (86.99)
5 - [TTTTCTTTTT] 168 (87.44)
5 - .TGGGCTCCGT. 100 (90.98)
5 - [TTGGCTAATT] 2 (87.54)
6 + .TTTGTTTCTT. 11 (90.05)
6 - [TAGTCTTATT] 263 (86.04)
6 - .TTGGCTTCCT. 197 (94.71)
6 - [TGGGCTTCTG] 143 (88.37)
6 - [TTGTGTTCTT] 70 (89.32)
7 + .TTGGCTCAAT. 197 (90.33)
7 - .TTGACTTCGT. 165 (95.91)
7 - [TTTGCTTTTG] 10 (85.55)
7 - [TTGCTTTTGT] 9 (87.44)
8 + [TTCTCTTCAT] 2 (85.80)
8 - [TTGTTTTTTT] 374 (88.00)
8 - [TGTGTTTCGT] 262 (85.76)
8 - [TTGCCATCTT] 145 (87.18)
8 - [TTGCTTTATT] 133 (86.70)
8 - [TTGTTTTAAT] 96 (86.70)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 2 2 29| 0 0 0 12
2 2 2 3 26| 0 0 1 11
3 3 1 25 4| 1 0 9 2
4 4 3 20 6| 2 0 8 2
5 1 25 2 5| 0 11 0 1
6 2 2 0 29| 0 0 0 12
7 1 6 2 24| 0 3 1 8
8 6 21 1 5| 2 8 0 2
9 5 2 16 10| 3 1 5 3
10 1 0 4 28| 0 0 1 11






ATTGGCTTCGTT
AACGAAGCCAAT

5 redundant motifs found:
TGGCTTCGTTAA - TTGGCTTCGTTA - TATTGGCTTCGT - ATTGGCTTCG - TTGGCTTCGT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .ATTGGCTCAATT. 196 (91.30)
1 - [ACTGACCTCGTT] 33 (85.22)
2 + [AGTGGCATTGTT] 184 (86.25)
2 + .ATTGGCTTCGTT. 196 (100.00)
2 - [ATTTACTGCTTT] 119 (88.69)
2 - .ATTGTCTTCGGT. 22 (91.23)
3 + [TTTTACTTTTTT] 272 (86.68)
3 + [ATGTTCATCGTT] 330 (86.65)
3 - .ATTTTCTTTTTT. 249 (90.55)
4 + [ATTAGTTTAGTT] 196 (88.58)
4 - [ATTTTCCTTGTT] 314 (87.31)
5 + .ATTTGCATATTT. 206 (90.60)
5 - .ATGTGCTTTTTT. 369 (90.02)
5 - .ATTGGGCTCGTT. 196 (90.19)
5 - [TTTAACTTCTTT] 178 (87.12)
5 - [TTTTTCTTTTTT] 167 (86.68)
6 - .ATTGGCTTCCTC. 196 (90.96)
6 - [ATTTGAATCATT] 177 (86.30)
6 - [TTGGGCTTCTGT] 142 (85.83)
6 - [TTTTGCATTTTT] 104 (86.40)
6 - [TTTGTGTTCTTT] 69 (86.05)
7 + .ATTGGCTCAATT. 196 (91.30)
7 - .ATTGACTTCGTC. 164 (91.85)
8 - [TTGTGTTTCGTT] 261 (85.75)
8 - .ATTGCCATCTTT. 144 (90.00)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 29 2 3 6| 11 0 0 0
2 1 2 2 35| 0 0 0 11
3 1 2 6 31| 0 0 1 10
4 4 0 25 11| 0 0 8 3
5 6 3 25 6| 1 1 7 2
6 3 29 3 5| 0 10 1 0
7 6 5 1 28| 2 1 0 8
8 2 6 4 28| 0 2 0 9
9 8 23 2 7| 3 6 0 2
10 7 3 18 12| 2 1 4 4
11 1 1 4 34| 0 0 1 10
12 0 5 2 33| 0 2 0 9





