MCMR results

Overview of aiy2 results from ../runs/aiy2_100_sqlite.db

76 total motifs, 15 were grouped into 6 cliques with 61 singletons

Run Overview

RunID	Program	Fasta (nseq)	Nmotifs
61	ALIGNACE	aiy_100.fa (8)	6
62	WEEDER	aiy_100.fa (8)	19
63	IMPROBIZER	aiy_100.fa (8)	10
64	MEME	aiy_100.fa (8)	10
65	NMICA	aiy_100.fa (8)	8
66	MOBYDICK	aiy_100.fa (8)	2
67	MOTIFSAMPLER	aiy_100.fa (8)	5
68	YMF	aiy_100.fa (8)	10

By Clique

clique 0 had 4 motifs (list aiy_100.fa 8) gba for all members

Core: table

ATTgGcttaaTT	11 matches in 8 regions(gba	motif 1 from ALIGNACE run 61 (ID 0)	aiy_100.fa list
ATTgGcttagTT	13 matches in 8 regions(gba	motif 4 from WEEDER run 62 (ID 9)	aiy_100.fa list
TTggcttagTTa	12 matches in 8 regions(gba	motif 8 from WEEDER run 62 (ID 13)	aiy_100.fa list
aATTgGcttagTTa	8 matches in 8 regions(gba	motif 1 from MEME run 64 (ID 35)	aiy_100.fa list

clique 1 had 3 motifs (list aiy_100.fa 8) gba for all members

Core: table

aaaTtGGCttagT	10 matches in 7 regions(gba	motif 2 from ALIGNACE run 61 (ID 1)	aiy_100.fa list
TTGgCT	13 matches in 7 regions(gba	motif 5 from WEEDER run 62 (ID 10)	aiy_100.fa list
aaTTggCT	10 matches in 6 regions(gba	motif 17 from WEEDER run 62 (ID 22)	aiy_100.fa list

clique 2 had 2 motifs (list aiy_100.fa 8) gba for all members

Core: table

	AtTgGcTtcg		13 matches in 7 regions(gba	motif 7 from WEEDER run 62 (ID 12)	aiy_100.fa list
	aATTgGcttagT		13 matches in 7 regions(gba	motif 12 from WEEDER run 62 (ID 17)	aiy_100.fa list

clique 3 had 2 motifs (list aiy_100.fa 8) gba for all members

Core: table

	GCcaAtTT		18 matches in 7 regions(gba	motif 14 from WEEDER run 62 (ID 19)	aiy_100.fa list
	GCccAaTT		10 matches in 6 regions(gba	motif 2 from MOTIFSAMPLER run 67 (ID 56)	aiy_100.fa list

clique 4 had 2 motifs (list aiy_100.fa 8) gba for all members

Core: table

	AAATTGgcTc		11 matches in 6 regions(gba	motif 11 from WEEDER run 62 (ID 16)	aiy_100.fa list
	AaTTggcTca		10 matches in 6 regions(gba	motif 15 from WEEDER run 62 (ID 20)	aiy_100.fa list

clique 5 had 2 motifs (list aiy_100.fa 8) gba for all members

Core: table

	GttTcgTTAA		11 matches in 7 regions(gba	motif 18 from WEEDER run 62 (ID 23)	aiy_100.fa list
	tagctTcgTtaa		10 matches in 7 regions(gba	motif 19 from WEEDER run 62 (ID 24)	aiy_100.fa list

Run 61 was ALIGNACE on aiy_100.fa (8)

ATTgGcttaaTT	11 matches in 8 regions(gba	motif 1 from ALIGNACE run 61 (ID 0)	aiy_100.fa list
aaaTtGGCttagT	10 matches in 7 regions(gba	motif 2 from ALIGNACE run 61 (ID 1)	aiy_100.fa list
AcgAAgcCacTtA	7 matches in 5 regions(gba	motif 3 from ALIGNACE run 61 (ID 2)	aiy_100.fa list
tgAGccaAtTT	11 matches in 7 regions(gba	motif 4 from ALIGNACE run 61 (ID 3)	aiy_100.fa list
AatgaGccaAtttaaa	14 matches in 8 regions(gba	motif 5 from ALIGNACE run 61 (ID 4)	aiy_100.fa list
gAaaAaatcaAattaaaaaA	10 matches in 8 regions(gba	motif 6 from ALIGNACE run 61 (ID 5)	aiy_100.fa list

Run 62 was WEEDER on aiy_100.fa (8)

