Your Weeder Web Results
NEW: Starting a large job on file /tmp/motif_master/12049_WEEDER/mec3_top20o_u2_3_19.fa
Organism code: CE
Processing both strands
/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/12049_WEEDER/mec3_top20o_u2_3_19.fa CE large S
Searching for motifs of length 6 with 1 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12049_WEEDER/mec3_top20o_u2_3_19.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) GCGAGA 1.84
2) GAGACC 1.78
3) AAGGCG 1.77
4) AAAGGC 1.60
5) ACACTC 1.58
6) AGCGAG 1.57
7) GCGCCT 1.56
8) CTCGCC 1.51
9) AGGGCG 1.49
10) TGCGCC 1.49
Elapsed time : 0 min. 0 sec.
Searching for motifs of length 8 with 2 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12049_WEEDER/mec3_top20o_u2_3_19.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) GCGAGCAC 2.38
2) GGTCTCGC 2.31
3) GGCGGCAC 2.30
4) GTCTCGCC 2.27
5) GCGAACAC 2.18
6) CTACGGTC 2.17
7) TACGCGTA 2.16
8) GCGCCTTT 2.16
9) AGCGAGCA 2.12
10) CGACACTC 2.11
Elapsed time : 0 min. 3 sec.
Searching for motifs of length 10 with 3 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12049_WEEDER/mec3_top20o_u2_3_19.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) GCGTAACCGT 2.90
2) CGAAAGGGCG 2.84
3) GAGCGAAAGG 2.71
4) GCGAACACTC 2.66
5) GGGTCTCGCC 2.64
6) AGCGAGCACA 2.60
7) GCGAAAGGGC 2.60
8) CGTAACCGTA 2.60
9) AGGGCGGCAC 2.57
10) CTACGGTCTC 2.47
Elapsed time : 1 min. 23 sec.
Searching for motifs of length 12 with 4 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12049_WEEDER/mec3_top20o_u2_3_19.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) GAGCGAAAGGGC 4.73
2) AGCGAAAGGGCG 4.72
3) GGGTCTCGCCAC 4.15
4) AGGAGCGAAAGG 4.09
5) CGAAAGGGCGGC 3.99
6) CGCGTAACCGTA 3.98
7) GGAGCGAAAGGG 3.95
8) GCGGCGAGACCC 3.93
9) ATCGCGGCGAGA 3.92
10) ACGCGTAACCGT 3.89
Elapsed time : 11 min. 48 sec.
Your sequences:
Sequence 1 : >ID456159_cr01.sctg11.wum.158.1_upstrea
Sequence 2 : >ID457735_cr01.sctg13.wum.195.1_upstrea
Sequence 3 : >ID470224_cr01.sctg412.wum.3.1_upstream
Sequence 4 : >ID475444_cr01.sctg6.wum.394.1_upstream
Sequence 5 : >ID479465_cr01.sctg9.wum.412.1_upstream
Sequence 6 : >ID486456_CBG08510_upstream_2kb
Sequence 7 : >ID489977_CBG12955_upstream_2kb
Sequence 8 : >ID493197_CBG17385_upstream_2kb
Sequence 9 : >ID497114_CBG22372_upstream_2kb
Sequence 10 : >ID1043663_Y48G8AL.8a_upstream_2kb
Sequence 11 : >ID1049160_C06A8.3_upstream_2kb
Sequence 12 : >ID1057333_Y45F10D.12_upstream_2kb
Sequence 13 : >ID1065528_C03A3.3_upstream_2kb
**** MY ADVICE ****
*** Interesting motifs (highest-ranking) seem to be :
GCGAGA
TCTCGC
5 redundant motifs found:
GTCTCGCC - GGTCTCGC - CTCGCC - AGCGAG - GAGACC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [GAGCGA] 118 (88.17)
1 + .GCGAGA. 120 (100.00)
1 + .GAGAGA. 122 (98.55)
1 + [GCAAAA] 218 (87.83)
1 + [GAAAAA] 334 (86.38)
1 + .GCGAGC. 340 (92.50)
1 + [GCGTAA] 362 (85.01)
1 - [GCGTAA] 358 (85.01)
1 - .GCGGGA. 307 (92.55)
1 - [GAGGAA] 303 (86.49)
1 - .GAAAGA. 300 (90.99)
1 - [GAAAAA] 201 (86.38)
2 + [GAGTGA] 126 (88.17)
2 + [GAAAAA] 155 (86.38)
2 + .GAAAGA. 219 (90.99)
2 + [GCGCGA] 246 (89.62)
2 - [AAGAGA] 281 (87.96)
2 - .GAGAGC. 226 (91.05)
3 + .GGGAAA. 79 (90.53)
3 + [GAAAAA] 186 (86.38)
3 - .GCAAGA. 201 (92.44)
3 - [GAAAAA] 197 (86.38)
3 - [GCAAAA] 160 (87.83)
3 - [GAAAAA] 146 (86.38)
3 - [GAAAAA] 136 (86.38)
3 - [GCGTGA] 129 (89.62)
3 - [GAAAAA] 115 (86.38)
3 - .GAGAGA. 92 (98.55)
3 - .GAGAGA. 90 (98.55)
3 - .GCGAGA. 43 (100.00)
4 + [GAGACA] 43 (88.40)
4 + .GCGAGA. 76 (100.00)
4 + [GAAAAA] 208 (86.38)
4 - [GAAAAA] 199 (86.38)
4 - [GAAAAA] 187 (86.38)
4 - [GAAAAA] 155 (86.38)
4 - .GGGAAA. 149 (90.53)
4 - [GAAAAA] 147 (86.38)
4 - .GCGAAA. 125 (95.39)
5 + [GCGAAC] 59 (87.89)
5 + [GAGCGA] 121 (88.17)
5 + .GCGAAA. 123 (95.39)
5 + [GAGACA] 139 (88.40)
5 - .GAGAGA. 92 (98.55)
5 - .GAGAGA. 83 (98.55)
5 - .GAGGGA. 34 (91.10)
5 - .GGGAGA. 32 (95.13)
5 - .GAGAAA. 30 (93.94)
6 + [GAAAAA] 6 (86.38)
6 + .GCGAGA. 77 (100.00)
6 + [GCGAGG] 86 (89.56)
6 + [GCGAAC] 91 (87.89)
6 - [GAAAAA] 189 (86.38)
6 - .GCGAAA. 180 (95.39)
6 - [AAGAGA] 152 (87.96)
6 - .GAGAAA. 150 (93.94)
6 - [GAAAAA] 148 (86.38)
6 - .GCGAGA. 120 (100.00)
7 + [GAAAAA] 7 (86.38)
7 + [GCGAAC] 59 (87.89)
7 + [GAGCGA] 121 (88.17)
7 + .GCGAAA. 123 (95.39)
7 + .GAGAGA. 139 (98.55)
7 + [GAGACA] 141 (88.40)
7 + [GCGACA] 175 (89.85)
7 - [ACGAGA] 94 (89.41)
7 - .GAGAGA. 92 (98.55)
7 - .GAGAGA. 83 (98.55)
8 + [GAAAAA] 20 (86.38)
8 + .GCGAGC. 26 (92.50)
8 + [GCGTAA] 48 (85.01)
8 - [GCGTAA] 44 (85.01)
9 + .GCAAGA. 76 (92.44)
9 + [AAGAGA] 78 (87.96)
9 + .GAGAGA. 80 (98.55)
9 + .GAGAAA. 82 (93.94)
9 - .GCAAGA. 200 (92.44)
9 - [GAAAAA] 196 (86.38)
