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Overview of hsp_guhaExons results from ../runs/hsp_guhaExons_sqlite.db
93 total motifs, 42 were grouped into 14 cliques with 51 singletons Run Overview
| RunID | Program | Fasta (nseq) | Nmotifs |
|---|
| 12224 | ALIGNACE | hsp_guha_5_19.fa (25) | 21 |
| 12225 | WEEDER | hsp_guha_5_19.fa (25) | 12 |
| 12226 | IMPROBIZER | hsp_guha_5_19.fa (25) | 10 |
| 12227 | MEME | hsp_guha_5_19.fa (25) | 10 |
| 12228 | NMICA | hsp_guha_5_19.fa (25) | 4 |
| 12229 | MOBYDICK | hsp_guha_5_19.fa (25) | 7 |
| 12230 | MOTIFSAMPLER | hsp_guha_5_19.fa (25) | 5 |
| 12231 | YMF | hsp_guha_5_19.fa (25) | 10 |
By Clique
clique 0 had 6 motifs (list hsp_guha_5_19.fa 25) gba for all members
Core:
table
| | GAAtgTTCTAGA |  | 24 matches in 11 regions(gba | motif 3 from WEEDER run 12225 (ID 23) | hsp_guha_5_19.fa  list |
| | tTCTAGAa |  | 50 matches in 17 regions(gba | motif 6 from WEEDER run 12225 (ID 26) | hsp_guha_5_19.fa  list |
| | GAAacTTCTAGA |  | 29 matches in 11 regions(gba | motif 9 from WEEDER run 12225 (ID 29) | hsp_guha_5_19.fa  list |
| | TTCtaGAA |  | 64 matches in 17 regions(gba | motif 10 from WEEDER run 12225 (ID 30) | hsp_guha_5_19.fa  list |
| | AAggTTCTAG |  | 29 matches in 14 regions(gba | motif 11 from WEEDER run 12225 (ID 31) | hsp_guha_5_19.fa  list |
| | AGAAcgTTCTaG |  | 21 matches in 9 regions(gba | motif 12 from WEEDER run 12225 (ID 32) | hsp_guha_5_19.fa  list |
clique 1 had 6 motifs (list hsp_guha_5_19.fa 25) gba for all members
Core:
table
| | TCgttgCgaGACCC |  | 17 matches in 7 regions(gba | motif 8 from ALIGNACE run 12224 (ID 7) | hsp_guha_5_19.fa  list |
| | gGaGAGACCC |  | 13 matches in 6 regions(gba | motif 4 from NMICA run 12228 (ID 56) | hsp_guha_5_19.fa  list |
| | GCGAGACCC |  | 9 matches in 3 regions(gba | motif 1 from YMF run 12231 (ID 69) | hsp_guha_5_19.fa  list |
| | CGAGacCCATC |  | 5 matches in 2 regions(gba | motif 7 from YMF run 12231 (ID 75) | hsp_guha_5_19.fa  list |
| | GCgAGACCC |  | 12 matches in 5 regions(gba | motif 8 from YMF run 12231 (ID 76) | hsp_guha_5_19.fa  list |
| | GCGAGACCC |  | 11 matches in 5 regions(gba | motif 9 from YMF run 12231 (ID 77) | hsp_guha_5_19.fa  list |
clique 2 had 4 motifs (list hsp_guha_5_19.fa 25) gba for all members
Core:
table
| | aTTCCcGcaA |  | 29 matches in 7 regions(gba | motif 9 from ALIGNACE run 12224 (ID 8) | hsp_guha_5_19.fa  list |
| | TTCCcGCcAA |  | 16 matches in 2 regions(gba | motif 2 from NMICA run 12228 (ID 54) | hsp_guha_5_19.fa  list |
| | CCCGCC |  | 16 matches in 6 regions(gba | motif 6 from MOBYDICK run 12229 (ID 62) | hsp_guha_5_19.fa  list |
| | ATTCCCGCC |  | 9 matches in 2 regions(gba | motif 4 from YMF run 12231 (ID 72) | hsp_guha_5_19.fa  list |