*** Interesting motifs (not highest-ranking) can also be :


TTGGCT
AGCCAA

4 redundant motifs found:
ATTGGCTT - ATTGGCTC - AATTGGCT - ATTGGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .TTGCCT. 5 (93.08)
1 + [TTGTAT] 83 (86.10)
1 + .TTGTCT. 93 (95.59)
1 + .TTGACT. 104 (93.08)
1 + [TCGTCT] 125 (86.46)
1 + .TTGCCT. 158 (93.08)
1 + [TGGGCA] 178 (87.69)
1 + [GTGTCT] 184 (86.01)
1 + .TTGGCT. 197 (100.00)
1 - [GTGTCT] 366 (86.01)
1 - .TTGGCT. 311 (100.00)
1 - [TCTGCT] 245 (85.54)
1 - .TTGGCT. 233 (100.00)
1 - [TTGTGT] 169 (86.10)
1 - [TCGTCT] 58 (86.46)
2 + [TTGACA] 17 (85.49)
2 + .TTGGCT. 197 (100.00)
2 - .TTTTCT. 326 (90.26)
2 - .TTTTCT. 271 (90.26)
2 - .TTTTCT. 209 (90.26)
2 - [TTTACT] 124 (87.75)
2 - [TTAACT] 115 (85.85)
2 - .TTGTCT. 96 (95.59)
2 - [TTTGCA] 83 (87.08)
2 - .TTGTCT. 27 (95.59)
3 + .TTTTCT. 134 (90.26)
3 + .TTGGGT. 213 (90.51)
3 + .TTTGCT. 266 (94.67)
3 + [TTTACT] 273 (87.75)
3 + [TTTGCA] 296 (87.08)
3 + .TTTTCT. 359 (90.26)
3 + [TCTGCT] 362 (85.54)
3 - .TTTTCT. 394 (90.26)
3 - [TTTGAT] 382 (85.18)
3 - [TTTCCT] 301 (87.75)
3 - .TTTTCT. 254 (90.26)
3 - [TTAACT] 183 (85.85)
3 - .TGGGCT. 178 (95.28)
3 - .TTGTCT. 39 (95.59)
3 - .GTGGCT. 19 (90.42)
4 + [TTTGAT] 91 (85.18)
4 + [TTTCCT] 151 (87.75)
4 + [TTTGCA] 218 (87.08)
4 + [TTTGGT] 334 (85.18)
4 - [TTTCCT] 318 (87.75)
4 - [TGTTCT] 312 (85.54)
4 - [TGGGAT] 303 (85.79)
4 - .TTTGCT. 256 (94.67)
4 - [TTGTCA] 113 (88.00)
4 - [TTTGCA] 106 (87.08)
4 - .TTGGAT. 84 (90.51)
4 - .TTGGCT. 50 (100.00)
4 - .TTTTCT. 37 (90.26)
4 - [TTTGAT] 5 (85.18)
5 + .TTAGCT. 83 (92.77)
5 + [TGTGCT] 137 (89.95)
5 + [TTTGCA] 207 (87.08)
5 - [TGTGCT] 374 (89.95)
5 - [TTTCCT] 366 (87.75)
5 - [TGAGCT] 324 (88.05)
5 - .TTTGCT. 317 (94.67)
5 - [TTTCCT] 306 (87.75)
5 - .TTTTCT. 297 (90.26)
5 - [TTAACT] 284 (85.85)
5 - [TTATCT] 243 (88.36)
5 - .TGGGCT. 200 (95.28)
5 - [TTAACT] 192 (85.85)
5 - [TTAACT] 183 (85.85)
5 - .TTTTCT. 172 (90.26)
5 - [TTTGCA] 158 (87.08)
5 - [TTTACT] 148 (87.75)
5 - .TGGGCT. 104 (95.28)
5 - .TTGGCT. 6 (100.00)
6 - [TTATCT] 361 (88.36)
6 - .TTGTCT. 242 (95.59)
6 - [TGTGCT] 228 (89.95)
6 - .TTGGCT. 201 (100.00)
6 - .TGGGCT. 147 (95.28)
6 - [TTTGCA] 109 (87.08)
6 - .TTTTCT. 102 (90.26)
6 - [TCTGCT] 83 (85.54)
6 - [TTGTGT] 74 (86.10)
6 - [TGTTCT] 71 (85.54)
7 + .TTGGCA. 46 (92.41)
7 + [TTACCT] 143 (85.85)
7 + .TTAGCT. 175 (92.77)
7 + .TTGGCT. 197 (100.00)
7 + .TGGGCT. 369 (95.28)
7 - .TTTTCT. 393 (90.26)
7 - [TTTGCA] 270 (87.08)
7 - .TTTTCT. 235 (90.26)
7 - .TTGACT. 169 (93.08)
7 - [TCGTCT] 163 (86.46)
7 - [TGAGCT] 76 (88.05)
7 - [TTTCCT] 38 (87.75)
7 - .TTTGCT. 14 (94.67)
8 + [GTTGCT] 106 (85.09)
8 + [TTTACT] 113 (87.75)
8 + .TTGGCA. 197 (92.41)
8 - [TTTGCA] 392 (87.08)
8 - .TTTTCT. 358 (90.26)
8 - [TTGTGT] 267 (86.10)
8 - [TTGTAT] 257 (86.10)
8 - [TTGCCA] 198 (85.49)
8 - [TTGCCA] 149 (85.49)
8 - [TTAGCA] 84 (85.18)
8 - [GTGTCT] 51 (86.01)
8 - .TCGGCT. 41 (90.87)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 0 1 33| 0 0 1 47
2 0 1 5 28| 0 1 5 42
3 2 0 28 4| 2 0 28 18
4 2 2 25 5| 2 2 25 19
5 1 32 1 0| 1 46 1 0
6 2 0 0 32| 2 0 0 46