ATTgGC	13 matches in 7 regions(gba	motif 1 from WEEDER run 62 (ID 6)	aiy_100.fa list
AATTgGCT	11 matches in 7 regions(gba	motif 2 from WEEDER run 62 (ID 7)	aiy_100.fa list
TTggcTtcgT	12 matches in 7 regions(gba	motif 3 from WEEDER run 62 (ID 8)	aiy_100.fa list
ATTgGcttagTT	13 matches in 8 regions(gba	motif 4 from WEEDER run 62 (ID 9)	aiy_100.fa list
TTGgCT	13 matches in 7 regions(gba	motif 5 from WEEDER run 62 (ID 10)	aiy_100.fa list
ATTggCTc	11 matches in 6 regions(gba	motif 6 from WEEDER run 62 (ID 11)	aiy_100.fa list
AtTgGcTtcg	13 matches in 7 regions(gba	motif 7 from WEEDER run 62 (ID 12)	aiy_100.fa list
TTggcttagTTa	12 matches in 8 regions(gba	motif 8 from WEEDER run 62 (ID 13)	aiy_100.fa list
aGCCaA	10 matches in 7 regions(gba	motif 9 from WEEDER run 62 (ID 14)	aiy_100.fa list
GgcTTcGT	11 matches in 7 regions(gba	motif 10 from WEEDER run 62 (ID 15)	aiy_100.fa list
AAATTGgcTc	11 matches in 6 regions(gba	motif 11 from WEEDER run 62 (ID 16)	aiy_100.fa list
aATTgGcttagT	13 matches in 7 regions(gba	motif 12 from WEEDER run 62 (ID 17)	aiy_100.fa list
TcgTTa	14 matches in 8 regions(gba	motif 13 from WEEDER run 62 (ID 18)	aiy_100.fa list
GCcaAtTT	18 matches in 7 regions(gba	motif 14 from WEEDER run 62 (ID 19)	aiy_100.fa list
AaTTggcTca	10 matches in 6 regions(gba	motif 15 from WEEDER run 62 (ID 20)	aiy_100.fa list
cTgGGC	6 matches in 4 regions(gba	motif 16 from WEEDER run 62 (ID 21)	aiy_100.fa list
aaTTggCT	10 matches in 6 regions(gba	motif 17 from WEEDER run 62 (ID 22)	aiy_100.fa list
GttTcgTTAA	11 matches in 7 regions(gba	motif 18 from WEEDER run 62 (ID 23)	aiy_100.fa list
tagctTcgTtaa	10 matches in 7 regions(gba	motif 19 from WEEDER run 62 (ID 24)	aiy_100.fa list

Run 63 was IMPROBIZER on aiy_100.fa (8)

attggcttCGTcaat	7 matches in 7 regions(gba	motif 1 from IMPROBIZER run 63 (ID 25)	aiy_100.fa list
tgtCtAgTtt	8 matches in 8 regions(gba	motif 2 from IMPROBIZER run 63 (ID 26)	aiy_100.fa list
CacaaCc	8 matches in 8 regions(gba	motif 3 from IMPROBIZER run 63 (ID 27)	aiy_100.fa list
tTttCaCa	8 matches in 8 regions(gba	motif 4 from IMPROBIZER run 63 (ID 28)	aiy_100.fa list
tgttAATTa	8 matches in 8 regions(gba	motif 5 from IMPROBIZER run 63 (ID 29)	aiy_100.fa list
tTgcatTTtt	8 matches in 8 regions(gba	motif 6 from IMPROBIZER run 63 (ID 30)	aiy_100.fa list
tTcTCat	8 matches in 8 regions(gba	motif 7 from IMPROBIZER run 63 (ID 31)	aiy_100.fa list
aTTctTt	7 matches in 7 regions(gba	motif 8 from IMPROBIZER run 63 (ID 32)	aiy_100.fa list
TTcgaac	7 matches in 7 regions(gba	motif 9 from IMPROBIZER run 63 (ID 33)	aiy_100.fa list
tTAtctc	5 matches in 5 regions(gba	motif 10 from IMPROBIZER run 63 (ID 34)	aiy_100.fa list