clique 3 had 3 motifs (list hsp_guha_5_19.fa 25) gba for all members
Core:
table
| | caggCtCCgCCCac |  | 19 matches in 9 regions(gba | motif 14 from ALIGNACE run 12224 (ID 13) | hsp_guha_5_19.fa  list |
| | ggcaCCgtCctCttC |  | 21 matches in 11 regions(gba | motif 19 from ALIGNACE run 12224 (ID 18) | hsp_guha_5_19.fa  list |
| | GGACaCCGACCCCaaCC |  | 2 matches in 2 regions(gba | motif 7 from MEME run 12227 (ID 49) | hsp_guha_5_19.fa  list |
clique 4 had 3 motifs (list hsp_guha_5_19.fa 25) gba for all members
Core:
table
| | aAAttTTcTagA |  | 62 matches in 19 regions(gba | motif 3 from ALIGNACE run 12224 (ID 2) | hsp_guha_5_19.fa  list |
| | cTTCTAGAAg |  | 32 matches in 10 regions(gba | motif 5 from WEEDER run 12225 (ID 25) | hsp_guha_5_19.fa  list |
| | gTTCTAGAAc |  | 36 matches in 11 regions(gba | motif 7 from WEEDER run 12225 (ID 27) | hsp_guha_5_19.fa  list |
clique 5 had 3 motifs (list hsp_guha_5_19.fa 25) gba for all members
Core:
table
| | AtGACGTCAc |  | 16 matches in 6 regions(gba | motif 15 from ALIGNACE run 12224 (ID 14) | hsp_guha_5_19.fa  list |
| | GTCAC |  | 73 matches in 23 regions(gba | motif 3 from MOBYDICK run 12229 (ID 59) | hsp_guha_5_19.fa  list |
| | TGACGTCAt |  | 22 matches in 6 regions(gba | motif 2 from YMF run 12231 (ID 70) | hsp_guha_5_19.fa  list |
clique 6 had 3 motifs (list hsp_guha_5_19.fa 25) gba for all members
Core:
table
| | aGAGACcCAg |  | 24 matches in 14 regions(gba | motif 13 from ALIGNACE run 12224 (ID 12) | hsp_guha_5_19.fa  list |
| | GAGACgCagat |  | 20 matches in 20 regions(gba | motif 4 from MEME run 12227 (ID 46) | hsp_guha_5_19.fa  list |
| | GAGACGCAG |  | 6 matches in 6 regions(gba | motif 5 from YMF run 12231 (ID 73) | hsp_guha_5_19.fa  list |
clique 7 had 2 motifs (list hsp_guha_5_19.fa 25) gba for all members
Core:
table
| | gAaaaattgtGGcGgGa |  | 28 matches in 12 regions(gba | motif 18 from ALIGNACE run 12224 (ID 17) | hsp_guha_5_19.fa  list |
| | GCGGG |  | 26 matches in 11 regions(gba | motif 4 from MOBYDICK run 12229 (ID 60) | hsp_guha_5_19.fa  list |
clique 8 had 2 motifs (list hsp_guha_5_19.fa 25) gba for all members
Core:
table
| | atggGcGGcGCctatct |  | 13 matches in 13 regions(gba | motif 1 from IMPROBIZER run 12226 (ID 33) | hsp_guha_5_19.fa  list |
| | GGGCGGAGC |  | 2 matches in 2 regions(gba | motif 10 from MEME run 12227 (ID 52) | hsp_guha_5_19.fa  list |
clique 9 had 2 motifs (list hsp_guha_5_19.fa 25) gba for all members
Core:
table
| | AGcAGgag |  | 32 matches in 20 regions(gba | motif 1 from MOTIFSAMPLER run 12230 (ID 64) | hsp_guha_5_19.fa  list |
| | aGgaGGag |  | 35 matches in 20 regions(gba | motif 4 from MOTIFSAMPLER run 12230 (ID 68) | hsp_guha_5_19.fa  list |
