Your Weeder Web Results
NEW: Starting a large job on file /tmp/motif_master/12015_WEEDER/mec3_top20_u2t_2_19.fa
Organism code: CE
Processing both strands
/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/12015_WEEDER/mec3_top20_u2t_2_19.fa CE large S
Searching for motifs of length 6 with 1 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12015_WEEDER/mec3_top20_u2t_2_19.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) ATTTTT 1.50
2) ATGCAT 1.31
3) TTATAA 0.73
4) TCATGA 0.64
5) TCTAGA 0.62
6) CATCTT 0.59
7) GCACTA 0.58
8) CATTCG 0.57
9) GAGCTC 0.57
10) AGATGA 0.55
Elapsed time : 0 min. 2 sec.
Searching for motifs of length 8 with 2 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12015_WEEDER/mec3_top20_u2t_2_19.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) AATGCATT 1.68
2) AGAGCTCT 1.22
3) CATGCATT 1.14
4) ATCATGAT 1.12
5) TCCTAGGA 1.08
6) TACGCGTA 1.07
7) ATGCATTT 1.06
8) ATCTAGAT 1.04
9) TGTGTAGC 0.99
10) GTCATGAC 0.94
Elapsed time : 0 min. 38 sec.
Searching for motifs of length 10 with 3 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12015_WEEDER/mec3_top20_u2t_2_19.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) ATCCTAAACA 1.41
2) ATGCTAAACA 1.26
3) CATGCATTTG 1.23
4) TCATGCATTT 1.17
5) CTCATGCATT 1.14
6) ATACCCGAGC 1.09
7) ATGCATTTGT 1.09
8) ACAAATTCAT 1.08
9) CAGAGCTCTG 1.04
10) TTCCTAGGAA 0.98
Elapsed time : 14 min. 37 sec.
Searching for motifs of length 12 with 4 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12015_WEEDER/mec3_top20_u2t_2_19.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) GATGAGGCAGTA 2.43
2) ATCCTAAACAAC 2.25
3) AAATGCATGAGA 2.25
4) AGATGAGGCAGT 2.25
5) TGTTTAGGATCA 2.24
6) AGATGAAGCAGT 2.24
7) ATACCCGAGCAA 2.17
8) ATCCGAAACAAC 2.16
9) GAAATGGAAACA 2.15
10) TATAGTGCATGA 2.14
Elapsed time : -8 min. -16 sec.
Your sequences:
Sequence 1 : >ID1926163_Y48G8AL.8a_u2k_truncated
Sequence 2 : >ID1931660_C06A8.3_u2k_truncated
Sequence 3 : >ID1931831_F14E5.4_u2k_truncated
Sequence 4 : >ID1933993_C44B11.3_u2k_truncated
Sequence 5 : >ID1935100_F37C12.12_u2k_truncated
Sequence 6 : >ID1936363_ZC482.5_u2k_truncated
Sequence 7 : >ID1938322_F57H12.2_u2k_truncated
Sequence 8 : >ID1938324_F57H12.7_u2k_truncated
Sequence 9 : >ID1938498_F42A9.9_u2k_truncated
Sequence 10 : >ID1939022_F01D4.6a_u2k_truncated
Sequence 11 : >ID1939832_Y45F10D.12_u2k_truncated
Sequence 12 : >ID1942531_F20D6.5_u2k_truncated
Sequence 13 : >ID1943041_C50H2.3_u2k_truncated
Sequence 14 : >ID1943871_F15B9.1_u2k_truncated
Sequence 15 : >ID1946256_T07D1.3_u2k_truncated
Sequence 16 : >ID1946591_C52B9.9_u2k_truncated
Sequence 17 : >ID1946593_C52B9.6_u2k_truncated
Sequence 18 : >ID1947327_ZK154.3_u2k_truncated
Sequence 19 : >ID1948027_C03A3.3_u2k_truncated
Sequence 20 : >ID1948964_T01C8.7_u2k_truncated
**** MY ADVICE ****
*** Interesting motifs (highest-ranking) seem to be :
AATGCATT
AATGCATT
3 redundant motifs found:
ATGCATTT - CATGCATT - ATGCAT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATACATT. 196 (93.78)
1 + .AATTAATT. 463 (90.39)
1 - .AATTAATT. 463 (90.39)
1 - .AATGTATT. 196 (93.78)
2 + [ATTACATT] 178 (85.04)
2 + [ATTTCATT] 363 (86.45)
2 + [AATGAAAT] 611 (86.45)
2 + [ATTTCATT] 1137 (86.45)
2 + [AAATCATT] 1305 (85.79)
2 + [AATTTATT] 1714 (88.97)
2 - [AATAAATT] 1714 (88.97)
2 - [AATGATTT] 1305 (85.79)
2 - [AATGAAAT] 1137 (86.45)
2 - [ATTTCATT] 611 (86.45)
2 - [AATGAAAT] 363 (86.45)
2 - [AATGTAAT] 178 (85.04)
3 + [CATGCATT] 328 (89.42)
3 + [AAATCATT] 434 (85.79)
3 + [ATTTCATT] 474 (86.45)
3 - [AATGAAAT] 474 (86.45)
3 - [AATGATTT] 434 (85.79)
3 - [AATGCATG] 328 (89.42)
4 + [AATTCATA] 333 (85.52)
4 + .AATACATT. 493 (93.78)
4 + .AATGCATT. 575 (100.00)
4 + .AATTAATT. 816 (90.39)
4 - .AATTAATT. 816 (90.39)
4 - .AATGCATT. 575 (100.00)
4 - .AATGTATT. 493 (93.78)
4 - [TATGAATT] 333 (85.52)
5 + .AATGTATT. 7 (93.78)
5 + [CATGCATT] 664 (89.42)
5 + [AAATCATT] 1135 (85.79)
5 - [AATGATTT] 1135 (85.79)
5 - [AATGCATG] 664 (89.42)
5 - .AATACATT. 7 (93.78)
6 + [AATGAATA] 47 (85.52)
6 - [TATTCATT] 47 (85.52)
7 + [TATTCATT] 46 (85.52)
7 + .AATGCATT. 673 (100.00)
7 - .AATGCATT. 673 (100.00)
7 - [AATGAATA] 46 (85.52)
8 + [AATGAATA] 223 (85.52)
8 + [AATACAAT] 227 (85.04)