9 - [GAAAAA] 158 (86.38)
9 - [GCAAAA] 149 (87.83)
9 - [GCAAAA] 138 (87.83)
9 - [GAAAAA] 115 (86.38)
9 - [GAAAAA] 105 (86.38)
9 - .GAGAGA. 92 (98.55)
9 - .GAGAGA. 90 (98.55)
9 - .GCGAGA. 43 (100.00)
9 - .GCGGGA. 32 (92.55)
9 - .GGGAGA. 30 (95.13)
9 - .GAGAGC. 28 (91.05)
10 + .GCGAAA. 16 (95.39)
10 + [GAAAAA] 18 (86.38)
10 + .GCGAGA. 76 (100.00)
10 + [GAAAAA] 205 (86.38)
10 - [GAAAAA] 199 (86.38)
10 - [GAGTGA] 158 (88.17)
10 - [GAAAAA] 154 (86.38)
10 - [AAGAGA] 150 (87.96)
10 - .GAGAAA. 148 (93.94)
10 - [GAAAAA] 146 (86.38)
10 - .GCGAAA. 125 (95.39)
10 - [GCGCAA] 108 (85.01)
10 - .GCGAAA. 102 (95.39)
10 - .GGGAGA. 48 (95.13)
10 - [GAGAGG] 46 (88.11)
11 + [GAAAAA] 7 (86.38)
11 + [GCGAAC] 57 (87.89)
11 + [GAGCGA] 118 (88.17)
11 + .GCGAAA. 120 (95.39)
11 + .GAGAGA. 136 (98.55)
11 + .GAGAGA. 138 (98.55)
11 + .GAGAGA. 140 (98.55)
11 + [GAGAGG] 154 (88.11)
11 + .GAGGGA. 156 (91.10)
11 + .GGGAGA. 158 (95.13)
11 + .GAGAGA. 160 (98.55)
11 + .GAGAGA. 162 (98.55)
11 + .GAGAAA. 164 (93.94)
11 - .GAAAGA. 241 (90.99)
11 - .GAGGGA. 216 (91.10)
11 - [GAGACA] 90 (88.40)
11 - [GAGACA] 79 (88.40)
11 - .GAGAGA. 71 (98.55)
12 + [GCGCAA] 13 (85.01)
12 + [GAAAAA] 51 (86.38)
12 + .GAGGGA. 78 (91.10)
12 - [GCAAAA] 200 (87.83)
12 - [GAAAAA] 147 (86.38)
12 - [GCAAAA] 138 (87.83)
12 - [GAAAAA] 106 (86.38)
12 - .GCGAGA. 42 (100.00)
13 + [AAGAGA] 19 (87.96)
13 + [GAGCGA] 118 (88.17)
13 + .GCGAGA. 120 (100.00)
13 + .GAGAGA. 122 (98.55)
13 + [GAAAAA] 334 (86.38)
13 + .GCGAGC. 340 (92.50)
13 + [GCGTAA] 362 (85.01)
13 - [GCGTAA] 358 (85.01)
13 - .GCGGGA. 307 (92.55)
13 - [GAGGAA] 303 (86.49)
13 - .GAAAGA. 300 (90.99)
13 - .GGGAGA. 247 (95.13)
13 - [GAGAAC] 245 (86.44)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 0 | 53 | 0 | | | | 0 | 0 | 66 | 0 |
2 | | 18 | 31 | 5 | 0 | | | | 33 | 26 | 7 | 0 |
3 | | 3 | 0 | 51 | 0 | | | | 7 | 0 | 59 | 0 |
4 | | 49 | 1 | 3 | 1 | | | | 59 | 0 | 7 | 0 |
5 | | 8 | 1 | 45 | 0 | | | | 15 | 0 | 51 | 0 |
6 | | 50 | 3 | 1 | 0 | | | | 61 | 5 | 0 | 0 |
GCGAGCAC
GTGCTCGC
3 redundant motifs found:
AGCGAGCACA - AGCGAGCA - GCGAACAC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [GGCTGCAC] 155 (85.21)
1 + [ACGAAAAA] 332 (85.79)
1 + .GCGAGCAC. 340 (100.00)
1 + .GCGTAACC. 362 (90.55)
1 - .GGGAACCC. 246 (92.41)
2 - .GGCAGCAC. 28 (90.28)
3 - [GTGAAAAA] 136 (85.99)
3 - .GCGTGAAC. 127 (94.02)
3 - .GCGAGACC. 41 (97.79)
4 + .GCGAGACC. 76 (97.79)
4 + [GCCTAAAC] 172 (86.24)
4 - [GTGAAAAA] 187 (85.99)
4 - [GCCAAAAA] 166 (85.79)
4 - [GTGAAAAA] 155 (85.99)
4 - [GGGAAAAA] 147 (87.29)
4 - [GTGAGCAG] 89 (89.08)
5 + .GCGAACAC. 59 (97.82)
5 - .ACGCACAC. 150 (90.16)
5 - .GCCCACAC. 112 (90.16)
5 - [GGGAGAAA] 30 (89.47)
6 + [GCCAAAAA] 14 (85.79)
6 + [GGCAGAAC] 39 (89.37)
6 + .GCGAGACC. 77 (97.79)
6 + [AGGCGAAC] 89 (87.31)
6 - [GCCAAAAA] 166 (85.79)
6 - [AGGCGCAC] 108 (88.22)
6 - .GCGCACAC. 106 (95.77)
7 + .GCGAACAC. 59 (97.82)
7 - [AGGAGACC] 69 (88.07)
8 + [ACGAAAAA] 18 (85.79)
8 + .GCGAGCAC. 26 (100.00)
8 + .GCGTAACC. 48 (90.55)
9 + .ACGCGCAC. 9 (92.34)
9 - .GCGAGACC. 41 (97.79)
10 + [ACGCGAAA] 14 (85.91)
10 + .GCGAAAAA. 16 (91.40)
10 + .GCGAGACC. 76 (97.79)
10 - [GTGAAAAA] 154 (85.99)
10 - .GCGAAACC. 100 (95.62)
10 - [GGCAACAC] 40 (88.10)
11 + .GCGAACAC. 57 (97.82)
12 + .GCGCGCAA. 11 (92.43)
12 + [GCGCAACG] 13 (88.05)
12 + [ACGAAAAA] 49 (85.79)
12 - [GTGAAAAA] 106 (85.99)
12 - [AGGCGCAC] 59 (88.22)
12 - .GCGCACAC. 57 (95.77)
12 - .GCGAGACC. 40 (97.79)
12 - .GCGCGCCC. 9 (96.65)
13 + [ACGAAAAA] 332 (85.79)
13 + .GCGAGCAC. 340 (100.00)
13 + .GCGTAACC. 362 (90.55)
13 - .GGGAGAAC. 245 (94.98)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 0 | 20 | 0 | | | | 2 | 0 | 26 | 0 |
2 | | 0 | 18 | 2 | 1 | | | | 0 | 25 | 3 | 0 |
3 | | 0 | 1 | 20 | 0 | | | | 0 | 2 | 26 | 0 |
4 | | 15 | 5 | 0 | 1 | | | | 17 | 7 | 0 | 4 |
5 | | 5 | 0 | 16 | 0 | | | | 13 | 0 | 15 | 0 |
6 | | 8 | 13 | 0 | 0 | | | | 13 | 15 | 0 | 0 |
7 | | 14 | 7 | 0 | 0 | | | | 16 | 12 | 0 | 0 |
8 | | 1 | 19 | 1 | 0 | | | | 2 | 26 | 0 | 0 |
GCGTAACCGT
ACGGTTACGC
3 redundant motifs found:
ACGCGTAACCGT - CGCGTAACCGTA - CGTAACCGTA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [GCCTCGACGA] 13 (86.06)
1 + [GCCAAGTCGA] 227 (86.41)
1 + .GCGTAACCGT. 362 (100.00)
1 - .GCGTAATTGA. 354 (95.20)
1 - [GCGTCGACTT] 170 (87.64)
1 - [GTGCAGCCGT] 153 (88.67)
1 - .GCCTCATCGT. 19 (93.14)
2 + [GTCGAATCGA] 164 (87.47)
2 + [GCAACACTGT] 193 (86.86)
2 + [GTCTGACTGT] 261 (86.23)
2 - [GCAGCACTTT] 25 (85.11)
3 - .GCGTGAACTT. 125 (90.74)
4 + .GCCTAAACTT. 172 (91.94)
5 - [GCCCACACGT] 110 (87.99)
6 + [GCAGAACCCT] 40 (89.11)
6 + [GCCTAAATTT] 172 (89.69)
6 - [GCGAAAATTT] 176 (88.84)