clique 10 had 2 motifs (list hsp_guha_5_19.fa 25) gba for all members
Core:
table
| | aataacGTCATCta |  | 13 matches in 13 regions(gba | motif 4 from IMPROBIZER run 12226 (ID 36) | hsp_guha_5_19.fa  list |
| | CGTCA |  | 68 matches in 17 regions(gba | motif 1 from MOBYDICK run 12229 (ID 57) | hsp_guha_5_19.fa  list |
clique 11 had 2 motifs (list hsp_guha_5_19.fa 25) gba for all members
Core:
table
| | GGACC |  | 27 matches in 12 regions(gba | motif 7 from MOBYDICK run 12229 (ID 63) | hsp_guha_5_19.fa  list |
| | AGGGACCTC |  | 5 matches in 1 regions(gba | motif 3 from YMF run 12231 (ID 71) | hsp_guha_5_19.fa  list |
clique 12 had 2 motifs (list hsp_guha_5_19.fa 25) gba for all members
Core:
table
| | AGAAcgTTCT |  | 32 matches in 12 regions(gba | motif 2 from WEEDER run 12225 (ID 22) | hsp_guha_5_19.fa  list |
| | GAAcaTTC |  | 90 matches in 18 regions(gba | motif 8 from WEEDER run 12225 (ID 28) | hsp_guha_5_19.fa  list |
clique 13 had 2 motifs (list hsp_guha_5_19.fa 25) gba for all members
Core:
table
| | ACCCaTCGTGG |  | 5 matches in 1 regions(gba | motif 6 from YMF run 12231 (ID 74) | hsp_guha_5_19.fa  list |
| | ACCCaTCGTGG |  | 6 matches in 2 regions(gba | motif 10 from YMF run 12231 (ID 78) | hsp_guha_5_19.fa  list |
Run 12224 was ALIGNACE on hsp_guha_5_19.fa (25)
| | aAAAAataaaaaAA |  | 90 matches in 23 regions(gba | motif 1 from ALIGNACE run 12224 (ID 0) | hsp_guha_5_19.fa  list |
| | aaAatTTccaaaAAA |  | 81 matches in 24 regions(gba | motif 2 from ALIGNACE run 12224 (ID 1) | hsp_guha_5_19.fa  list |
| | aAAttTTcTagA | | 62 matches in 19 regions(gba | motif 3 from ALIGNACE run 12224 (ID 2) | hsp_guha_5_19.fa list |
| | AaaaAAAaAAA |  | 51 matches in 22 regions(gba | motif 4 from ALIGNACE run 12224 (ID 3) | hsp_guha_5_19.fa  list |
| | AAAAtTTgaA |  | 68 matches in 20 regions(gba | motif 5 from ALIGNACE run 12224 (ID 4) | hsp_guha_5_19.fa  list |
| | TTtgAAAAAa |  | 44 matches in 19 regions(gba | motif 6 from ALIGNACE run 12224 (ID 5) | hsp_guha_5_19.fa  list |
| | TttgAatTcCCggcAAA |  | 26 matches in 8 regions(gba | motif 7 from ALIGNACE run 12224 (ID 6) | hsp_guha_5_19.fa  list |
| | TCgttgCgaGACCC | | 17 matches in 7 regions(gba | motif 8 from ALIGNACE run 12224 (ID 7) | hsp_guha_5_19.fa list |
| | aTTCCcGcaA | | 29 matches in 7 regions(gba | motif 9 from ALIGNACE run 12224 (ID 8) | hsp_guha_5_19.fa list |
| | aaAAAAattTTt |  | 42 matches in 19 regions(gba | motif 10 from ALIGNACE run 12224 (ID 9) | hsp_guha_5_19.fa  list |
| | CgGgAATTCAAA |  | 22 matches in 9 regions(gba | motif 11 from ALIGNACE run 12224 (ID 10) | hsp_guha_5_19.fa  list |
| | TGGGtgtcGCC |  | 19 matches in 12 regions(gba | motif 12 from ALIGNACE run 12224 (ID 11) | hsp_guha_5_19.fa  list |