8 + [ATTGAATT] 236 (86.45)
8 + .AATACATT. 293 (93.78)
8 + .AAAGCATT. 319 (90.59)
8 + [AATTTATT] 606 (88.97)
8 + [AATGAAAT] 948 (86.45)
8 + [AATTCATA] 1143 (85.52)
8 + [TATGAATT] 1172 (85.52)
8 + [AATGCATG] 1226 (89.42)
8 - [CATGCATT] 1226 (89.42)
8 - [AATTCATA] 1172 (85.52)
8 - [TATGAATT] 1143 (85.52)
8 - [ATTTCATT] 948 (86.45)
8 - [AATAAATT] 606 (88.97)
8 - .AATGCTTT. 319 (90.59)
8 - .AATGTATT. 293 (93.78)
8 - [AATTCAAT] 236 (86.45)
8 - [ATTGTATT] 227 (85.04)
8 - [TATTCATT] 223 (85.52)
9 + .AATGAATT. 855 (95.19)
9 + [AATTCATA] 1006 (85.52)
9 + [AATTCATA] 1953 (85.52)
9 - [TATGAATT] 1953 (85.52)
9 - [TATGAATT] 1006 (85.52)
9 - .AATTCATT. 855 (95.19)
10 + [ATTGAATT] 283 (86.45)
10 + [AATACAAT] 651 (85.04)
10 + [ATTTCATT] 716 (86.45)
10 + [AATGATTT] 1056 (85.79)
10 + [ACTGCATT] 1078 (85.98)
10 + [AATGAATA] 1102 (85.52)
10 + .AATTCATT. 1518 (95.19)
10 + .AATGCATT. 1529 (100.00)
10 + [AATGCATC] 1656 (87.43)
10 + [ATTTCATT] 1812 (86.45)
10 - [AATGAAAT] 1812 (86.45)
10 - [GATGCATT] 1656 (87.43)
10 - .AATGCATT. 1529 (100.00)
10 - .AATGAATT. 1518 (95.19)
10 - [TATTCATT] 1102 (85.52)
10 - [AATGCAGT] 1078 (85.98)
10 - [AAATCATT] 1056 (85.79)
10 - [AATGAAAT] 716 (86.45)
10 - [ATTGTATT] 651 (85.04)
10 - [AATTCAAT] 283 (86.45)
11 + [ATTTCATT] 278 (86.45)
11 + .AATGTATT. 312 (93.78)
11 + [AATGAAAT] 396 (86.45)
11 + [ATTTCATT] 402 (86.45)
11 + .AATGAATT. 593 (95.19)
11 - .AATTCATT. 593 (95.19)
11 - [AATGAAAT] 402 (86.45)
11 - [ATTTCATT] 396 (86.45)
11 - .AATACATT. 312 (93.78)
11 - [AATGAAAT] 278 (86.45)
12 + [AAAGAATT] 388 (85.79)
12 + [AATTTATT] 413 (88.97)
12 - [AATAAATT] 413 (88.97)
12 - [AATTCTTT] 388 (85.79)
13 + [ATTGAATT] 37 (86.45)
13 + [AATACAAT] 93 (85.04)
13 + .AATGTATT. 103 (93.78)
13 + [AATTCTTT] 237 (85.79)
13 + .AATACATT. 343 (93.78)
13 + .AATTCATT. 629 (95.19)
13 - .AATGAATT. 629 (95.19)
13 - .AATGTATT. 343 (93.78)
13 - [AAAGAATT] 237 (85.79)
13 - .AATACATT. 103 (93.78)
13 - [ATTGTATT] 93 (85.04)
13 - [AATTCAAT] 37 (86.45)
15 + .AATGCTTT. 59 (90.59)
15 + [AATGATTT] 113 (85.79)
15 + .AATGCATT. 228 (100.00)
15 + .AATGAATT. 264 (95.19)
15 + [AATTGATT] 977 (85.01)
15 + .AATGTATT. 1129 (93.78)
15 + .AATTCATT. 1228 (95.19)
15 + [ATTTCATT] 1351 (86.45)
15 - [AATGAAAT] 1351 (86.45)
15 - .AATGAATT. 1228 (95.19)
15 - .AATACATT. 1129 (93.78)
15 - [AATCAATT] 977 (85.01)
15 - .AATTCATT. 264 (95.19)
15 - .AATGCATT. 228 (100.00)
15 - [AAATCATT] 113 (85.79)
15 - .AAAGCATT. 59 (90.59)
16 + .TATGCATT. 109 (90.33)
16 + [TATTCATT] 164 (85.52)
16 - [AATGAATA] 164 (85.52)
16 - .AATGCATA. 109 (90.33)
17 + [AATATATT] 270 (87.56)
17 + [ATTGAATT] 1844 (86.45)
17 - [AATTCAAT] 1844 (86.45)
17 - [AATATATT] 270 (87.56)
18 + .AATGCATT. 295 (100.00)
18 + [CATGCATT] 460 (89.42)
18 - [AATGCATG] 460 (89.42)
18 - .AATGCATT. 295 (100.00)
19 + .AATGCATA. 50 (90.33)
19 + [AATTCAAT] 476 (86.45)
19 + .AATTAATT. 626 (90.39)
19 + [AATTGATT] 926 (85.01)
19 + .AATTCATT. 1262 (95.19)
19 + [AATACAAT] 1291 (85.04)
19 + [AATGAAAT] 1455 (86.45)
19 + [AATCCATT] 1653 (89.82)
19 + .AATGCATT. 1936 (100.00)
19 + [AATTCTTT] 1959 (85.79)
19 - [AAAGAATT] 1959 (85.79)
19 - .AATGCATT. 1936 (100.00)
19 - [AATGGATT] 1653 (89.82)
19 - [ATTTCATT] 1455 (86.45)
19 - [ATTGTATT] 1291 (85.04)
19 - .AATGAATT. 1262 (95.19)
19 - [AATCAATT] 926 (85.01)
19 - .AATTAATT. 626 (90.39)
19 - [ATTGAATT] 476 (86.45)
19 - .TATGCATT. 50 (90.33)
20 + [AATTCTTT] 76 (85.79)
20 + .TATGCATT. 138 (90.33)
20 + .AATACATT. 301 (93.78)
20 + [AATGTAAT] 441 (85.04)
20 - [ATTACATT] 441 (85.04)
20 - .AATGTATT. 301 (93.78)
20 - .AATGCATA. 138 (90.33)
20 - [AAAGAATT] 76 (85.79)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 365 | 29 | 18 | 36 | | | | 57 | 0 | 0 | 3 |
2 | | 373 | 13 | 16 | 46 | | | | 60 | 0 | 0 | 0 |
3 | | 39 | 24 | 14 | 371 | | | | 2 | 0 | 0 | 58 |
4 | | 62 | 24 | 275 | 87 | | | | 9 | 0 | 38 | 13 |
5 | | 87 | 275 | 24 | 62 | | | | 13 | 38 | 0 | 9 |
6 | | 371 | 14 | 24 | 39 | | | | 58 | 0 | 0 | 2 |
7 | | 46 | 16 | 13 | 373 | | | | 0 | 0 | 0 | 60 |
8 | | 36 | 18 | 29 | 365 | | | | 3 | 0 | 0 | 57 |
ATCCTAAACA
TGTTTAGGAT
3 redundant motifs found:
TGTTTAGGATCA - ATCCTAAACAAC - ATGCTAAACA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .ATCCGAAACA. 81 (94.11)