6 - [GCACACTCGA] 102 (86.41)
7 + [GCGACAATTT] 175 (85.90)
8 + .GCGTAACCGT. 48 (100.00)
8 - .GCGTAATTGA. 40 (95.20)
9 + [GCCAAATTTT] 142 (87.09)
9 - [GCGAGACCCA] 39 (86.33)
10 + [GCGAGACCCA] 76 (86.33)
10 - .GCGCAAGCGA. 104 (92.45)
10 - .GCGAAACCGT. 98 (96.20)
12 - [GCGCACACTT] 55 (87.99)
13 + .GCGGCCCCGT. 53 (90.16)
13 + .GCGTAACCGT. 362 (100.00)
13 - .GCGTAATTGA. 354 (95.20)
13 - [GCGTCGACTT] 170 (87.64)
13 - [GTGTCCCCGA] 139 (86.74)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 0 | 14 | 0 | | | | 0 | 0 | 12 | 0 |
2 | | 0 | 13 | 0 | 1 | | | | 0 | 12 | 0 | 0 |
3 | | 1 | 2 | 11 | 0 | | | | 0 | 2 | 10 | 0 |
4 | | 1 | 2 | 2 | 9 | | | | 1 | 1 | 1 | 9 |
5 | | 11 | 2 | 1 | 0 | | | | 9 | 2 | 1 | 0 |
6 | | 12 | 1 | 1 | 0 | | | | 11 | 1 | 0 | 0 |
7 | | 2 | 7 | 1 | 4 | | | | 2 | 5 | 1 | 4 |
8 | | 0 | 11 | 0 | 3 | | | | 0 | 9 | 0 | 3 |
9 | | 0 | 1 | 11 | 2 | | | | 0 | 0 | 10 | 2 |
10 | | 4 | 0 | 0 | 10 | | | | 4 | 0 | 0 | 8 |
GAGCGAAAGGGC
GCCCTTTCGCTC
4 redundant motifs found:
GGAGCGAAAGGG - AGCGAAAGGGCG - GCGAAAGGGC - GAGCGAAAGG -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .GAGCGAGAGATC. 118 (92.38)
2 + [GAACTAAAGTGC] 20 (85.25)
2 + .GATCGGAAAGGC. 110 (90.23)
2 - [AAGAGAAGAGTC] 275 (85.08)
3 - [GAGAGAGAAGAA] 86 (87.02)
4 - [GTGAAAAAGGGA] 151 (87.89)
4 - [GGGAAAAAAGGC] 143 (86.64)
4 - [TAGCGAAATGGA] 121 (88.73)
5 + .GAGCGAAAGGGC. 121 (100.00)
6 - .GAGAAAAAGGCC. 144 (91.08)
7 + .GAGCGAAAGGGC. 121 (100.00)
9 + .GAGAGAAAAGTC. 80 (94.01)
9 - [AAGCGGGAGAGC] 28 (86.36)
9 - [GAGCGGAGTGTC] 20 (88.93)
10 - [GAGTGAAAAAGA] 152 (86.76)
10 - [GTGAAAAAGAGA] 150 (85.51)
10 - .GAGAAAAAGGCC. 142 (91.08)
11 + .GAGCGAAAGGGC. 118 (100.00)
11 + [GAGAGAGAGATA] 136 (88.47)
11 + [GAGAGAGATAGA] 138 (88.72)
11 + [GAGAGATAGAGA] 140 (89.69)
11 + [GATAGAGAGGGA] 150 (88.83)
11 + [GAGAGGGAGAGA] 154 (87.68)
11 + [GAGGGAGAGAGA] 156 (87.63)
11 + .GAGAGAAATGAC. 162 (92.95)
12 - [GAGCGGAGTGTC] 20 (88.93)
13 + .GAGCGAGAGATC. 118 (92.38)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 2 | 1 | 25 | 1 | | | | 0 | 0 | 10 | 0 |
2 | | 24 | 2 | 1 | 2 | | | | 10 | 0 | 0 | 0 |
3 | | 2 | 0 | 24 | 3 | | | | 0 | 0 | 9 | 1 |
4 | | 9 | 17 | 2 | 1 | | | | 4 | 6 | 0 | 0 |
5 | | 5 | 0 | 22 | 2 | | | | 2 | 0 | 8 | 0 |
6 | | 22 | 1 | 5 | 1 | | | | 9 | 0 | 1 | 0 |
7 | | 21 | 0 | 5 | 3 | | | | 8 | 0 | 2 | 0 |
8 | | 24 | 1 | 4 | 0 | | | | 10 | 0 | 0 | 0 |
9 | | 5 | 2 | 16 | 6 | | | | 2 | 0 | 7 | 1 |
10 | | 6 | 2 | 19 | 2 | | | | 2 | 0 | 8 | 0 |
11 | | 3 | 2 | 18 | 6 | | | | 1 | 2 | 4 | 3 |
12 | | 6 | 21 | 1 | 1 | | | | 0 | 10 | 0 | 0 |
*** Interesting motifs (not highest-ranking) can also be :
GAGACC
GGTCTC
2 redundant motifs found:
GGTCTCGC - GCGAGA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [GAGAGA] 122 (88.37)
1 + .GAGATC. 124 (92.43)
1 - [AAGACA] 298 (86.01)
1 - .TAGACC. 108 (92.19)
2 + .GAGACC. 8 (100.00)
2 - .GAGAGC. 226 (92.43)
2 - .AAGACC. 66 (90.08)
3 - [GAGAGA] 92 (88.37)
3 - [GAGAGA] 90 (88.37)
3 - .GAGACC. 41 (100.00)
4 + .GAGACA. 43 (95.93)
4 + .GAGACC. 78 (100.00)
4 - .GAGACC. 100 (100.00)
5 + .GAGACA. 139 (95.93)
5 - [GAGAGA] 92 (88.37)
5 - [GAGAGT] 90 (86.81)
5 - [GAGAGA] 83 (88.37)
5 - .GAGACG. 81 (93.14)
5 - [GATACA] 69 (85.90)
5 - [GAGAAA] 30 (86.26)
5 - .GAGACT. 12 (94.38)
6 + .GAGACC. 79 (100.00)
6 - [GAGAAA] 150 (86.26)
6 - [GAGATT] 118 (86.81)
7 + [GAGAGA] 139 (88.37)
7 + .GAGACA. 141 (95.93)
7 - [GATACC] 192 (89.96)
7 - [GAGAGA] 92 (88.37)
7 - [GAGAGT] 90 (86.81)
7 - [GAGAGA] 83 (88.37)
7 - .GAGACG. 81 (93.14)
7 - .GAGACC. 69 (100.00)
7 - .GAGACT. 12 (94.38)
9 + [GAGAGA] 80 (88.37)
9 + [GAGAAA] 82 (86.26)
9 - [GAGAGA] 92 (88.37)
9 - [GAGAGA] 90 (88.37)
9 - .GAGACT. 88 (94.38)
9 - .GAGACC. 41 (100.00)
9 - .GAGAGC. 28 (92.43)
10 + [GAAACA] 8 (85.90)
10 + .GAGACC. 78 (100.00)
10 - [GAGAAA] 148 (86.26)
10 - [GAAACC] 100 (89.96)
10 - [GAGAGG] 46 (85.58)
11 + [GAGAGA] 136 (88.37)
11 + [GAGAGA] 138 (88.37)
11 + [GAGAGA] 140 (88.37)
11 + [GAGATA] 142 (88.37)
11 + [GAGATA] 148 (88.37)
11 + [GAGAGG] 154 (85.58)
11 + [GAGAGA] 160 (88.37)
11 + [GAGAGA] 162 (88.37)
11 + [GAGAAA] 164 (86.26)
11 - .GAGACA. 90 (95.93)
11 - .GAGACA. 79 (95.93)
11 - [GAGAGA] 71 (88.37)
11 - [GAGATA] 69 (88.37)
11 - [GATACA] 67 (85.90)
12 - .GAGACC. 40 (100.00)
13 + [GAGATG] 21 (85.58)
13 + [GAGAGA] 122 (88.37)
13 + .GAGATC. 124 (92.43)
13 - [AAGACA] 298 (86.01)
13 - .GAGAAC. 245 (90.32)
13 - .TAGACC. 108 (92.19)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 0 | 26 | 2 | | | | 1 | 0 | 24 | 2 |
2 | | 29 | 0 | 0 | 0 | | | | 27 | 0 | 0 | 0 |
3 | | 1 | 0 | 27 | 1 | | | | 0 | 0 | 27 | 0 |
4 | | 29 | 0 | 0 | 0 | | | | 27 | 0 | 0 | 0 |
5 | | 1 | 24 | 2 | 2 | | | | 1 | 22 | 2 | 2 |