AATTGGCT
AGCCAATT

5 redundant motifs found:
AAATTGGCTC - ATTGGCTT - ATTGGCTC - ATTGGC - TTGGCT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATTGGCT. 195 (100.00)
1 - .CATTGGCT. 311 (90.59)
2 + [AATTTGTT] 159 (88.46)
2 + .TATTGGCT. 195 (91.43)
2 + [AATTTGCC] 383 (85.74)
2 - [AAATGACT] 280 (85.17)
2 - .AATTGTCT. 27 (94.05)
3 + [AATTAGAT] 30 (85.41)
3 + [AATTAGCC] 174 (85.74)
3 - [AATTAACT] 183 (87.12)
3 - [ATTTGTCT] 39 (85.48)
4 + [AATTAGTT] 195 (88.46)
4 + [AAATGTCT] 322 (86.25)
4 - .AATTGGAT. 84 (91.26)
5 + [AATTAGCC] 2 (85.74)
5 + .AATTAGCT. 81 (94.15)
5 - [AATTTGTT] 401 (88.46)
6 + [AATTGTTT] 6 (88.36)
6 - [ATTTGTCT] 242 (85.48)
6 - [AAATTGCT] 215 (86.34)
6 - [AATTGCTT] 214 (86.59)
6 - .AATTGGCT. 201 (100.00)
6 - [AATTCGTT] 2 (85.85)
7 + .AATTAGCT. 173 (94.15)
7 + .AATTGGCT. 195 (100.00)
7 - .AATTGACT. 169 (92.97)
7 - [AATTTCCT] 38 (86.44)
8 - [AAATGGTT] 347 (86.50)
8 - [AATTAGTT] 271 (88.46)
8 - [AATTCTCT] 218 (85.60)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 49 4 0 5| 8 1 0 1
2 49 2 2 5| 10 0 0 0
3 6 1 3 48| 0 0 0 10
4 2 2 4 50| 0 0 0 10
5 8 4 38 8| 2 0 8 0
6 6 5 39 8| 1 0 8 1
7 4 41 4 9| 1 9 0 0
8 4 5 2 47| 0 0 0 10