1 + .ATTATAAAAA. 100 (90.35)
2 + [ATTTAAAAAA] 1310 (86.82)
2 + .ATTTTAAAAA. 1637 (91.03)
2 - [ATTTGAAACA] 1119 (88.15)
2 - .ATTCAAAACA. 621 (93.13)
2 - [ATCAAAAAAA] 306 (88.80)
2 - [TTCCAAAAAA] 40 (85.50)
3 + .ATCATAAAAA. 154 (93.01)
3 + .ATTTTAAACA. 333 (94.04)
3 - .ATCCAAAAAA. 712 (92.78)
3 - [ATCCTAAAAG] 167 (85.25)
4 + [ATGTTAAAAA] 22 (87.98)
4 + [ATTTAAAAAA] 1135 (86.82)
4 + [TTTTTAAACA] 1343 (86.77)
4 + .ATCCTAAACA. 1500 (100.00)
4 - [ATCTCAAAAA] 958 (85.67)
4 - [ATGTTAAAAA] 837 (87.98)
4 - [ATTCAAAACT] 486 (85.03)
4 - [TTTTTAAACA] 32 (86.77)
5 + [ATCATACACA] 1174 (86.32)
5 - [ATCCTAATAA] 1046 (86.80)
5 - [AAACTAAACA] 911 (85.53)
5 - [ATCCAAAATA] 279 (88.79)
5 - [ATACGAAACA] 120 (87.34)
5 - [ATCATAAATA] 11 (89.03)
6 + [TTCTAAAACA] 365 (85.21)
6 + [GTCCTAAAAA] 515 (85.06)
6 + [CTCCTAAAAA] 1123 (86.50)
6 - .ATTCAAAAAA. 951 (90.12)
6 - .ATTCAAAACA. 535 (93.13)
6 - [ATTTTAAATA] 160 (87.05)
6 - [ATCCAAAACT] 59 (87.69)
7 - [ATCTTAAATA] 97 (89.70)
8 + .ATCTGAAACA. 81 (90.81)
8 + .ATTTTAAAAA. 818 (91.03)
8 + [AATCTAAAAA] 919 (86.63)
8 + [ATGCCAAACA] 1124 (86.28)
8 - [TTCCAAAAAA] 978 (85.50)
8 - [ATTTGAAACA] 867 (88.15)
8 - [ATTGAAAACA] 667 (86.00)
8 - [ATTGAAAACA] 649 (86.00)
8 - [ATTGTAAAAA] 189 (87.19)
8 - [ATCTTATACA] 104 (85.71)
9 + [ATTTGAAAAA] 1080 (85.14)
9 + [ATCCAAAACT] 1802 (87.69)
9 - [ATTAAAAACA] 1615 (89.16)
10 + [ATTTGAAAAA] 1502 (85.14)
10 - [ATCCTTAAAA] 1159 (86.99)
10 - [ATTAAAAAAA] 87 (86.14)
11 + .ATGCTAAAAA. 263 (91.28)
11 + [AACATAAACA] 522 (88.32)
11 - .ATCAAAAACA. 679 (91.81)
11 - [ATGAAAAACA] 223 (86.11)
12 + [ATTCAAAATA] 272 (86.14)
12 - .ATTATAAAAA. 317 (90.35)
12 - .ATCCTAAACA. 284 (100.00)
12 - [ATGATAAAAA] 88 (87.30)
13 + [ATTTCAAACA] 1510 (86.03)
13 + .ATCCTAAACA. 1606 (100.00)
13 + .ATCCAAAAAA. 1654 (92.78)
13 - [AATATAAACA] 1114 (85.67)
14 + [AACATAAACA] 706 (88.32)
14 + .ATGCTAAACA. 750 (94.29)
14 - [ATTAAAAAAA] 167 (86.14)
15 + .ATTTTAAAAA. 269 (91.03)
15 + .ATGTTAAACA. 288 (90.99)
15 + [ATTTTAAAGA] 708 (85.62)
15 + [ATTCGAAAAA] 742 (88.44)
15 + [ATTTCAAACA] 852 (86.03)
15 - [ATCGAAAAAA] 1438 (85.64)
15 - .ATTTTAAAAA. 1207 (91.03)
15 - .ATTATAAAAA. 1174 (90.35)
15 - [TTTCAAAACA] 128 (85.86)
15 - [ATTCTAAAAT] 106 (86.23)
16 + [ATGCGAAACA] 121 (88.41)
17 + [AATCAAAACA] 320 (85.44)
17 + [ATTAAAAACA] 562 (89.16)
17 - [ACCCAAAACA] 1060 (85.77)
17 - [ATTTGAAACA] 284 (88.15)
17 - .ATTCTAAACA. 244 (97.34)
17 - [CTCATAAACA] 121 (85.53)
17 - [ATTTTAAAGA] 62 (85.62)
18 - [ATCATCAACA] 468 (85.82)
18 - [ATCCAACACA] 390 (86.09)
18 - [ATACAAAAAA] 145 (86.00)
19 + [ATCTAAAATA] 383 (85.49)
19 + [ATTTAAAAAA] 618 (86.82)
19 + [ATTTAAAACA] 1807 (89.83)
19 - [TTTTTAAACA] 1702 (86.77)
19 - [ATTCTTAACA] 1537 (87.35)
19 - [ATTCTACACA] 1361 (87.64)
19 - [ATCTGAAAAA] 434 (87.80)
20 + [TTCCAAAAAA] 213 (85.50)
20 + [ATCTCAAACA] 326 (88.69)
20 + [ATTCTATACA] 426 (86.35)
20 - [ATACAAAACA] 129 (89.02)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 247 | 16 | 11 | 37 | | | | 24 | 0 | 0 | 0 |
2 | | 33 | 18 | 14 | 246 | | | | 0 | 0 | 0 | 24 |
3 | | 28 | 164 | 37 | 82 | | | | 0 | 9 | 3 | 12 |
4 | | 57 | 161 | 25 | 68 | | | | 5 | 12 | 0 | 7 |
5 | | 62 | 23 | 40 | 186 | | | | 6 | 0 | 2 | 16 |
6 | | 258 | 18 | 16 | 19 | | | | 24 | 0 | 0 | 0 |
7 | | 264 | 21 | 11 | 15 | | | | 24 | 0 | 0 | 0 |
8 | | 271 | 11 | 10 | 19 | | | | 24 | 0 | 0 | 0 |
9 | | 82 | 180 | 20 | 29 | | | | 12 | 12 | 0 | 0 |
10 | | 257 | 11 | 12 | 31 | | | | 24 | 0 | 0 | 0 |
GATGAGGCAGTA
TACTGCCTCATC
1 redundant motifs found:
AGATGAGGCAGT -
Best occurrences (match percentage):
Seq St oligo pos match
2 - .GATGAGACAGTA. 1828 (97.12)
3 + [GATAAGATAGTA] 610 (87.40)
3 - [GAAGAAACAATA] 399 (85.16)
4 - [GATAAAGCTGTA] 969 (85.86)
5 + .GATGAGACAGTA. 689 (97.12)
5 + [GATGCAACAGTA] 704 (86.80)
5 + [GAAGAAGAAATA] 807 (86.49)
6 + [GATGATGCACTA] 603 (87.40)
6 - [GAAGAAGAAGTT] 548 (86.18)
7 - [GATGAAGTAGTT] 793 (86.73)
8 + [GATGAAGCAGTG] 618 (89.57)
9 + [GAAGAAGAAGAA] 1645 (88.22)
17 + [GAAGAAGAAGAA] 74 (88.22)
17 + [GAAGAAGAAGAA] 77 (88.22)
18 - [GATGAGGATATA] 170 (86.08)
19 + .GATGAGGCAGTA. 35 (100.00)
20 - [GACGAGACAGTA] 185 (88.56)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 19 | 6 | 81 | 12 | | | | 0 | 0 | 3 | 0 |