| | aGAGACcCAg | | 24 matches in 14 regions(gba | motif 13 from ALIGNACE run 12224 (ID 12) | hsp_guha_5_19.fa list |
| | caggCtCCgCCCac | | 19 matches in 9 regions(gba | motif 14 from ALIGNACE run 12224 (ID 13) | hsp_guha_5_19.fa list |
| | AtGACGTCAc | | 16 matches in 6 regions(gba | motif 15 from ALIGNACE run 12224 (ID 14) | hsp_guha_5_19.fa list |
| | gAgAaAaaggGaGag |  | 29 matches in 15 regions(gba | motif 16 from ALIGNACE run 12224 (ID 15) | hsp_guha_5_19.fa  list |
| | CaaaAAaAAttTGtatTcc |  | 25 matches in 11 regions(gba | motif 17 from ALIGNACE run 12224 (ID 16) | hsp_guha_5_19.fa  list |
| | gAaaaattgtGGcGgGa | | 28 matches in 12 regions(gba | motif 18 from ALIGNACE run 12224 (ID 17) | hsp_guha_5_19.fa list |
| | ggcaCCgtCctCttC | | 21 matches in 11 regions(gba | motif 19 from ALIGNACE run 12224 (ID 18) | hsp_guha_5_19.fa list |
| | CtGttCtccGaGgtccCTgaAA |  | 13 matches in 6 regions(gba | motif 20 from ALIGNACE run 12224 (ID 19) | hsp_guha_5_19.fa  list |
| | GAAaaTTctaG |  | 29 matches in 12 regions(gba | motif 21 from ALIGNACE run 12224 (ID 20) | hsp_guha_5_19.fa  list |
Run 12225 was WEEDER on hsp_guha_5_19.fa (25)
| | GAAtaTTC |  | 92 matches in 18 regions(gba | motif 1 from WEEDER run 12225 (ID 21) | hsp_guha_5_19.fa  list |
| | AGAAcgTTCT | | 32 matches in 12 regions(gba | motif 2 from WEEDER run 12225 (ID 22) | hsp_guha_5_19.fa list |
| | GAAtgTTCTAGA | | 24 matches in 11 regions(gba | motif 3 from WEEDER run 12225 (ID 23) | hsp_guha_5_19.fa list |
| | AGGCGCCT |  | 12 matches in 5 regions(gba | motif 4 from WEEDER run 12225 (ID 24) | hsp_guha_5_19.fa  list |
| | cTTCTAGAAg | | 32 matches in 10 regions(gba | motif 5 from WEEDER run 12225 (ID 25) | hsp_guha_5_19.fa list |
| | tTCTAGAa | | 50 matches in 17 regions(gba | motif 6 from WEEDER run 12225 (ID 26) | hsp_guha_5_19.fa list |
| | gTTCTAGAAc | | 36 matches in 11 regions(gba | motif 7 from WEEDER run 12225 (ID 27) | hsp_guha_5_19.fa list |
| | GAAcaTTC | | 90 matches in 18 regions(gba | motif 8 from WEEDER run 12225 (ID 28) | hsp_guha_5_19.fa list |
| | GAAacTTCTAGA | | 29 matches in 11 regions(gba | motif 9 from WEEDER run 12225 (ID 29) | hsp_guha_5_19.fa list |
| | TTCtaGAA | | 64 matches in 17 regions(gba | motif 10 from WEEDER run 12225 (ID 30) | hsp_guha_5_19.fa list |
| | AAggTTCTAG | | 29 matches in 14 regions(gba | motif 11 from WEEDER run 12225 (ID 31) | hsp_guha_5_19.fa list |
| | AGAAcgTTCTaG | | 21 matches in 9 regions(gba | motif 12 from WEEDER run 12225 (ID 32) | hsp_guha_5_19.fa list |
Run 12226 was IMPROBIZER on hsp_guha_5_19.fa (25)
| | atggGcGGcGCctatct | | 13 matches in 13 regions(gba | motif 1 from IMPROBIZER run 12226 (ID 33) | hsp_guha_5_19.fa list |