6 | | 5 | 19 | 2 | 3 | | | | 5 | 17 | 2 | 3 |
GGTCTCGC
GCGAGACC
4 redundant motifs found:
GGGTCTCGCC - GTCTCGCC - GAGACC - GCGAGA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [GGGTTCCC] 246 (88.70)
1 - .GGTTACGC. 362 (91.69)
1 - .GTGCTCGC. 340 (92.90)
1 - .GATCTCTC. 122 (93.28)
1 - .TCTCTCGC. 120 (91.39)
1 - [TTTCACCC] 66 (85.44)
2 + [GACCTCCC] 10 (85.65)
2 - [GATCACTC] 126 (89.17)
2 - .GGTCTCCA. 6 (91.17)
3 + .GGTCTCGC. 41 (100.00)
3 + [CTTCTCTC] 88 (89.95)
3 + [TCTCTCTC] 90 (88.81)
3 + .GTTCACGC. 127 (92.90)
4 + .GGTCTCCA. 100 (91.17)
4 + [CATTTCGC] 123 (87.20)
4 + [TTTTTCCC] 147 (85.35)
4 - .GGTCTCGC. 76 (100.00)
4 - [TGTCTCCT] 41 (85.15)
5 + [TTTCTCCC] 30 (89.55)
5 + .CGTCTCTC. 81 (92.95)
5 + [ACTCTCTC] 90 (87.90)
5 - [CCTTTCGC] 123 (87.20)
5 - [GTGTTCGC] 59 (88.70)
6 + .AATCTCGC. 118 (90.48)
6 + [TTTTTCTC] 148 (85.76)
6 + [ATTTTCGC] 178 (87.43)
6 - [CGCCTCGC] 86 (88.31)
6 - .GGTCTCGC. 77 (100.00)
7 + [GGTCTCCT] 69 (89.62)
7 + .CGTCTCTC. 81 (92.95)
7 + [ACTCTCTC] 90 (87.90)
7 - .TGTCTCTC. 139 (92.95)
7 - [CCTTTCGC] 123 (87.20)
7 - [GTGTTCGC] 59 (88.70)
8 - .GGTTACGC. 48 (91.69)
8 - .GTGCTCGC. 26 (92.90)
9 + .GCTCTCCC. 28 (92.87)
9 + .GGTCTCGC. 41 (100.00)
9 + .AGTCTCTC. 88 (92.04)
9 + [TCTCTCTC] 90 (88.81)
9 - [CTTTTCTC] 82 (85.76)
9 - [TTTCTCTC] 80 (89.95)
10 + [TGCCTCTC] 44 (85.73)
10 + [CCTCTCCC] 46 (88.40)
10 + .GGTTTCGC. 100 (95.80)
10 + [CATTTCGC] 123 (87.20)
10 + [TTTTTCTC] 146 (85.76)
10 + [TTTCACTC] 156 (85.84)
10 - .GGTCTCGC. 76 (100.00)
10 - [TTTTTCGC] 16 (88.34)
11 + [TATCTCTC] 69 (88.81)
11 + [TGTCTCCA] 79 (86.70)
11 - [TTTCTCTC] 162 (89.95)
11 - [TCTCTCTC] 160 (88.81)
11 - [TCTCTCCC] 158 (88.40)
11 - [TATCTCTC] 140 (88.81)
11 - [TCTCTCTC] 138 (88.81)
11 - [TCTCTCTC] 136 (88.81)
11 - [CCTTTCGC] 120 (87.20)
11 - [GTGTTCGC] 57 (88.70)
12 + [GGGCGCGC] 9 (88.67)
12 + .GGTCTCGC. 40 (100.00)
13 + [GGGTTCTC] 243 (89.11)
13 + .GTTCTCCC. 245 (94.01)
13 - .GGTTACGC. 362 (91.69)
13 - .GTGCTCGC. 340 (92.90)
13 - .GATCTCTC. 122 (93.28)
13 - .TCTCTCGC. 120 (91.39)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 2 | 3 | 22 | 3 | | | | 2 | 2 | 20 | 3 |
2 | | 3 | 3 | 19 | 5 | | | | 3 | 3 | 16 | 5 |
3 | | 0 | 1 | 4 | 25 | | | | 0 | 0 | 3 | 24 |
4 | | 0 | 26 | 0 | 4 | | | | 0 | 23 | 0 | 4 |
5 | | 4 | 0 | 1 | 25 | | | | 4 | 0 | 0 | 23 |
6 | | 0 | 30 | 0 | 0 | | | | 0 | 27 | 0 | 0 |
7 | | 0 | 5 | 19 | 6 | | | | 0 | 4 | 17 | 6 |
8 | | 2 | 27 | 0 | 1 | | | | 2 | 25 | 0 | 0 |
CGAAAGGGCG
CGCCCTTTCG
3 redundant motifs found:
CGAAAGGGCGGC - AGCGAAAGGGCG - GCGAAAGGGC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [AAAATCGGCG] 45 (88.57)
1 + [CTAAACTGAG] 111 (89.57)
1 + .CGAGAGATCG. 121 (94.56)
1 + [AAAAAAGTCG] 166 (88.50)
1 + .CGAAAAAGCG. 333 (98.30)
1 - [GAAATGTGCG] 177 (88.01)
2 + [CTAAAGTGCT] 23 (89.97)
2 + .CAAATGGGTG. 83 (91.79)
2 + .CGGAAAGGCG. 113 (94.73)
2 + [GGAGTGATCG] 125 (86.93)
2 + [AGAAAAAACT] 154 (85.11)
2 + [CGAATGATTT] 171 (85.63)
2 + [CAAGTAAGCA] 186 (87.41)
2 + [CGGAAAGAAG] 217 (86.81)
3 + [AAAAATAACG] 187 (85.26)
3 - [AAAAACGGTG] 141 (88.82)
3 - [GAAAAATGCG] 132 (89.32)
3 - [CAAAAAAGAT] 103 (87.30)
3 - [GGAGAGAGAA] 89 (86.71)
4 + [CTAAACTTTG] 174 (86.15)
4 - [AAAAACAGCA] 182 (87.04)
4 - [AAAAAGGGAA] 150 (86.96)
4 - [AATAATAGCG] 128 (85.26)
4 - .CGAAATGGAA. 120 (90.04)
4 - [ATTAAAGGCG] 111 (86.71)
4 - [CGGAAAAGTA] 27 (88.07)
5 + .CGTGTGGGCG. 111 (91.07)
5 + .CGAAAGGGCG. 124 (100.00)
5 + .CAAGAAAGTG. 143 (91.56)
5 + .AGAAAGTGTG. 145 (93.12)
5 + [AAAGTGTGCG] 147 (88.57)
5 - [AGAGTGTTCG] 60 (87.76)
6 + .CGAGTGTGCG. 103 (94.81)
6 - [GAAAAAATCG] 185 (86.39)
6 - [CGAAAATTTA] 175 (87.12)
6 - [CAAAAATGTT] 162 (86.81)
6 - [AAAATGTTCG] 160 (85.90)
6 - [AGAGAAAAAG] 147 (85.99)
6 - [AATAATGGCG] 130 (85.59)
6 - [ATTAAAGGCG] 111 (86.71)
6 - [AGAGAATTCA] 26 (85.18)
7 + .CGAGTGGGAG. 111 (93.18)
7 + .CGAAAGGGCG. 124 (100.00)
7 + [AGAGACAGTA] 140 (86.46)
7 + [ATAGTGTGAG] 151 (85.00)
7 + [AGTGTGAGTG] 153 (85.14)
7 - [AGAATGAGTA] 214 (87.49)
7 - .CGAGAGAGTG. 89 (96.01)
7 - .CGAGTGTTCG. 60 (90.91)
8 + .CGAAAAAGCG. 19 (98.30)
9 + [CAAGAGAGAA] 77 (88.57)
9 + [AGAAAAGTCT] 83 (86.56)
9 + .CGAAATTGCA. 176 (91.67)
9 - [AAAAATTGCA] 152 (85.43)
9 - [CAAAAATTTG] 144 (87.93)
9 - [CGAAAAAATT] 102 (85.82)
9 - .CGGGAGAGCG. 27 (94.56)
10 + .CGAAACAACG. 7 (92.16)
10 + [CGAAAAATTA] 17 (88.07)
10 + .CTAAAATGCG. 173 (93.61)
10 + [CGAAAAATAA] 204 (87.61)
10 - [CGAAAAAAAA] 196 (86.48)
10 - .AAAAACGGCG. 181 (91.26)
10 - [CAAAATTGAG] 161 (89.57)
10 - [AAAAAGAGAA] 149 (86.64)
10 - [AGAGAAAAAG] 145 (85.99)
10 - [AAAATAATCG] 130 (85.48)
10 - [CGAAATGTAT] 120 (85.02)
11 + [CGTGTGGGAG] 108 (88.16)