2 | | 99 | 2 | 5 | 12 | | | | 3 | 0 | 0 | 0 |
3 | | 25 | 6 | 5 | 82 | | | | 0 | 0 | 0 | 3 |
4 | | 19 | 8 | 83 | 8 | | | | 0 | 0 | 3 | 0 |
5 | | 87 | 8 | 9 | 14 | | | | 3 | 0 | 0 | 0 |
6 | | 32 | 5 | 69 | 12 | | | | 0 | 0 | 3 | 0 |
7 | | 29 | 6 | 70 | 13 | | | | 2 | 0 | 1 | 0 |
8 | | 36 | 58 | 11 | 13 | | | | 0 | 3 | 0 | 0 |
9 | | 96 | 5 | 5 | 12 | | | | 3 | 0 | 0 | 0 |
10 | | 15 | 10 | 82 | 11 | | | | 0 | 0 | 3 | 0 |
11 | | 23 | 9 | 12 | 74 | | | | 0 | 0 | 0 | 3 |
12 | | 90 | 5 | 8 | 15 | | | | 3 | 0 | 0 | 0 |
*** Interesting motifs (not highest-ranking) can also be :
CATGCATT
AATGCATG
6 redundant motifs found:
CTCATGCATT - TCATGCATTT - CATGCATTTG - ATGCATTT - AATGCATT - ATGCAT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATACATT. 196 (90.50)
1 + [AATTAATT] 463 (86.57)
1 - [AATTAATT] 463 (86.57)
1 - .AATGTATT. 196 (90.34)
2 + .CATTCATT. 322 (95.81)
2 + [TATACATT] 337 (88.50)
2 + [GATTCATT] 754 (87.02)
2 + [CATGCAAT] 1381 (89.29)
2 + [CTTTCATT] 1541 (87.50)
2 + [AATTTATT] 1714 (86.15)
2 - [AATAAATT] 1714 (85.34)
2 - [CATGATTT] 1645 (85.24)
3 + .CATGCATT. 328 (100.00)
3 + [TATGTATT] 395 (88.34)
3 + .CATTTATT. 734 (90.23)
3 + .CATGTATT. 1026 (94.42)
3 - [CTTTCATT] 629 (87.50)
3 - .CATTTATT. 197 (90.23)
4 + .AATACATT. 493 (90.50)
4 + .AATGCATT. 575 (95.92)
4 + [AATTAATT] 816 (86.57)
4 - [AATTAATT] 816 (86.57)
4 - .AATGCATT. 575 (95.92)
4 - .AATGTATT. 493 (90.34)
4 - [GATGAATT] 374 (86.05)
4 - [TATGAATT] 333 (88.76)
4 - .CATTCATT. 301 (95.81)
5 + .AATGTATT. 7 (90.34)
5 + .CATGAATT. 35 (94.84)
5 + .CATGCATT. 664 (100.00)
5 + .CATACATT. 924 (94.57)
5 - .AATACATT. 7 (90.50)
6 + [CAAGCATT] 619 (89.71)
6 + [CTTGAATT] 1220 (86.53)
6 - [TATTCATT] 47 (89.73)
7 + [TATTCATT] 46 (89.73)
7 + [CATATATT] 93 (88.99)
7 + .AATGCATT. 673 (95.92)
7 + [CATTCAAT] 817 (85.10)
7 - .AATGCATT. 673 (95.92)
7 - .CATTTATT. 669 (90.23)
7 - [TTTGCATT] 661 (85.62)
7 - [TATGTATT] 89 (88.34)
8 + .AATACATT. 293 (90.50)
8 + [AAAGCATT] 319 (85.64)
8 + [CTTGAATT] 500 (86.53)
8 + [AATTTATT] 606 (86.15)
8 + [TATGAATT] 1172 (88.76)
8 - .CATGCATT. 1226 (100.00)
8 - [TATGAATT] 1143 (88.76)
8 - [GATTCATT] 881 (87.02)
8 - [AATAAATT] 606 (85.34)
8 - [AATGCTTT] 319 (86.32)
8 - .AATGTATT. 293 (90.34)
8 - [CTTTCATT] 282 (87.50)
8 - [TATTCATT] 223 (89.73)
9 + [CATGATTT] 588 (85.24)
9 + .CATTTATT. 728 (90.23)
9 + .AATGAATT. 855 (90.76)
9 + [CATAAATT] 1010 (89.41)
9 - [TATGAATT] 1953 (88.76)
9 - [GATGTATT] 1323 (85.63)
9 - [GATGAATT] 1243 (86.05)
9 - [TATGAATT] 1006 (88.76)
9 - .AATTCATT. 855 (91.73)
9 - [GATGAATT] 272 (86.05)
9 - [CATTCAAT] 156 (85.10)
10 + .CATTCATT. 476 (95.81)
10 + [CTTTCATT] 893 (87.50)
10 + [CATATATT] 1483 (88.99)
10 + .AATTCATT. 1518 (91.73)
10 + .AATGCATT. 1529 (95.92)
10 - .GATGCATT. 1656 (91.21)
10 - [GATTCATT] 1543 (87.02)
10 - .AATGCATT. 1529 (95.92)
10 - .AATGAATT. 1518 (90.76)
10 - [TATGTATT] 1106 (88.34)
10 - [TATTCATT] 1102 (89.73)
10 - [TTTGCATT] 865 (85.62)
10 - [CATGCATA] 556 (89.97)
11 + [TTTGCATT] 36 (85.62)
11 + [CTTGAATT] 190 (86.53)
11 + [CATAAATT] 239 (89.41)
11 + .AATGTATT. 312 (90.34)
11 + .AATGAATT. 593 (90.76)
11 - .AATTCATT. 593 (91.73)
11 - .AATACATT. 312 (90.50)
11 - .CATTCATT. 258 (95.81)
12 + [AATTTATT] 413 (86.15)
12 + [CTTTCATT] 449 (87.50)
12 + .CATTCATT. 453 (95.81)
12 - [AATAAATT] 413 (85.34)
12 - .CATGTATT. 278 (94.42)
13 + .AATGTATT. 103 (90.34)
13 + .AATACATT. 343 (90.50)
13 + .AATTCATT. 629 (91.73)
13 + [CATAAATT] 666 (89.41)
13 + [CATGATTT] 925 (85.24)
13 + [CATGGATT] 1449 (87.75)
13 + [CAAGCATT] 1557 (89.71)
13 + .CATACATT. 1699 (94.57)
13 - [TATGTATT] 1671 (88.34)
13 - [CATGCAAT] 1490 (89.29)
13 - .AATGAATT. 629 (90.76)
13 - .AATGTATT. 343 (90.34)
13 - [CTTTCATT] 304 (87.50)
13 - .AATACATT. 103 (90.50)
13 - [CTTGTATT] 83 (86.11)
14 + [GATGAATT] 247 (86.05)
14 + .CATGAATT. 968 (94.84)
14 - [CATGCAGT] 44 (87.03)
15 + [AATGCTTT] 59 (86.32)
15 + .AATGCATT. 228 (95.92)
15 + .AATGAATT. 264 (90.76)
15 + [CATTCAAT] 296 (85.10)
15 + .AATGTATT. 1129 (90.34)
15 + .AATTCATT. 1228 (91.73)
15 + [CATTCAAT] 1232 (85.10)
15 + .CATGCTTT. 1500 (90.40)
15 - .AATGAATT. 1228 (90.76)
15 - .AATACATT. 1129 (90.50)
15 - .AATTCATT. 264 (91.73)
15 - .CATTTATT. 260 (90.23)
15 - .AATGCATT. 228 (95.92)