Run 64 was MEME on aiy_100.fa (8)

aATTgGcttagTTa	8 matches in 8 regions(gba	motif 1 from MEME run 64 (ID 35)	aiy_100.fa list
aggGAgaaGA	4 matches in 4 regions(gba	motif 2 from MEME run 64 (ID 36)	aiy_100.fa list
cACGGCGc	2 matches in 2 regions(gba	motif 3 from MEME run 64 (ID 37)	aiy_100.fa list
TCCGaGAG	2 matches in 2 regions(gba	motif 4 from MEME run 64 (ID 38)	aiy_100.fa list
CtGGGcAG	2 matches in 2 regions(gba	motif 5 from MEME run 64 (ID 39)	aiy_100.fa list
GCCTAaTC	2 matches in 2 regions(gba	motif 6 from MEME run 64 (ID 40)	aiy_100.fa list
GcCTTCTC	2 matches in 2 regions(gba	motif 7 from MEME run 64 (ID 41)	aiy_100.fa list
CACACatC	2 matches in 2 regions(gba	motif 8 from MEME run 64 (ID 42)	aiy_100.fa list
GAaCTtGC	2 matches in 2 regions(gba	motif 9 from MEME run 64 (ID 43)	aiy_100.fa list
GTGaCATT	2 matches in 2 regions(gba	motif 10 from MEME run 64 (ID 44)	aiy_100.fa list

Run 65 was NMICA on aiy_100.fa (8)

TAGTTaGTGa	2 matches in 2 regions(gba	motif 1 from NMICA run 65 (ID 45)	aiy_100.fa list
AGGGAGACGA	1 matches in 1 regions(gba	motif 2 from NMICA run 65 (ID 46)	aiy_100.fa list
cacACCcCGa	2 matches in 2 regions(gba	motif 3 from NMICA run 65 (ID 47)	aiy_100.fa list
TTcCaacAtt	3 matches in 2 regions(gba	motif 4 from NMICA run 65 (ID 48)	aiy_100.fa list
CCGCGAGCAC	1 matches in 1 regions(gba	motif 5 from NMICA run 65 (ID 49)	aiy_100.fa list
AAATTGGCTC	2 matches in 2 regions(gba	motif 6 from NMICA run 65 (ID 50)	aiy_100.fa list
GACATGATAA	1 matches in 1 regions(gba	motif 7 from NMICA run 65 (ID 51)	aiy_100.fa list
gaCtTTgaga	5 matches in 5 regions(gba	motif 8 from NMICA run 65 (ID 52)	aiy_100.fa list

Run 66 was MOBYDICK on aiy_100.fa (8)

	AAATGT		3 matches in 3 regions(gba	motif 1 from MOBYDICK run 66 (ID 53)	aiy_100.fa list
	AGAAG		6 matches in 4 regions(gba	motif 2 from MOBYDICK run 66 (ID 54)	aiy_100.fa list

Run 67 was MOTIFSAMPLER on aiy_100.fa (8)

tgaGCccA	10 matches in 6 regions(gba	motif 1 from MOTIFSAMPLER run 67 (ID 55)	aiy_100.fa list
GCccAaTT	10 matches in 6 regions(gba	motif 2 from MOTIFSAMPLER run 67 (ID 56)	aiy_100.fa list
ccacgtCG	10 matches in 6 regions(gba	motif 3 from MOTIFSAMPLER run 67 (ID 57)	aiy_100.fa list
AAtTaggc	15 matches in 6 regions(gba	motif 4 from MOTIFSAMPLER run 67 (ID 58)	aiy_100.fa list
TtcatGgC	7 matches in 6 regions(gba	motif 4 from MOTIFSAMPLER run 67 (ID 59)	aiy_100.fa list

Run 68 was YMF on aiy_100.fa (8)

CTTCtTCTCCC	2 matches in 2 regions(gba	motif 1 from YMF run 68 (ID 60)	aiy_100.fa list
ACGAacCCAAT	2 matches in 2 regions(gba	motif 2 from YMF run 68 (ID 61)	aiy_100.fa list
ATTCaaGcCGG	2 matches in 1 regions(gba	motif 3 from YMF run 68 (ID 62)	aiy_100.fa list
ACCccGCTA	2 matches in 2 regions(gba	motif 4 from YMF run 68 (ID 63)	aiy_100.fa list
AcACACaGCC	2 matches in 1 regions(gba	motif 5 from YMF run 68 (ID 64)	aiy_100.fa list
CAAGaCTTGA	2 matches in 1 regions(gba	motif 6 from YMF run 68 (ID 65)	aiy_100.fa list
TAGtacAGtTA	3 matches in 3 regions(gba	motif 7 from YMF run 68 (ID 66)	aiy_100.fa list
ATTGAGCCA	2 matches in 2 regions(gba	motif 8 from YMF run 68 (ID 67)	aiy_100.fa list
GCaACATGA	2 matches in 2 regions(gba	motif 9 from YMF run 68 (ID 68)	aiy_100.fa list
ACAAatcCACT	2 matches in 2 regions(gba	motif 10 from YMF run 68 (ID 69)	aiy_100.fa list