11 + .CGAAAGGGCG. 121 (100.00)
11 + .AGAGAGAGAG. 135 (92.38)
11 + [AGAGAGAGAT] 137 (87.37)
11 + [AGAGAGATAG] 139 (88.49)
11 + [AGAGATAGAG] 141 (89.23)
11 + [AGAGATAGAG] 147 (89.23)
11 + .AGAGAGGGAG. 153 (92.71)
11 + [AGGGAGAGAG] 157 (88.49)
11 + [GGAGAGAGAA] 159 (86.71)
11 - .AGAAAGAGTA. 238 (90.18)
11 - [AGAAATAGTT] 198 (85.90)
12 + .CGAAAAAGTG. 50 (95.86)
12 + .AAAAAGTGTG. 52 (90.04)
12 + [AAAGTGTGCG] 54 (88.57)
12 + [CGTAAAGTAG] 123 (86.81)
12 - [AAAAATAACG] 194 (85.26)
12 - [AAAAACAACG] 153 (85.92)
13 + [ATAGAAAACG] 43 (85.16)
13 + [GAAAACGGCG] 46 (89.48)
13 + .CTAAAATGAG. 111 (90.70)
13 + .AAAATGAGCG. 113 (90.75)
13 + .CGAGAGATCG. 121 (94.56)
13 + [AAAAAAGTCG] 166 (88.50)
13 + .CGAAAAAGCG. 333 (98.30)
13 - [GAAATGTGCG] 177 (88.01)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 3 | 21 | 1 | 0 | | | | 7 | 23 | 0 | 0 |
2 | | 3 | 0 | 20 | 2 | | | | 5 | 0 | 23 | 2 |
3 | | 22 | 0 | 2 | 1 | | | | 27 | 0 | 2 | 1 |
4 | | 17 | 0 | 8 | 0 | | | | 19 | 0 | 11 | 0 |
5 | | 21 | 0 | 0 | 4 | | | | 24 | 0 | 0 | 6 |
6 | | 6 | 3 | 14 | 2 | | | | 8 | 2 | 18 | 2 |
7 | | 9 | 0 | 11 | 5 | | | | 13 | 0 | 10 | 7 |
8 | | 1 | 0 | 22 | 2 | | | | 1 | 0 | 26 | 3 |
9 | | 3 | 18 | 0 | 4 | | | | 5 | 18 | 0 | 7 |
10 | | 2 | 0 | 22 | 1 | | | | 3 | 0 | 27 | 0 |
AGCGAAAGGGCG
CGCCCTTTCGCT
4 redundant motifs found:
CGAAAGGGCGGC - GAGCGAAAGGGC - GCGAAAGGGC - CGAAAGGGCG -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [AGAAAATCGGCG] 43 (87.99)
1 + .AGCGAGAGATCG. 119 (94.06)
1 + .TACGAAAAAGCG. 331 (91.70)
2 + [AACTAAAGTGCT] 21 (85.20)
2 + [AGAAAATGGTCT] 59 (86.43)
2 + .ATCGGAAAGGCG. 111 (92.42)
2 + [AAAAAACTGTCG] 156 (85.49)
2 + [AACGGAAAGAAG] 215 (85.80)
2 - .AGAGAAGAGTCG. 274 (93.76)
3 - .AGAAAAACGGTG. 141 (90.02)
4 - .AGAAAAAAACCG. 194 (90.46)
4 - .AGCGAAATGGAA. 120 (90.63)
5 + [AGCGAACACTCT] 58 (87.14)
5 + .AGCGAAAGGGCG. 122 (100.00)
6 - [AGAGAAAAAGGC] 145 (86.20)
6 - [AGAAAAAGGCCT] 143 (89.53)
6 - [AAAATAATGGCG] 130 (85.72)
6 - [AGATTAAAGGCG] 111 (88.42)
7 + [AGCGAACACTCG] 58 (89.77)
7 + .AGCGAAAGGGCG. 122 (100.00)
8 + .TACGAAAAAGCG. 17 (91.70)
9 + .AGAGAAAAGTCT. 81 (94.23)
9 - [TGAAAAAACTCG] 110 (86.36)
9 - .AGCGGGAGAGCG. 27 (92.81)
9 - .AGCGGAGTGTCG. 19 (90.49)
10 - [TAAAAAACGGCG] 181 (86.95)
10 - .AGTGAAAAAGAG. 151 (90.06)
10 - [AGAGAAAAAGGC] 143 (86.20)
10 - [AGAAAAAGGCCC] 141 (86.68)
10 - [AGCGAAACCGTA] 97 (85.71)
10 - [AGCGATGGGTCT] 79 (88.33)
11 + .AGCGAAAGGGCG. 119 (100.00)
11 + [AGAGAGAGAGAT] 135 (88.80)
11 + [AGAGAGAGATAG] 137 (89.89)
11 + [AGAGAGATAGAG] 139 (89.34)
11 + [AGAGATAGAGAT] 141 (87.57)
11 + [AGATAGAGATAG] 143 (85.56)
11 + [ATAGAGATAGAG] 145 (85.00)
11 + .AGAGATAGAGAG. 147 (90.20)
11 + [ATAGAGAGGGAG] 151 (88.33)
11 + [AGAGAGGGAGAG] 153 (88.33)
11 + [AGAGGGAGAGAG] 155 (88.65)
11 + [AGAGAAATGACT] 163 (88.92)
11 - [AGAGAGATACAG] 66 (85.34)
11 - [AGAGATACAGTG] 64 (87.09)
12 + .AACGAAAAAGTG. 48 (92.06)
12 - .AGCGGAGTGTCG. 19 (90.49)
13 + [AGAGATGAGGCA] 20 (86.63)
13 + .AGCGAGAGATCG. 119 (94.06)
13 + .TACGAAAAAGCG. 331 (91.70)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 27 | 0 | 0 | 3 | | | | 17 | 0 | 0 | 3 |
2 | | 5 | 0 | 23 | 2 | | | | 4 | 0 | 15 | 1 |
3 | | 10 | 19 | 0 | 1 | | | | 5 | 14 | 0 | 1 |
4 | | 5 | 0 | 23 | 2 | | | | 2 | 0 | 18 | 0 |
5 | | 24 | 0 | 5 | 1 | | | | 16 | 0 | 4 | 0 |
6 | | 24 | 0 | 4 | 2 | | | | 16 | 0 | 3 | 1 |
7 | | 23 | 2 | 4 | 1 | | | | 17 | 0 | 3 | 0 |
8 | | 10 | 3 | 13 | 4 | | | | 9 | 1 | 7 | 3 |
9 | | 9 | 2 | 18 | 1 | | | | 10 | 0 | 10 | 0 |
10 | | 1 | 2 | 19 | 8 | | | | 0 | 1 | 13 | 6 |
11 | | 4 | 22 | 1 | 3 | | | | 3 | 15 | 0 | 2 |
12 | | 2 | 1 | 22 | 5 | | | | 1 | 0 | 18 | 1 |
AAGGCG
CGCCTT
6 redundant motifs found:
GCGCCTTT - AGGGCG - TGCGCC - CTCGCC - GCGCCT - AAAGGC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [AAATCG] 46 (87.61)
1 + [AAAGCC] 135 (86.22)
1 + [AAGCCG] 136 (88.61)
1 + [ACAGCG] 143 (86.76)
1 + .AAGTCG. 170 (93.25)
1 + .AAGTCG. 230 (93.25)
1 + .AAAGCG. 337 (94.35)
2 + .AAGGCG. 117 (100.00)
2 + [AGGTCG] 205 (86.62)
3 + [ACAGCG] 8 (86.76)
3 - [AAAACG] 195 (85.29)
3 - [AAAACG] 144 (85.29)
3 - .AATGCG. 132 (92.64)
3 - .AAGGCG. 62 (100.00)
3 - .ACGGCG. 29 (92.40)
4 + [AAATCG] 57 (87.61)
4 + .AATGCG. 107 (92.64)
4 - .AAGGCC. 142 (91.87)
4 - .AAGGCG. 111 (100.00)
5 + .AGGGCG. 128 (93.37)
5 + .AAAGCG. 168 (94.35)
5 - [AAATCG] 26 (87.61)
6 + [AAAACG] 9 (85.29)
6 + [AAATCG] 58 (87.61)
6 + [GAGGCG] 88 (88.00)
6 + [AATTCG] 126 (85.90)
6 - [AAATCG] 185 (87.61)
6 - .AAGGCC. 144 (91.87)
6 - [ATGGCG] 130 (88.72)
6 - .AAGGCG. 111 (100.00)
7 + .AGGGCG. 128 (93.37)
7 + .AAAGCG. 172 (94.35)
7 - .AAGACG. 207 (90.93)
7 - [AAGGAG] 72 (88.00)
7 - [AAATCG] 26 (87.61)