GCTCAA
TTGAGC

3 redundant motifs found:
CGGCTCAA - GGCTCAAT - GGCTCA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .ACTCAA. 17 (94.57)
1 + [TTTCAA] 24 (88.60)
1 + [ATTCAA] 29 (88.07)
1 + [AATCAA] 164 (87.23)
1 + [ACACAA] 169 (86.05)
1 + .TCTCAA. 190 (95.11)
1 + .GCTCAA. 200 (100.00)
1 + [GCGCAA] 222 (89.45)
1 + [ACTCAC] 291 (85.75)
1 - [GCCCGA] 401 (85.93)
1 - .ACTCAA. 298 (94.57)
1 - [TCACAA] 207 (86.58)
2 + .TCTCAA. 167 (95.11)
2 + .TCTCAA. 254 (95.11)
2 + .GCTCAC. 346 (91.17)
2 + .ACTCAA. 350 (94.57)
2 + .GCTCAA. 364 (100.00)
2 - [TCTCGA] 268 (87.54)
2 - [TTTCAA] 176 (88.60)
2 - [TTTCAA] 133 (88.60)
3 + [GCCCGA] 7 (85.93)
3 + .GATCAA. 48 (92.66)
3 + .GCTAAA. 163 (91.17)
3 + .GTTCAA. 232 (93.50)
3 + [ATTCAA] 345 (88.07)
3 + [GCTTAA] 365 (89.15)
3 + .GATCAA. 381 (92.66)
3 - [ACCCAA] 213 (88.07)
3 - [TCTAAA] 203 (86.28)
3 - [ACTAAA] 189 (85.75)
3 - [ATTCAA] 171 (88.07)
3 - [GCTCAG] 16 (89.15)
4 + [AATCAA] 4 (87.23)
4 + [AATCAA] 41 (87.23)
4 + .GCTCAA. 67 (100.00)
4 + [ATTCAA] 287 (88.07)
4 + [TTTCAA] 293 (88.60)
4 - [AATCAA] 266 (87.23)
4 - .TCTCAA. 237 (95.11)
4 - [ACTAAA] 201 (85.75)
4 - [ATTCAA] 172 (88.07)
4 - [TATCAA] 92 (87.76)
5 + [ACTCAC] 24 (85.75)
5 + .GCTCAC. 96 (91.17)
5 + .GCCCAA. 105 (93.50)
5 + .GCCCAA. 201 (93.50)
5 + .GCTCAA. 325 (100.00)
5 - .ACTCAA. 281 (94.57)
5 - [ACTCGA] 72 (87.00)
5 - .GCTCAA. 60 (100.00)
6 + [ACACAA] 74 (86.05)
6 + .GCCCAA. 148 (93.50)
6 + [ATTCAA] 181 (88.07)
6 + .GCACAA. 229 (91.47)
6 - [ACTCAC] 390 (85.75)
6 - [TTTCAA] 347 (88.60)
6 - [TTTCAA] 209 (88.60)
6 - [CCTCAA] 194 (89.87)
7 + .GCACAA. 49 (91.47)
7 + .TCTCAA. 56 (95.11)
7 + .GCTCAA. 69 (100.00)
7 + .GCTCAA. 77 (100.00)
7 + [GCTCTA] 178 (89.22)
7 + .GCTCAA. 200 (100.00)
7 + [ATTCAA] 282 (88.07)
7 + [ATTCAA] 293 (88.07)
7 + [GATCGA] 322 (85.09)
7 + [TCTCAC] 348 (86.28)
7 + .GCTCGA. 372 (92.43)
7 - .TCTCAA. 386 (95.11)
7 - .GCTCGA. 374 (92.43)
7 - .GCCCAA. 338 (93.50)
7 - .GCTCGA. 207 (92.43)
7 - .GTTCAA. 86 (93.50)
7 - [TTTCAA] 25 (88.60)
8 + .GATCAA. 36 (92.66)
8 + .GCTAAA. 85 (91.17)
8 + [ATTCAA] 90 (88.07)
8 + .GTTCAA. 230 (93.50)
8 + [ACACAA] 267 (86.05)
8 + .ACTCAA. 365 (94.57)
8 - .GTTCAA. 344 (93.50)
8 - [TCTCAC] 48 (86.28)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 5 1 32 6| 5 0 28 6
2 3 37 0 4| 3 32 0 4
3 2 4 1 37| 2 4 0 33
4 2 41 0 1| 2 37 0 0
5 40 0 3 1| 36 0 3 0
6 41 2 1 0| 37 2 0 0