15 - [AAAGCATT] 59 (85.64)
16 + .TATGCATT. 109 (93.92)
16 + [CTTGTATT] 160 (86.11)
16 + [TATTCATT] 164 (89.73)
16 - [AATGCATA] 109 (85.90)
16 - [CATGCAAT] 48 (89.29)
16 - [GATACATT] 37 (85.78)
17 + [CAATCATT] 150 (85.53)
17 + [TATACATT] 277 (88.50)
17 - [TTTGCATT] 1382 (85.62)
17 - [CATGCACT] 1322 (88.16)
17 - [CTTGTATT] 1232 (86.11)
17 - .CATTCATT. 1148 (95.81)
17 - .CATTCATT. 1144 (95.81)
17 - [TTTGCATT] 1028 (85.62)
17 - [CTTGTATT] 939 (86.11)
17 - [CTTGTATT] 403 (86.11)
18 + .AATGCATT. 295 (95.92)
18 + .CATGCATT. 460 (100.00)
18 - .CATGAATT. 360 (94.84)
18 - .AATGCATT. 295 (95.92)
19 + [AATGCATA] 50 (85.90)
19 + [AATTAATT] 626 (86.57)
19 + .AATTCATT. 1262 (91.73)
19 + [CATTCAAT] 1318 (85.10)
19 + [CTTTCATT] 1618 (87.50)
19 + .CATTTATT. 1634 (90.23)
19 + [CAAGCATT] 1863 (89.71)
19 + [CATTCAAT] 1883 (85.10)
19 + .AATGCATT. 1936 (95.92)
19 - .AATGCATT. 1936 (95.92)
19 - [TATACATT] 1711 (88.50)
19 - .AATGAATT. 1262 (90.76)
19 - [AATTAATT] 626 (86.57)
19 - .TATGCATT. 50 (93.92)
19 - .CATTTATT. 14 (90.23)
20 + .TATGCATT. 138 (93.92)
20 + .AATACATT. 301 (90.50)
20 + [TATACATT] 430 (88.50)
20 - .AATGTATT. 301 (90.34)
20 - [AATGCATA] 138 (85.90)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 60 | 170 | 18 | 36 | | | | 44 | 26 | 1 | 3 |
2 | | 242 | 6 | 7 | 29 | | | | 74 | 0 | 0 | 0 |
3 | | 18 | 11 | 6 | 249 | | | | 0 | 0 | 0 | 74 |
4 | | 43 | 10 | 172 | 59 | | | | 11 | 0 | 42 | 21 |
5 | | 49 | 183 | 8 | 44 | | | | 10 | 46 | 0 | 18 |
6 | | 244 | 12 | 7 | 21 | | | | 73 | 0 | 0 | 1 |
7 | | 16 | 12 | 9 | 247 | | | | 0 | 0 | 0 | 74 |
8 | | 19 | 10 | 9 | 246 | | | | 0 | 0 | 0 | 74 |
CATGCATTTG
CAAATGCATG
4 redundant motifs found:
ATGCATTTGT - TCATGCATTT - ATGCATTT - CATGCATT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [AATACATTTC] 196 (85.88)
1 - [AATGTATTTA] 194 (86.66)
2 + [AATGAAATTG] 611 (85.63)
2 + [GATTCATTTT] 754 (86.83)
2 + [CTTTCATTTT] 1541 (86.48)
2 - [CATGATTTTT] 1643 (87.07)
3 + .CATGCATTTT. 328 (97.17)
3 + [CATTTATTTA] 734 (86.37)
3 + [GATTTATTTG] 918 (85.27)
3 + [GATTTATTTG] 927 (85.27)
3 + .CATGTATTTT. 1026 (92.78)
3 - [CTTTCATTTT] 627 (86.48)
3 - [CATGAGTTTG] 322 (86.03)
4 + [AATACATTTT] 493 (89.45)
4 + [AATGCATTAG] 575 (86.34)
4 + [AATTAATTTT] 816 (86.93)
4 + [TATTAATTTT] 830 (85.35)
4 - [AATTAATTTT] 814 (86.93)
4 - [GATGAATTTG] 372 (89.92)
4 - [TATGAATTTT] 331 (88.95)
4 - .CATTCATTTT. 299 (93.58)
5 + [AATGTATTTA] 7 (86.66)
5 + .CATGAATTTT. 35 (93.83)
5 + .CATGCATTTC. 664 (93.60)
6 + [CATGTAATTT] 249 (85.06)
6 + [CAAGCATTTA] 619 (86.72)
6 + [CTTGAATTTT] 1220 (86.74)
6 - [CATGTTTTTG] 243 (88.85)
6 - .TATTCATTTG. 45 (91.52)
7 + [CATATATTTA] 93 (85.55)
7 + .AATGCATTTG. 673 (96.69)
7 - .AATGCATTTA. 671 (91.05)
7 - [CATTTATTTT] 667 (89.19)
7 - [TTTGCATTTG] 659 (88.02)
7 - [TATGTATTTT] 87 (87.90)
8 + [AATTTATTTG] 606 (88.71)
8 - .CATGCATTTT. 1224 (97.17)
8 - [TATGAATTTT] 1141 (88.95)
8 - [TATTCATTTT] 221 (88.69)
9 + [CATTTATTTA] 728 (86.37)
9 + .AATGAATTTG. 855 (93.35)
9 + [CATTCAGTTG] 1281 (85.65)
9 + [CAGGAATTTG] 1735 (86.31)
9 - [TATGAATTTT] 1951 (88.95)
9 - [GATGTATTTG] 1321 (88.87)
9 - [CACTCATTTG] 1255 (86.59)
9 - .AATTCATTTT. 853 (90.27)
10 + [AATGATTTTG] 1056 (86.59)
10 + [ATTTCATTTG] 1812 (86.00)
10 - [GATGCATTTC] 1654 (86.85)
10 - .AATGCATTTC. 1527 (90.29)
10 - .AATGAATTTG. 1516 (93.35)
10 - [TTTGCATTTG] 863 (88.02)
10 - [CATGCATATA] 554 (86.58)
11 + [CTTGAATTTT] 190 (86.74)
11 + [CATAAATTTT] 239 (89.42)
11 + [AATGTATTTT] 312 (89.47)
11 - [AATGAAATTG] 276 (85.63)
11 - [CATTCATTAG] 256 (86.05)
12 + .CATTCATTTG. 453 (96.40)
12 - [AATTCTTTTG] 386 (86.34)
12 - .CATGTATTTT. 276 (92.78)
12 - [GATTTATTTG] 54 (85.27)
13 + [AATGTATTTA] 103 (86.66)
13 + [AATACATTTT] 343 (89.45)
13 + .CATAAATTTG. 666 (92.25)
13 + [CAAGCATTTT] 1557 (89.54)
13 + .CATACATTTT. 1699 (92.76)
13 - [CATGCAATTA] 1488 (86.63)
13 - [CATGCTTATG] 1443 (85.47)
13 - [TATTAATTTG] 845 (88.18)
13 - [AATGTATTTT] 341 (89.47)
13 - [AATACATTTT] 101 (89.45)
13 - [CTTGTATTTT] 81 (85.68)
14 + [CATGAATTCG] 968 (86.57)
15 + .AATGCATTTA. 228 (91.05)
15 + .AATGAATTTT. 264 (90.53)
15 + [CATTCAATTT] 296 (85.85)
15 + [CATTCAATTT] 1232 (85.85)
15 + [CATGCTTTTC] 1500 (86.84)
15 - [CATGAATATG] 1579 (88.89)