8 + .AAAGCG. 23 (94.35)
9 + .AACGCG. 8 (91.28)
9 - [AAAACG] 194 (85.29)
9 - .AAGGCG. 62 (100.00)
9 - [AGAGCG] 27 (87.72)
9 - [AGTGCG] 12 (86.01)
10 + .AACGCG. 13 (91.28)
10 + [AAATCG] 57 (87.61)
10 + .AATGCG. 177 (92.64)
10 - [AAAACG] 184 (85.29)
10 - .ACGGCG. 181 (92.40)
10 - .AAGGCC. 142 (91.87)
10 - .AAGGCG. 111 (100.00)
11 + .AGGGCG. 125 (93.37)
11 - .AAGACG. 228 (90.93)
11 - [AAATCG] 26 (87.61)
12 + .AGGGCG. 8 (93.37)
12 - [AAAACG] 113 (85.29)
12 - .AAGGCG. 62 (100.00)
13 + [AAAACG] 47 (85.29)
13 + .ACGGCG. 50 (92.40)
13 + .AAGTCG. 136 (93.25)
13 + [ACTGCG] 147 (85.05)
13 + .AAGTCG. 170 (93.25)
13 + .AAAGCG. 337 (94.35)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 36 | 0 | 1 | 0 | | | | 33 | 0 | 0 | 0 |
2 | | 29 | 3 | 4 | 1 | | | | 26 | 3 | 4 | 0 |
3 | | 5 | 2 | 27 | 3 | | | | 5 | 2 | 23 | 3 |
4 | | 2 | 1 | 30 | 4 | | | | 2 | 0 | 27 | 4 |
5 | | 1 | 36 | 0 | 0 | | | | 0 | 33 | 0 | 0 |
6 | | 0 | 3 | 34 | 0 | | | | 0 | 3 | 30 | 0 |
GAGCGAAAGG
CCTTTCGCTC
4 redundant motifs found:
GGAGCGAAAGGG - AGGAGCGAAAGG - GAGCGAAAGGGC - GCGAAAGGGC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .GAGCGAGAGA. 118 (95.01)
1 - .GTGCGGGAGG. 305 (91.38)
2 + [GATCGGAAAG] 110 (88.37)
2 + [GAACAAACGG] 210 (85.10)
2 + [GCGCGATGGG] 246 (86.27)
3 - [GTGAAAAATG] 134 (87.51)
3 - .GAGAGAGAAG. 88 (93.46)
3 - [GAGAGAAGAA] 86 (87.58)
4 - .GTGAAAAAGG. 153 (90.98)
4 - .TAGCGAAATG. 123 (90.40)
4 - [GAATTAAAGG] 113 (85.43)
4 - [GAGCAGACGG] 85 (87.13)
5 + .GAGCGAAAGG. 121 (100.00)
5 - [GAGAGAGTTG] 88 (86.01)
6 - [GTTCGAAAAG] 155 (87.62)
6 - .GAGAAAAAGG. 146 (94.79)
7 + .GAGTGGGAGG. 112 (91.63)
7 + .GAGCGAAAGG. 121 (100.00)
7 + [GAGAGACAGT] 139 (87.06)
7 - [GAGTAGAAGA] 209 (86.24)
7 - [GAGAGAGTGG] 88 (89.48)
7 - [GAGTGGAGAG] 84 (85.52)
9 + .GAGAGAAAAG. 80 (95.21)
9 - [GAGAGAGACT] 88 (86.66)
9 - [GAGCGGAGTG] 22 (89.08)
10 - [GAGTGAAAAA] 154 (89.72)
10 - [GTGAAAAAGA] 152 (87.73)
10 - .GAGAAAAAGG. 144 (94.79)
10 - [TCGCGAAATG] 123 (85.45)
11 + [GTGTGGGAGG] 109 (87.82)
11 + .GAGCGAAAGG. 118 (100.00)
11 + [CAGAGAGAGA] 134 (86.02)
11 + .GAGAGAGAGA. 136 (93.69)
11 + .GAGAGAGATA. 138 (90.22)
11 + .GAGAGATAGA. 140 (91.02)
11 + [GAGATAGAGA] 142 (87.77)
11 + [GATAGAGATA] 144 (85.12)
11 + [GAGATAGAGA] 148 (87.77)
11 + .GATAGAGAGG. 150 (91.84)
11 + .GAGAGGGAGA. 154 (90.62)
11 + [GAGGGAGAGA] 156 (88.38)
11 + .GAGAGAGAAA. 160 (90.22)
11 + .GAGAGAAATG. 162 (95.21)
11 - [GAGAGATACA] 67 (85.53)
12 - [GAGCGGAGTG] 22 (89.08)
13 + .GAGCGAGAGA. 118 (95.01)
13 + [GTGTGAAAGT] 130 (87.85)
13 - .GTGCGGGAGG. 305 (91.38)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 1 | 32 | 2 | | | | 0 | 0 | 20 | 1 |
2 | | 28 | 3 | 0 | 5 | | | | 18 | 0 | 0 | 3 |
3 | | 3 | 0 | 30 | 3 | | | | 0 | 0 | 20 | 1 |
4 | | 11 | 20 | 1 | 4 | | | | 12 | 8 | 0 | 1 |
5 | | 5 | 0 | 29 | 2 | | | | 3 | 0 | 18 | 0 |
6 | | 28 | 1 | 7 | 0 | | | | 17 | 0 | 4 | 0 |
7 | | 22 | 1 | 10 | 3 | | | | 9 | 0 | 11 | 1 |
8 | | 29 | 2 | 4 | 1 | | | | 21 | 0 | 0 | 0 |
9 | | 5 | 2 | 24 | 5 | | | | 3 | 0 | 15 | 3 |
10 | | 6 | 1 | 26 | 3 | | | | 7 | 0 | 14 | 0 |
AAAGGC
GCCTTT
3 redundant motifs found:
GCGCCTTT - GCGCCT - AAGGCG -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATGGC. 6 (91.91)
1 + .AAATGC. 35 (93.15)
1 + [AAAATC] 45 (88.77)
1 + [AAAGCC] 135 (88.38)
1 + .AAAGTC. 169 (94.28)
1 + [AAAATC] 220 (88.77)
1 + .AAAAGC. 336 (94.48)
1 - .AAAGAC. 299 (90.67)
1 - [AAAAAC] 200 (85.15)
2 + [AAAGTG] 25 (86.78)
2 + [AAGTGC] 26 (85.05)
2 + [AAATGG] 62 (85.65)
2 + [AAATGG] 84 (85.65)
2 + .AAAGGC. 116 (100.00)
2 + [AAAAAC] 157 (85.15)
2 + [AAGGTC] 204 (86.19)
2 + [AAATTC] 232 (87.43)
2 + [AATGTC] 239 (86.19)
3 + [AACAGC] 7 (85.05)
3 + [AAAATC] 100 (88.77)
3 - [AAAAAC] 196 (85.15)
3 - [AAAATC] 154 (88.77)
3 - [AAAAAC] 145 (85.15)
3 - .AAATGC. 133 (93.15)
3 - [AAAAAC] 113 (85.15)
3 - .AAAGGC. 63 (100.00)
4 + [AATGTC] 11 (86.19)
4 + [AAAATC] 18 (88.77)
4 - [AAAAAC] 196 (85.15)
4 - [AAAAAC] 186 (85.15)
4 - [AACAGC] 183 (85.05)
4 - [AAAAAC] 165 (85.15)
4 - [AAAAGG] 153 (86.98)
4 - .AAAGGG. 152 (92.50)
4 - [AAAAGG] 144 (86.98)
4 - .AAAGGC. 143 (100.00)
4 - [AATAGC] 129 (86.39)
4 - [AAATGG] 122 (85.65)
4 - .AAAGGC. 112 (100.00)
5 + .AAAGTC. 10 (94.28)
5 + [AAATTC] 18 (87.43)
5 + .AAAGGG. 126 (92.50)
5 + .AAGGGC. 127 (91.91)
5 + [AAAGTG] 147 (86.78)
5 + .AAAAGC. 167 (94.48)
5 - [AAAATC] 27 (88.77)
6 + [AAAAAC] 8 (85.15)
6 + [AAACGC] 10 (88.58)
6 + [AAAATC] 18 (88.77)
6 - [AAAATC] 186 (88.77)
6 - [AAAAGG] 146 (86.98)
6 - .AAAGGC. 145 (100.00)
6 - .AATGGC. 131 (91.91)
6 - [AATTGC] 124 (85.05)
6 - .AAAGGC. 112 (100.00)
7 + .AAAGTC. 10 (94.28)
7 + [AAATTC] 18 (87.43)
7 + .AAAGGG. 126 (92.50)
7 + .AAGGGC. 127 (91.91)