ATTGGCTC
GAGCCAAT

5 redundant motifs found:
AAATTGGCTC - ATTGGCTT - AATTGGCT - ATTGGC - TTGGCT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .ATTGCCTC. 4 (93.31)
1 + .TTTGTCTC. 92 (92.01)
1 + [AGTGTCTT] 183 (87.10)
1 + .ATTGGCTC. 196 (100.00)
1 - .ATTGGCTG. 310 (94.30)
1 - [CTTGGCTG] 232 (87.39)
2 + .ATTGGCTT. 196 (96.16)
2 - .ATTTTCTC. 325 (91.91)
2 - [AATGACTC] 279 (87.98)
2 - [TTTTTCTC] 270 (86.87)
2 - [ATTTTATC] 225 (85.62)
2 - .GTTGTCTC. 95 (92.01)
2 - .ATTGTCTT. 26 (93.20)
3 + [AATGGATC] 44 (88.39)
3 + [AGTGGTTC] 237 (86.52)
3 + [TTTTGCTT] 265 (85.99)
3 - [ATTTTCTA] 401 (85.11)
3 - [ATTTGATC] 381 (88.58)
3 - [ATTTTCTT] 253 (88.07)
3 - [TTTGTCTA] 38 (85.21)
3 - [CGTGGCTC] 18 (86.99)
4 + .AATGTCTC. 323 (91.71)
4 - [GTTTGCTC] 255 (89.83)
4 - [ATTGGATT] 83 (89.88)
4 - [GTTGGCTG] 49 (89.26)
4 - [ATTTTCTT] 36 (88.07)
5 + .ATTAGCTC. 82 (94.09)
5 - [TTGGGCTC] 199 (88.60)
5 - [TTGGGCTC] 103 (88.60)
5 - [GTTGGCTA] 5 (88.17)
6 - [TTTGTCTA] 241 (85.21)
6 - [AATTGCTT] 214 (85.69)
6 - .ATTGGCTT. 200 (96.16)
7 + [TTTGGCAC] 45 (87.42)
7 + .ATTAGCTC. 174 (94.09)
7 + .ATTGGCTC. 196 (100.00)
7 + .ATGGGCTC. 368 (93.63)
7 - [ATTGACTT] 168 (89.47)
7 - [TTTTGCTT] 13 (85.99)
8 + [ATTCCCTC] 166 (86.31)
8 + [ATTGGCAA] 196 (85.66)
8 - .ATTTTCTC. 357 (91.91)
8 - [AATGGTTC] 346 (87.30)
8 - [AATATCTC] 240 (85.80)
8 - .ATTCTCTC. 217 (90.04)
8 - .AGTGTCTC. 50 (90.94)
8 - [ATCGGCTT] 40 (86.84)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 26 2 4 4| 15 0 1 1
2 4 0 3 29| 1 0 1 15
3 0 1 3 32| 0 0 1 16
4 3 2 27 4| 2 1 12 2
5 2 2 24 8| 0 1 8 8
6 3 31 0 2| 0 17 0 0
7 2 1 0 33| 0 0 0 17
8 2 25 3 6| 0 13 1 3






GACGAAGTCAAT
ATTGACTTCGTC

2 redundant motifs found:
GAGGAAGCCAAT - ACGAAGTCAA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AACGAGGTCAGT. 33 (90.11)
1 - [GAAGAAGAAGAA] 136 (86.82)
1 - [GAAGAAGAAGAA] 133 (86.82)
1 - [GAAGAAGAAGAA] 130 (86.82)
1 - .GAAGAAGACGAT. 124 (93.29)
1 - [GACGATGATGAT] 118 (85.28)
1 - .GATGAAGTCAAG. 103 (94.32)
1 - [GGAGGAGGCAAT] 4 (85.66)
2 + .ACCGAAGACAAT. 22 (91.75)
2 + [AAAGCAGTAAAT] 119 (88.08)
2 - .AACGAAGCCAAT. 196 (95.94)
2 - [AAAGAAATCAGT] 62 (88.15)
3 + [AAAAAAGAAAAT] 249 (86.45)
5 + .AAAGAAGTTAAA. 178 (90.86)
5 + [AACGAGCCCAAT] 196 (88.61)
5 + [GGAGAAGAAGAT] 235 (85.98)
5 + .GAAGAAGATAAA. 238 (90.39)
6 + [AAAGAACACAAA] 69 (88.91)
6 + .GAGGAAGCCAAT. 196 (93.63)
7 + .GACGAAGTCAAT. 164 (100.00)
7 - [GATGAGGTAAAG] 141 (87.73)
8 + [GATCAAGCCGAT] 36 (87.21)
8 + [AAAGATGGCAAT] 144 (88.80)
8 - [GATGAAGAGAAG] 1 (87.88)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 8 2 15 1| 4 0 5 0
2 21 2 3 0| 8 1 0 0
3 8 11 2 5| 3 4 1 1
4 1 3 21 1| 0 0 9 0
5 23 1 2 0| 9 0 0 0
6 20 0 4 2| 8 0 1 0
7 2 3 18 3| 0 0 9 0
8 6 4 2 14| 3 2 0 4
9 4 17 2 3| 0 7 0 2
10 21 1 3 1| 8 0 1 0
11 21 2 2 1| 8 0 1 0
12 4 0 3 19| 2 0 1 6