15 - .AATGAATTTT. 1226 (90.53)
15 - [AATACATTTT] 1127 (89.45)
15 - [CATGTTTTTT] 474 (86.02)
15 - [AATTCATTTA] 262 (87.45)
15 - .CATTTATTTG. 258 (92.01)
15 - .AATGCATTTT. 226 (93.86)
16 + .TATGCATTTG. 109 (95.12)
16 + [CATTCCTTTG] 168 (85.44)
16 - [CAAACATTTG] 67 (87.96)
16 - [GATACATTTG] 35 (88.84)
17 + [CAATCATTTT] 150 (85.94)
17 + [TATTAATTTT] 857 (85.35)
17 - [AATTCAATTG] 1842 (85.37)
17 - [CTTGTATTTT] 937 (85.68)
17 - [AATATATTTT] 268 (85.06)
18 + .CATGCATTTG. 460 (100.00)
18 - .CATGAATTTG. 358 (96.66)
19 + [CATGAATATT] 662 (86.06)
19 + [AATGAAATTG] 1455 (85.63)
19 + [CAAGCATTTC] 1863 (85.96)
19 - [TATAAATTTG] 1927 (87.37)
19 - [CATACATATG] 1728 (87.82)
19 - [TATACATTTT] 1709 (87.88)
19 - .AATGAATTTG. 1260 (93.35)
19 - [CATGTTTTTT] 827 (86.02)
19 - [AATTAATTTT] 624 (86.93)
19 - .TATGCATTTG. 48 (95.12)
19 - [CATTTATTTT] 12 (89.19)
20 + [AATACATTTC] 301 (85.88)
20 + [TATACATTTA] 430 (85.06)
20 - .AATGTATTTG. 299 (92.30)
20 - [CATGAAGTTG] 28 (85.91)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 61 | 156 | 23 | 39 | | | | 12 | 13 | 0 | 3 |
2 | | 225 | 14 | 10 | 30 | | | | 28 | 0 | 0 | 0 |
3 | | 26 | 14 | 12 | 227 | | | | 0 | 0 | 0 | 28 |
4 | | 46 | 14 | 161 | 58 | | | | 2 | 0 | 21 | 5 |
5 | | 62 | 160 | 11 | 46 | | | | 8 | 16 | 0 | 4 |
6 | | 225 | 10 | 11 | 33 | | | | 28 | 0 | 0 | 0 |
7 | | 26 | 9 | 11 | 233 | | | | 0 | 0 | 0 | 28 |
8 | | 26 | 11 | 6 | 236 | | | | 0 | 0 | 0 | 28 |
9 | | 13 | 14 | 6 | 246 | | | | 0 | 0 | 0 | 28 |
10 | | 31 | 25 | 154 | 69 | | | | 2 | 2 | 13 | 11 |
ATCATGAT
ATCATGAT
3 redundant motifs found:
GTCATGAC - ATCTAGAT - TCATGA -
Best occurrences (match percentage):
Seq St oligo pos match
2 + [ATAATGAA] 609 (85.05)
2 + [ATATTGAT] 1262 (85.18)
2 + .ATAATGAT. 1296 (93.10)
2 + [ATCATGAG] 1647 (86.44)
2 - [CTCATGAT] 1647 (86.44)
2 - .ATCATTAT. 1296 (93.10)
2 - [ATCAATAT] 1262 (85.18)
2 - [TTCATTAT] 609 (85.05)
3 + [ATCATAAA] 154 (85.59)
3 + [ATTATTAT] 838 (86.73)
3 - [ATAATAAT] 838 (86.73)
3 - [TTTATGAT] 154 (85.59)
4 + [ATCAAAAT] 379 (85.72)
4 + [ATAATAAT] 1030 (86.73)
4 + [ATCAAAAT] 1284 (85.72)
4 + [ATCATAAA] 1299 (85.59)
4 - [TTTATGAT] 1299 (85.59)
4 - [ATTTTGAT] 1284 (85.72)
4 - [ATTATTAT] 1030 (86.73)
4 - [ATTTTGAT] 379 (85.72)
5 + [TTTATGAT] 13 (85.59)
5 + .ATCATTAT. 1013 (93.10)
5 + [ATAATTAT] 1032 (86.19)
5 - [ATAATTAT] 1032 (86.19)
5 - .ATAATGAT. 1013 (93.10)
5 - [ATCATAAA] 13 (85.59)
6 + [ATTATTAT] 901 (86.73)
6 - [ATAATAAT] 901 (86.73)
7 + [ATAAAGAT] 113 (85.18)
7 + [ATAATAAT] 145 (86.73)
7 - [ATTATTAT] 145 (86.73)
7 - [ATCTTTAT] 113 (85.18)
8 + .ATCATGTT. 645 (91.29)
8 + .ATCATGTT. 663 (91.29)
8 - .AACATGAT. 663 (91.29)
8 - .AACATGAT. 645 (91.29)
9 + [TTTATGAT] 421 (85.59)
9 + .ATCATGAT. 586 (100.00)
9 + [ATCAAAAT] 637 (85.72)
9 + [ATATTGAT] 1971 (85.18)
9 - [ATCAATAT] 1971 (85.18)
9 - [ATTTTGAT] 637 (85.72)
9 - .ATCATGAT. 586 (100.00)
9 - [ATCATAAA] 421 (85.59)
10 + [ATCAAAAT] 64 (85.72)
10 + [ATCATGCT] 324 (87.28)
10 + [ATAATGAA] 1541 (85.05)
10 - [TTCATTAT] 1541 (85.05)
10 - [AGCATGAT] 324 (87.28)
10 - [ATTTTGAT] 64 (85.72)
11 + .ATCTTGAT. 65 (92.08)
11 + [TTCATTAT] 280 (85.05)
11 + [ATCAAAAT] 427 (85.72)
11 + [ATTATAAT] 691 (87.27)
11 + [ATTTTGAT] 703 (85.72)
11 + [ATCTTAAT] 736 (85.72)
11 - [ATTAAGAT] 736 (85.72)
11 - [ATCAAAAT] 703 (85.72)
11 - [ATTATAAT] 691 (87.27)
11 - [ATTTTGAT] 427 (85.72)
11 - [ATAATGAA] 280 (85.05)
11 - .ATCAAGAT. 65 (92.08)
12 + [TTCATAAT] 229 (85.59)
12 + .ATAATGAT. 232 (93.10)
12 - .ATCATTAT. 232 (93.10)
12 - [ATTATGAA] 229 (85.59)
13 + .ATCATGAT. 494 (100.00)
13 + [ATCAAAAT] 953 (85.72)
13 + [ATTATTAT] 1317 (86.73)
13 - [ATAATAAT] 1317 (86.73)
13 - [ATTTTGAT] 953 (85.72)
13 - .ATCATGAT. 494 (100.00)
14 + [ATTATAAT] 439 (87.27)
14 + [ATCATTAA] 605 (85.05)
14 - [TTAATGAT] 605 (85.05)
14 - [ATTATAAT] 439 (87.27)
15 + .ATCTTGAT. 584 (92.08)
15 + [ATTTTGAT] 1033 (85.72)
15 + [TTCATAAT] 1065 (85.59)
15 + [ATCATGCT] 1498 (87.28)
15 - [AGCATGAT] 1498 (87.28)
15 - [ATTATGAA] 1065 (85.59)
15 - [ATCAAAAT] 1033 (85.72)
15 - .ATCAAGAT. 584 (92.08)
16 + .ATCAAGAT. 42 (92.08)
16 - .ATCTTGAT. 42 (92.08)
17 + [CTCATGAT] 184 (86.44)
17 + [ATAATAAT] 398 (86.73)
17 + [ATCAATAT] 497 (85.18)
17 + .ATCATTAT. 1606 (93.10)