7 + .AAAAGC. 171 (94.48)
8 + .AAAAGC. 22 (94.48)
9 + .AAAGTC. 86 (94.28)
9 + [AATTGC] 179 (85.05)
9 - [AAAAAC] 195 (85.15)
9 - [AATTGC] 153 (85.05)
9 - .AAAAGC. 135 (94.48)
9 - [AAAATC] 126 (88.77)
9 - [AAAAAC] 113 (85.15)
9 - .AAAGGC. 63 (100.00)
10 + [AAAATC] 29 (88.77)
10 + .AAATGC. 176 (93.15)
10 - [AAAAAC] 195 (85.15)
10 - [AAAAAC] 185 (85.15)
10 - .AACGGC. 182 (90.57)
10 - [AAAAGG] 144 (86.98)
10 - .AAAGGC. 143 (100.00)
10 - .AAAGGC. 112 (100.00)
10 - [AGAGGC] 45 (87.69)
11 + [AAATTC] 18 (87.43)
11 + .AAAGGG. 123 (92.50)
11 + .AAGGGC. 124 (91.91)
11 - [AAAATC] 27 (88.77)
12 + [AAAGTG] 54 (86.78)
12 - [AAAATC] 185 (88.77)
12 - [AAAAAC] 157 (85.15)
12 - [AAAAAC] 146 (85.15)
12 - [AAAAAC] 136 (85.15)
12 - [AAAAAC] 114 (85.15)
12 - .AAAGGC. 63 (100.00)
13 + .AATGGC. 6 (91.91)
13 + .AAATGC. 37 (93.15)
13 + .AACGGC. 49 (90.57)
13 + .AAAGTC. 135 (94.28)
13 + .AAAGTC. 169 (94.28)
13 + .AAAAGC. 336 (94.48)
13 - .AAAGAC. 299 (90.67)
13 - [AATGTC] 260 (86.19)
13 - [AAAAAC] 200 (85.15)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 43 | 0 | 0 | 0 | | | | 40 | 0 | 0 | 0 |
2 | | 42 | 0 | 1 | 0 | | | | 40 | 0 | 0 | 0 |
3 | | 35 | 2 | 3 | 3 | | | | 32 | 2 | 3 | 3 |
4 | | 6 | 1 | 32 | 4 | | | | 6 | 0 | 30 | 4 |
5 | | 2 | 1 | 34 | 6 | | | | 2 | 0 | 32 | 6 |
6 | | 0 | 39 | 4 | 0 | | | | 0 | 36 | 4 | 0 |
GTCTCGCC
GGCGAGAC
4 redundant motifs found:
GGGTCTCGCC - GGTCTCGC - CTCGCC - GCGAGA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [GCCTCGAC] 13 (86.74)
1 + .GTCTTTCC. 299 (92.54)
1 - .CTCTCGCT. 119 (92.16)
1 - [GTTTCACC] 67 (89.71)
2 - [GTGTCCCA] 252 (86.57)
2 - [GTGTTGCT] 192 (85.58)
2 - [GCCTTTCC] 114 (86.35)
2 - [GTCTCCAC] 5 (89.05)
3 + .GTCTCGCC. 42 (100.00)
3 + [TTCTCTCT] 89 (85.87)
3 + .CTCTCTCC. 91 (95.25)
4 - .GTCTCGCC. 75 (100.00)
4 - .GTGTCTCC. 42 (94.85)
5 + .GTCTCTCA. 82 (93.06)
5 + [CTCTCTCA] 91 (89.58)
5 - [GTCTCTGT] 136 (85.52)
5 - .GTGCCGCC. 130 (90.01)
5 - [CTTTCGCT] 122 (86.49)
6 + [ATCTCGCA] 119 (85.82)
6 - [GCCTCGCG] 85 (85.31)
6 - .GTCTCGCC. 76 (100.00)
7 + .GTCTCTCC. 82 (98.73)
7 + [CTCTCCAC] 84 (85.56)
7 + [CTCTCTCG] 91 (86.74)
7 + [CTCTCGTC] 93 (89.44)
7 - [CTGTCTCT] 140 (87.01)
7 - .GTCTCTCT. 138 (94.38)
7 - .GTGCCGCC. 130 (90.01)
7 - [CTTTCGCT] 122 (86.49)
9 + [CTCCCGCT] 31 (86.06)
9 + .GTCTCGCC. 42 (100.00)
9 + .GTCTCTCT. 89 (94.38)
9 + .CTCTCTCC. 91 (95.25)
9 - [TTCTCTCT] 79 (85.87)
10 + [GTGTTGCC] 40 (89.93)
10 + .GCCTCTCC. 45 (92.54)
10 + .CTCTCCCC. 47 (92.64)
10 + [GTTTCGCT] 101 (89.98)
10 - .GTCTCGCC. 75 (100.00)
11 + [ATCTCTCT] 70 (85.87)
11 + [ATGTCTCC] 78 (86.34)
11 + [CTGTCTCA] 89 (85.69)
11 + [GTCTCATC] 91 (88.30)
11 - [TTCTCTCT] 161 (85.87)
11 - .CTCTCTCC. 159 (95.25)
11 - [CTCTCCCT] 157 (88.28)
11 - [ATCTCTCT] 139 (85.87)
11 - .CTCTCTCT. 137 (90.89)
11 - .CTCTCTCT. 135 (90.89)
11 - .GTGCCGCC. 127 (90.01)
11 - [CTTTCGCT] 119 (86.49)
12 + .GTCTCGCA. 41 (94.33)
12 + [GTTTTTCC] 146 (86.87)
13 + [TTCTCCCC] 246 (87.61)
13 + .GTCTTTCC. 299 (92.54)
13 - .GTGTCCCC. 141 (92.24)
13 - .CTCTCGCT. 119 (92.16)
13 - [GTTTCACC] 67 (89.71)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 7 | 27 | 1 | | | | 0 | 8 | 18 | 0 |
2 | | 0 | 3 | 0 | 33 | | | | 0 | 1 | 0 | 25 |
3 | | 0 | 27 | 6 | 3 | | | | 0 | 21 | 5 | 0 |
4 | | 0 | 3 | 1 | 32 | | | | 0 | 3 | 0 | 23 |
5 | | 0 | 33 | 0 | 3 | | | | 0 | 24 | 0 | 2 |
6 | | 3 | 4 | 18 | 11 | | | | 0 | 2 | 11 | 13 |
7 | | 2 | 31 | 1 | 2 | | | | 0 | 26 | 0 | 0 |
8 | | 3 | 27 | 1 | 5 | | | | 2 | 18 | 0 | 6 |
AGGAGCGAAAGG
CCTTTCGCTCCT
2 redundant motifs found:
GGAGCGAAAGGG - GAGCGAAAGG -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [AGTAGCAAATGC] 29 (86.06)
1 + [CTGAGCGAGAGA] 116 (87.08)
1 - .AGGAAAGACATG. 296 (90.21)
2 + [ATGAACTAAAGT] 18 (85.63)
2 + [CGGATCGGAAAG] 108 (85.93)
3 - [CGGTGAAAAATG] 134 (85.99)
3 - .AGGAGAGAGAAG. 88 (93.91)
4 - [AAGGGAAAAAAG] 145 (86.33)
4 - [AGGGAAAAAAGG] 144 (88.11)
4 - .AATAGCGAAATG. 123 (93.07)
5 + .CGGAGCGAAAGG. 119 (96.96)
5 - [ATGAGAGAGTTG] 88 (88.11)
6 - .AAGAGAAAAAGG. 146 (94.93)
7 + .AGGAGCGAAAGG. 119 (100.00)
7 + [CAGAGAGACAGT] 137 (85.17)
7 - [ACGAGAGAGTGG] 88 (87.20)
9 + .AAGAGAGAAAAG. 78 (94.60)
9 - [AGGAGAGAGACT] 88 (87.98)
10 - .AAGAGAAAAAGG. 144 (94.93)
10 - [AATCGCGAAATG] 123 (89.19)
11 + .AGGAGCGAAAGG. 116 (100.00)
11 + [CAGAGAGAGAGA] 134 (86.95)
11 + [GAGATAGAGAGG] 148 (85.70)
11 + .GAGAGAGAAATG. 160 (91.00)
12 - [TGGAGCGGAGTG] 22 (85.19)
13 + [AGTAGCAAATGC] 31 (86.06)
13 + .ATGAGCGAGAGA. 116 (90.12)
13 - .AGGAAAGACATG. 296 (90.21)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 19 | 4 | 2 | 2 | | | | 10 | 1 | 1 | 0 |
2 | | 6 | 1 | 16 | 4 | | | | 5 | 0 | 6 | 1 |
3 | | 1 | 1 | 21 | 4 | | | | 0 | 0 | 11 | 1 |