| | aattttGcGTCaCaa |  | 14 matches in 14 regions(gba | motif 2 from IMPROBIZER run 12226 (ID 34) | hsp_guha_5_19.fa  list |
| | atCTaGaAGat |  | 16 matches in 16 regions(gba | motif 3 from IMPROBIZER run 12226 (ID 35) | hsp_guha_5_19.fa  list |
| | aataacGTCATCta | | 13 matches in 13 regions(gba | motif 4 from IMPROBIZER run 12226 (ID 36) | hsp_guha_5_19.fa list |
| | tgggAGGtG |  | 14 matches in 14 regions(gba | motif 5 from IMPROBIZER run 12226 (ID 37) | hsp_guha_5_19.fa  list |
| | aGTAtAaAat |  | 15 matches in 15 regions(gba | motif 6 from IMPROBIZER run 12226 (ID 38) | hsp_guha_5_19.fa  list |
| | aaGCTGTA |  | 12 matches in 12 regions(gba | motif 7 from IMPROBIZER run 12226 (ID 39) | hsp_guha_5_19.fa  list |
| | aGTgACA |  | 12 matches in 12 regions(gba | motif 8 from IMPROBIZER run 12226 (ID 40) | hsp_guha_5_19.fa  list |
| | ttGGgTgTct |  | 12 matches in 12 regions(gba | motif 9 from IMPROBIZER run 12226 (ID 41) | hsp_guha_5_19.fa  list |
| | atATtcCAG |  | 13 matches in 13 regions(gba | motif 10 from IMPROBIZER run 12226 (ID 42) | hsp_guha_5_19.fa  list |
Run 12227 was MEME on hsp_guha_5_19.fa (25)
| | tTtTcttgaactttttttTtTTcttTtt |  | 25 matches in 25 regions(gba | motif 1 from MEME run 12227 (ID 43) | hsp_guha_5_19.fa  list |
| | attTtcgAgAAaaTTccaga |  | 25 matches in 25 regions(gba | motif 2 from MEME run 12227 (ID 44) | hsp_guha_5_19.fa  list |
| | ccttgcatagacccgtCccacCCccacccatCatctcgagacccgca |  | 8 matches in 8 regions(gba | motif 3 from MEME run 12227 (ID 45) | hsp_guha_5_19.fa  list |
| | GAGACgCagat | | 20 matches in 20 regions(gba | motif 4 from MEME run 12227 (ID 46) | hsp_guha_5_19.fa list |
| | CaatGgCtGCgaCaAAaAtg |  | 7 matches in 7 regions(gba | motif 5 from MEME run 12227 (ID 47) | hsp_guha_5_19.fa  list |
| | cAtTTTGAAAAataAaaAaaa |  | 16 matches in 16 regions(gba | motif 6 from MEME run 12227 (ID 48) | hsp_guha_5_19.fa  list |
| | GGACaCCGACCCCaaCC | | 2 matches in 2 regions(gba | motif 7 from MEME run 12227 (ID 49) | hsp_guha_5_19.fa list |
| | agGGatGaGcagCtG |  | 8 matches in 8 regions(gba | motif 8 from MEME run 12227 (ID 50) | hsp_guha_5_19.fa  list |
| | AGAcaCgCCgttTTccgTcGTcTTTcggtG |  | 3 matches in 3 regions(gba | motif 9 from MEME run 12227 (ID 51) | hsp_guha_5_19.fa  list |
| | GGGCGGAGC | | 2 matches in 2 regions(gba | motif 10 from MEME run 12227 (ID 52) | hsp_guha_5_19.fa list |
Run 12228 was NMICA on hsp_guha_5_19.fa (25)
| | tcTTCtAGAA |  | 24 matches in 11 regions(gba | motif 1 from NMICA run 12228 (ID 53) | hsp_guha_5_19.fa  list |
| | TTCCcGCcAA | | 16 matches in 2 regions(gba | motif 2 from NMICA run 12228 (ID 54) | hsp_guha_5_19.fa list |
| | TTtcgagAAA |  | 62 matches in 20 regions(gba | motif 3 from NMICA run 12228 (ID 55) | hsp_guha_5_19.fa  list |