17 + [ATCAAAAT] 1638 (85.72)
17 + [TTCATTAT] 1767 (85.05)
17 - [ATAATGAA] 1767 (85.05)
17 - [ATTTTGAT] 1638 (85.72)
17 - .ATAATGAT. 1606 (93.10)
17 - [ATATTGAT] 497 (85.18)
17 - [ATTATTAT] 398 (86.73)
17 - [ATCATGAG] 184 (86.44)
18 + .ATCTTGAT. 398 (92.08)
18 - .ATCAAGAT. 398 (92.08)
19 + [TTCATAAT] 87 (85.59)
19 + .ATCATGAA. 660 (91.95)
19 + [ATAATAAT] 1648 (86.73)
19 - [ATTATTAT] 1648 (86.73)
19 - .TTCATGAT. 660 (91.95)
19 - [ATTATGAA] 87 (85.59)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 278 | 12 | 15 | 43 | | | | 25 | 0 | 0 | 1 |
2 | | 38 | 9 | 15 | 286 | | | | 2 | 0 | 0 | 24 |
3 | | 45 | 223 | 29 | 51 | | | | 4 | 22 | 0 | 0 |
4 | | 276 | 13 | 15 | 44 | | | | 22 | 0 | 0 | 4 |
5 | | 44 | 15 | 13 | 276 | | | | 4 | 0 | 0 | 22 |
6 | | 51 | 29 | 223 | 45 | | | | 0 | 0 | 22 | 4 |
7 | | 286 | 15 | 9 | 38 | | | | 24 | 0 | 0 | 2 |
8 | | 43 | 15 | 12 | 278 | | | | 1 | 0 | 0 | 25 |
TCATGCATTT
AAATGCATGA
6 redundant motifs found:
AAATGCATGAGA - ATGCATTTGT - CTCATGCATT - CATGCATTTG - ATGCATTT - CATGCATT -
Best occurrences (match percentage):
Seq St oligo pos match
1 - [TCATTGATTT] 107 (89.96)
1 - [TCTTGCAATT] 46 (85.69)
2 + [TATTTCATTT] 1136 (86.06)
2 + [TTTTGTATTT] 1480 (86.13)
2 - [TCATGATTTT] 1644 (89.69)
3 + .TCATGCATTT. 327 (100.00)
3 + [TTTTTCATTT] 729 (87.43)
3 + .TCATTTATTT. 733 (92.99)
3 + [TGATTTATTT] 917 (85.87)
3 + [TGATTTATTT] 926 (85.87)
3 + .TCATGTATTT. 1025 (95.85)
3 - [TTATTTATTT] 851 (89.05)
3 - [TTATTTATTT] 847 (89.05)
3 - .TCTTTCATTT. 628 (91.36)
4 + [TTATTAATTT] 829 (89.72)
4 + [TTTTGTATTT] 1372 (86.13)
4 - [TTTTACATTT] 807 (86.53)
4 - [TGATGAATTT] 373 (89.39)
4 - .TCATTCATTT. 300 (97.14)
4 - [TGATAAATTT] 254 (85.63)
4 - [TTATTGATTT] 140 (86.02)
5 + [TGATTTATTT] 17 (85.87)
5 + .ACATGAATTT. 34 (90.13)
5 + .TCATGCATTT. 663 (100.00)
5 + [TTATTTATTT] 1072 (89.05)
6 + [ACAAGCATTT] 618 (85.52)
6 + [TTTTGAATTT] 953 (86.80)
6 - .TTATTCATTT. 46 (93.21)
7 + [ACATATATTT] 92 (85.70)
7 + [TGATAAATTT] 261 (85.63)
7 + [AAATGCATTT] 672 (88.31)
7 - [AAATGCATTT] 672 (88.31)
7 - .TTTTGCATTT. 660 (90.28)
7 - [TTTTACATTT] 388 (86.53)
7 - [ATATGTATTT] 88 (85.52)
8 - .TCATGCATTT. 1225 (100.00)
9 + [TCATGATTTT] 587 (89.69)
9 + .TCATTTATTT. 727 (92.99)
9 + [TTATTTATTT] 977 (89.05)
9 + [TTATCAATTT] 1074 (86.33)
9 + [TTATAGATTT] 1695 (85.12)
9 + [TCTTCCATTT] 1829 (87.97)
9 - [ATATGAATTT] 1952 (86.19)
9 - [AAATTCATTT] 854 (85.45)
10 + [TCTTTAATTT] 495 (87.88)
10 + [TGATTTATTT] 1806 (85.87)
10 + [TATTTCATTT] 1811 (86.06)
10 - [AGATGCATTT] 1655 (86.49)
10 - [CAATGCATTT] 1528 (85.80)
11 + [TTATAAATTT] 121 (88.82)
11 + .TCTTGAATTT. 189 (90.74)
11 + [TCATGTTTTT] 220 (89.03)
11 + [ACATAAATTT] 238 (86.37)
11 + .TAATGTATTT. 311 (90.54)
11 - [TCACACATTT] 504 (86.88)
12 + [TAATTTATTT] 412 (87.69)
12 + .TCATTCATTT. 452 (97.14)
12 - [TAATTCTTTT] 387 (85.02)
12 - [ACATGTATTT] 277 (89.46)
13 + [ACATAAATTT] 665 (86.37)
13 + [ACAAGCATTT] 1556 (85.52)
13 + .TCATACATTT. 1698 (96.24)
13 - [TCGTACATTT] 1346 (85.23)
13 - [TTATTGATTT] 944 (86.02)
14 + [TTATAGATTT] 259 (85.12)
14 - [TTATGTTTTT] 703 (85.09)
15 + [AAATGCATTT] 227 (88.31)
15 + [TCATTCAATT] 1231 (88.61)
15 + [TCATGAACTT] 1360 (85.93)
15 + .TCATGCTTTT. 1499 (93.18)
15 - [TCATGAATAT] 1580 (87.07)
15 - [TTATTAATTT] 1280 (89.72)
15 - [TCATGTTTTT] 475 (89.03)
15 - [TTATGTTTTT] 332 (85.09)
15 - [AAATTCATTT] 263 (85.45)
15 - .TCATTTATTT. 259 (92.99)
15 - [AAATGCATTT] 227 (88.31)
16 + [GTATGCATTT] 108 (86.75)
16 + [TCATTCCTTT] 167 (85.44)
16 - [TGATACATTT] 36 (89.12)
17 + [TTATAAATTT] 339 (88.82)
17 + [TCATTTTTTT] 1621 (86.17)
17 - [TTTTTCATTT] 1215 (87.43)
17 - [TCATTCATTC] 1147 (86.16)
17 - [TCATTCATTC] 1143 (86.16)
17 - .TCTTGTATTT. 938 (90.07)
17 - [TAATATATTT] 269 (86.78)
18 + [TCTTAAATTT] 76 (86.98)
18 + [TTATCAATTT] 138 (86.33)
18 + [TTTTGTATTT] 147 (86.13)
18 + .CCATGCATTT. 459 (91.10)
18 - [CCATGAATTT] 359 (87.62)
18 - [TTCTGCATTT] 273 (85.86)
18 - [TCTTAAATTT] 80 (86.98)
19 + [TCATGAATAT] 661 (87.07)
19 + [TTTTACATTT] 1757 (86.53)
19 + .TCAAGCATTT. 1862 (91.90)
19 - [TTATAAATTT] 1928 (88.82)
19 - [CTATGCATTT] 49 (87.17)
20 + [TCCTTCATTT] 498 (86.94)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 56 | 29 | 26 | 299 | | | | 1 | 1 | 0 | 18 |