| | gGaGAGACCC | | 13 matches in 6 regions(gba | motif 4 from NMICA run 12228 (ID 56) | hsp_guha_5_19.fa list |
Run 12229 was MOBYDICK on hsp_guha_5_19.fa (25)
| | CGTCA | | 68 matches in 17 regions(gba | motif 1 from MOBYDICK run 12229 (ID 57) | hsp_guha_5_19.fa list |
| | CTAAC |  | 40 matches in 17 regions(gba | motif 2 from MOBYDICK run 12229 (ID 58) | hsp_guha_5_19.fa  list |
| | GTCAC | | 73 matches in 23 regions(gba | motif 3 from MOBYDICK run 12229 (ID 59) | hsp_guha_5_19.fa list |
| | GCGGG | | 26 matches in 11 regions(gba | motif 4 from MOBYDICK run 12229 (ID 60) | hsp_guha_5_19.fa list |
| | CCAGC |  | 30 matches in 15 regions(gba | motif 5 from MOBYDICK run 12229 (ID 61) | hsp_guha_5_19.fa  list |
| | CCCGCC | | 16 matches in 6 regions(gba | motif 6 from MOBYDICK run 12229 (ID 62) | hsp_guha_5_19.fa list |
| | GGACC | | 27 matches in 12 regions(gba | motif 7 from MOBYDICK run 12229 (ID 63) | hsp_guha_5_19.fa list |
Run 12230 was MOTIFSAMPLER on hsp_guha_5_19.fa (25)
| | AGcAGgag | | 32 matches in 20 regions(gba | motif 1 from MOTIFSAMPLER run 12230 (ID 64) | hsp_guha_5_19.fa list |
| | GgGaGgcg |  | 38 matches in 19 regions(gba | motif 2 from MOTIFSAMPLER run 12230 (ID 65) | hsp_guha_5_19.fa  list |
| | tatATATA |  | 38 matches in 21 regions(gba | motif 3 from MOTIFSAMPLER run 12230 (ID 66) | hsp_guha_5_19.fa  list |
| | agaGacgC |  | 39 matches in 21 regions(gba | motif 4 from MOTIFSAMPLER run 12230 (ID 67) | hsp_guha_5_19.fa  list |
| | aGgaGGag | | 35 matches in 20 regions(gba | motif 4 from MOTIFSAMPLER run 12230 (ID 68) | hsp_guha_5_19.fa list |
Run 12231 was YMF on hsp_guha_5_19.fa (25)
| | GCGAGACCC | | 9 matches in 3 regions(gba | motif 1 from YMF run 12231 (ID 69) | hsp_guha_5_19.fa list |
| | TGACGTCAt | | 22 matches in 6 regions(gba | motif 2 from YMF run 12231 (ID 70) | hsp_guha_5_19.fa list |
| | AGGGACCTC | | 5 matches in 1 regions(gba | motif 3 from YMF run 12231 (ID 71) | hsp_guha_5_19.fa list |
| | ATTCCCGCC | | 9 matches in 2 regions(gba | motif 4 from YMF run 12231 (ID 72) | hsp_guha_5_19.fa list |
| | GAGACGCAG | | 6 matches in 6 regions(gba | motif 5 from YMF run 12231 (ID 73) | hsp_guha_5_19.fa list |
| | ACCCaTCGTGG | | 5 matches in 1 regions(gba | motif 6 from YMF run 12231 (ID 74) | hsp_guha_5_19.fa list |
| | CGAGacCCATC | | 5 matches in 2 regions(gba | motif 7 from YMF run 12231 (ID 75) | hsp_guha_5_19.fa list |
| | GCgAGACCC | | 12 matches in 5 regions(gba | motif 8 from YMF run 12231 (ID 76) | hsp_guha_5_19.fa list |
| | GCGAGACCC | | 11 matches in 5 regions(gba | motif 9 from YMF run 12231 (ID 77) | hsp_guha_5_19.fa list |
| | ACCCaTCGTGG | | 6 matches in 2 regions(gba | motif 10 from YMF run 12231 (ID 78) | hsp_guha_5_19.fa list |