2 | | 58 | 233 | 36 | 83 | | | | 1 | 17 | 0 | 2 |
3 | | 305 | 21 | 17 | 67 | | | | 16 | 0 | 0 | 4 |
4 | | 39 | 28 | 17 | 326 | | | | 1 | 0 | 0 | 19 |
5 | | 75 | 39 | 201 | 95 | | | | 1 | 0 | 12 | 7 |
6 | | 87 | 217 | 33 | 73 | | | | 2 | 12 | 0 | 6 |
7 | | 323 | 15 | 18 | 54 | | | | 19 | 0 | 0 | 1 |
8 | | 36 | 21 | 16 | 337 | | | | 0 | 0 | 0 | 20 |
9 | | 30 | 12 | 11 | 357 | | | | 0 | 0 | 0 | 20 |
10 | | 19 | 20 | 15 | 356 | | | | 0 | 0 | 0 | 20 |
ATCCTAAACAAC
GTTGTTTAGGAT
2 redundant motifs found:
ATCCGAAACAAC - ATCCTAAACA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .ATCCGAAACAAC. 81 (94.92)
1 + [ATTATAAAAATC] 100 (85.33)
2 + [ATTTTAAAAAAT] 1637 (88.29)
2 - [ATTTGAAACAAA] 1117 (87.00)
2 - [AATCAAAAAAAA] 305 (85.34)
2 - [ATCAAAAAAAAA] 304 (88.04)
2 - [TTCCAAAAAAAA] 38 (87.69)
3 + .ATTTTAAACAAA. 333 (92.08)
3 - [ATCCAAAAAATC] 710 (88.36)
4 + [ATTTAAAAAAAA] 1135 (87.08)
4 + [ATCCTAAACATG] 1500 (87.32)
4 - [TTTCAAAAAAAA] 1157 (85.92)
5 - [AAACTAAACAAA] 909 (87.64)
5 - .ATACGAAACAAC. 118 (90.45)
6 + [TTTCAAAAAAAA] 376 (85.92)
6 + .CTCCTAAAAAAC. 1123 (90.24)
6 - .ATTCAAAAAAAA. 949 (90.78)
6 - .ATTCAAAACAAA. 533 (92.51)
8 + .ATTTTAAAAAAC. 818 (92.80)
9 + [ATCCAAAACTAC] 1802 (88.97)
9 - [ATTAAAAACAAA] 1613 (87.98)
10 + [ATTTGAAAAAAC] 1502 (87.72)
10 - [ATTAAAAAAAAA] 85 (86.26)
11 + [ATGCTAAAAAAG] 263 (86.91)
11 - .ATCAAAAACAAC. 677 (92.20)
12 - [ATCCTAAACATG] 282 (87.32)
13 + .ATCCTAAACAAC. 1606 (100.00)
13 + [ATCCAAAAAACC] 1654 (87.30)
13 - [AATATAAACAAA] 1112 (85.81)
13 - [ATTAAAAATAAC] 153 (85.26)
14 + [AACATAAACAAA] 706 (87.59)
14 + [ATGCTAAACACC] 750 (86.96)
15 + [ATTTTAAAAAAG] 269 (86.76)
15 + [ATTCGAAAAAAA] 742 (88.98)
15 - [ATTTTAAAAAAT] 1205 (88.29)
17 + [AATCAAAACAAA] 320 (87.06)
17 - [ATTCTAAACATT] 242 (87.06)
18 - [ATCCAACACAAA] 388 (85.81)
19 + [ATCTAAAATAAC] 383 (87.86)
19 + [AACAAAAAAAAC] 694 (85.04)
19 - [TTTTTAAACAAT] 1700 (85.14)
19 - [ATTCTTAACAAA] 1535 (87.17)
20 - [ATACAAAACAAA] 127 (89.81)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 174 | 16 | 10 | 41 | | | | 8 | 1 | 0 | 0 |
2 | | 35 | 19 | 11 | 176 | | | | 0 | 0 | 0 | 9 |
3 | | 31 | 117 | 24 | 69 | | | | 1 | 4 | 0 | 4 |
4 | | 36 | 138 | 21 | 46 | | | | 1 | 6 | 0 | 2 |
5 | | 53 | 17 | 31 | 140 | | | | 3 | 0 | 2 | 4 |
6 | | 193 | 16 | 17 | 15 | | | | 9 | 0 | 0 | 0 |
7 | | 198 | 16 | 11 | 16 | | | | 9 | 0 | 0 | 0 |
8 | | 207 | 8 | 10 | 16 | | | | 9 | 0 | 0 | 0 |
9 | | 75 | 125 | 14 | 27 | | | | 3 | 6 | 0 | 0 |
10 | | 200 | 10 | 11 | 20 | | | | 9 | 0 | 0 | 0 |
11 | | 187 | 19 | 9 | 26 | | | | 9 | 0 | 0 | 0 |
12 | | 61 | 126 | 21 | 33 | | | | 3 | 6 | 0 | 0 |
CTCATGCATT
AATGCATGAG
3 redundant motifs found:
AAATGCATGAGA - TCATGCATTT - CATGCATT -
Best occurrences (match percentage):
Seq St oligo pos match
1 - [CTCATTGATT] 108 (87.55)
2 - [CTCATGATTT] 1645 (87.63)
2 - [CTCATACATA] 55 (86.11)
3 + .CTCATGCATT. 326 (100.00)
3 + [TTCATTTATT] 732 (87.87)
3 + .TTCATGTATT. 1024 (91.51)
4 - .CTAATGCATT. 575 (94.66)
4 - .TTCATTCATT. 301 (93.08)
5 + .GTCATGCATT. 662 (92.01)
6 - .CTTATTCATT. 47 (90.55)
7 + [TTTATTCATT] 44 (87.27)
7 + [CTCAAGAATT] 308 (85.70)
7 - [CAAATGCATT] 673 (87.92)
8 - .CTCATGCATT. 1226 (100.00)
9 + [TTCATTTATT] 726 (87.87)
9 + [TTCATAAATT] 1008 (86.80)
9 - [TTTATGAATT] 1006 (86.11)
11 + [TTAATGTATT] 310 (86.17)
12 + .TTCATTCATT. 451 (93.08)
13 + .CTCATACATT. 1697 (94.89)
15 + [ATCATGCTTT] 1498 (86.84)
15 - [TTCATTTATT] 260 (87.87)
17 - .CTCATGCACT. 1322 (90.10)
17 - .ATCATTCATT. 1148 (90.76)
17 - .TTCATTCATT. 1144 (93.08)
18 + [CTCATGAATA] 537 (86.42)
18 - .TTAATGCATT. 295 (91.38)
19 + [TTCAAGCATT] 1861 (87.22)
19 + [ATAATGCATT] 1934 (89.07)
19 - [GTAATGCATT] 1936 (86.67)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 30 | 130 | 16 | 55 | | | | 1 | 6 | 1 | 5 |
2 | | 29 | 18 | 14 | 170 | | | | 0 | 0 | 0 | 13 |
3 | | 35 | 142 | 23 | 31 | | | | 2 | 10 | 0 | 1 |
4 | | 181 | 9 | 11 | 30 | | | | 13 | 0 | 0 | 0 |
5 | | 16 | 12 | 10 | 193 | | | | 0 | 0 | 0 | 13 |
6 | | 34 | 17 | 130 | 50 | | | | 1 | 0 | 7 | 5 |
7 | | 40 | 141 | 14 | 36 | | | | 0 | 12 | 0 | 1 |
8 | | 189 | 11 | 5 | 26 | | | | 13 | 0 | 0 | 0 |
9 | | 20 | 14 | 9 | 188 | | | | 0 | 1 | 0 | 12 |
10 | | 19 | 13 | 9 | 190 | | | | 0 | 0 | 0 | 13 |