4 | | 22 | 3 | 1 | 1 | | | | 12 | 0 | 0 | 0 |
5 | | 5 | 0 | 20 | 2 | | | | 2 | 0 | 10 | 0 |
6 | | 10 | 16 | 0 | 1 | | | | 7 | 5 | 0 | 0 |
7 | | 6 | 0 | 19 | 2 | | | | 2 | 0 | 10 | 0 |
8 | | 23 | 1 | 3 | 0 | | | | 12 | 0 | 0 | 0 |
9 | | 19 | 2 | 5 | 1 | | | | 8 | 2 | 2 | 0 |
10 | | 22 | 0 | 2 | 3 | | | | 12 | 0 | 0 | 0 |
11 | | 4 | 2 | 15 | 6 | | | | 2 | 0 | 6 | 4 |
12 | | 2 | 2 | 21 | 2 | | | | 1 | 0 | 11 | 0 |
GCGAACAC
GTGTTCGC
2 redundant motifs found:
GCGAACACTC - GCGAGCAC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [ACGCACAT] 176 (86.29)
1 + .TCGAACTC. 205 (93.89)
1 + [GCAAAATC] 218 (87.24)
1 + [GCCAAGTC] 227 (87.24)
1 + [TCCCGCAC] 307 (86.65)
1 + [ACGAAAAA] 332 (87.24)
1 + .GCGAGCAC. 340 (95.83)
1 + [GAGCACAA] 342 (87.50)
1 + [GCACAAAC] 344 (87.59)
1 - .GCCAACTC. 376 (93.35)
1 - .GGGAACCC. 246 (92.11)
1 - .TCGAAAAA. 201 (90.47)
2 + [AGCAACAC] 192 (86.38)
2 + .TCGAACAA. 208 (93.79)
2 + [TGGGACAC] 252 (86.92)
2 - [TCGCAGAC] 269 (88.13)
2 - .GCGCAGAC. 242 (91.01)
2 - [GCGAATCT] 51 (85.37)
2 - [GGCAGCAC] 28 (88.32)
3 - [GCAAAAAA] 158 (87.14)
3 - [GCGAGACC] 41 (88.69)
4 + [GCGAGACC] 76 (88.69)
4 + [TGGAAAAA] 206 (86.38)
4 - [GCCAAAAA] 166 (89.92)
4 - [GGGAAAAA] 147 (89.26)
4 - [GCCCAAAA] 137 (87.04)
5 + [GCCAACTT] 49 (88.63)
5 + .GCGAACAC. 59 (100.00)
5 - .ACGCACAC. 150 (91.01)
5 - .GCCCACAC. 112 (93.70)
5 - [GGGAGAAA] 30 (85.09)
5 - [GAGAAAAT] 28 (85.66)
6 + [GCCAAAAA] 14 (89.92)
6 + [GCGAGACC] 77 (88.69)
6 + .GCGAACTA. 91 (93.44)
6 + .TCGAACAT. 159 (92.40)
6 - .GCGAAAAT. 178 (91.95)
6 - [GCCAAAAA] 166 (89.92)
6 - [GAGAAAAA] 148 (87.05)
6 - .GCGCACAC. 106 (97.12)
6 - [GCACACTC] 104 (87.69)
7 + [GCCAACTT] 49 (88.63)
7 + .GCGAACAC. 59 (100.00)
7 - [TCCCACTC] 112 (87.59)
8 + [ACGAAAAA] 18 (87.24)
8 + .GCGAGCAC. 26 (95.83)
8 + [GAGCACAA] 28 (87.50)
8 + [GCACAAAC] 30 (87.59)
8 - .GCCAACTC. 62 (93.35)
9 + [ACGCGCAC] 9 (86.84)
9 + .GCGCACTA. 11 (90.56)
9 + [GCCAAATT] 142 (85.30)
9 + [TCGAAATT] 175 (85.85)
9 - .TCGAACAA. 171 (93.79)
9 - [GCAAAAAT] 147 (85.75)
9 - [GGCAAAAA] 137 (85.84)
9 - .TCGAAAAA. 105 (90.47)
9 - [GCGAGACC] 41 (88.69)
10 + .GCGAAAAA. 16 (93.35)
10 + [GCGAGACC] 76 (88.69)
10 + [GCGGACTA] 91 (87.33)
10 + .TCGAAAAA. 203 (90.47)
10 - .TCGAAAAA. 199 (90.47)
10 - [GCCAAAAT] 165 (88.53)
10 - [GAGAAAAA] 146 (87.05)
10 - [GCCCAAAA] 137 (87.04)
10 - .GCGAAACC. 100 (92.87)
10 - .GGCAACAC. 40 (92.49)
11 + .GCGAACAC. 57 (100.00)
11 - .TCCCACAC. 109 (90.82)
12 + [GCGCGCAA] 11 (89.62)
12 + [ACGAAAAA] 49 (87.24)
12 + [GGGAATAT] 80 (85.09)
12 - [GCAAAAAT] 198 (85.75)
12 - [TCAAAAAC] 157 (87.59)
12 - [GGAAAAAC] 146 (86.38)
12 - [GGCAAAAA] 137 (85.84)
12 - .GCAAAAAC. 136 (90.47)
12 - .GCGCACAC. 57 (97.12)
12 - [GCGAGACC] 40 (88.69)
12 - [GCGCGCCC] 9 (89.14)
13 + [TAGAAAAC] 44 (87.50)
13 + [GGGGACAC] 141 (89.80)
13 + [ACGCACAT] 176 (86.29)
13 + [TAGAACTC] 205 (87.60)
13 + [TCCCGCAC] 307 (86.65)
13 + .TCGAATAC. 321 (91.01)
13 + [ACGAAAAA] 332 (87.24)
13 + .GCGAGCAC. 340 (95.83)
13 + [GAGCACAA] 342 (87.50)
13 + [GCACAAAC] 344 (87.59)
13 - [GGGAGAAC] 245 (88.41)
13 - [GAGAACCC] 243 (89.90)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 0 | 21 | 5 | | | | 1 | 0 | 20 | 10 |
2 | | 1 | 23 | 3 | 0 | | | | 0 | 29 | 2 | 0 |
3 | | 1 | 4 | 22 | 0 | | | | 1 | 5 | 25 | 0 |
4 | | 21 | 5 | 1 | 0 | | | | 24 | 7 | 0 | 0 |
5 | | 24 | 0 | 3 | 0 | | | | 28 | 0 | 3 | 0 |
6 | | 4 | 21 | 1 | 1 | | | | 8 | 21 | 1 | 1 |
7 | | 20 | 3 | 0 | 4 | | | | 24 | 2 | 0 | 5 |
8 | | 4 | 21 | 0 | 2 | | | | 9 | 20 | 0 | 2 |
CGAAAGGGCGGC
GCCGCCCTTTCG
2 redundant motifs found:
AGCGAAAGGGCG - CGAAAGGGCG -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [AAAATCGGCGGC] 45 (86.41)
1 + .CGAAAAAGCGAG. 333 (93.01)
2 + [CTAAAGTGCTGC] 23 (89.60)
2 + [CGGAAAGGCGTT] 113 (86.99)
5 + [CGTGTGGGCGGA] 111 (88.95)
5 + .CGAAAGGGCGGC. 124 (100.00)
6 + .CGAGTGTGCGCC. 103 (90.98)
7 + [CGAGTGGGAGGA] 111 (88.85)
7 + .CGAAAGGGCGGC. 124 (100.00)
7 - .CGAGAGAGTGGA. 87 (90.55)
8 + .CGAAAAAGCGAG. 19 (93.01)
9 + [CGAAATTGCAGT] 176 (87.06)
9 - .CGGGAGAGCGGA. 25 (91.95)
10 + [CAAGATCGCGGC] 66 (88.62)
10 + .CTAAAATGCGCC. 173 (90.30)
11 + .CGAAAGGGCGGC. 121 (100.00)
12 + [CGAAAAAGTGTG] 50 (85.60)
12 - [GGAAAAACCGGC] 142 (88.84)
13 + .GAAAACGGCGGC. 46 (90.16)
13 + .CGAAAAAGCGAG. 333 (93.01)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 17 | 2 | 0 | | | | 0 | 10 | 1 | 0 |
2 | | 3 | 1 | 14 | 2 | | | | 1 | 0 | 9 | 1 |
3 | | 17 | 0 | 2 | 1 | | | | 10 | 0 | 1 | 0 |
4 | | 13 | 1 | 6 | 0 | | | | 8 | 0 | 3 | 0 |
5 | | 15 | 0 | 1 | 4 | | | | 10 | 0 | 0 | 1 |
6 | | 6 | 2 | 10 | 2 | | | | 4 | 1 | 6 | 0 |
7 | | 6 | 1 | 9 | 4 | | | | 5 | 0 | 4 | 2 |
8 | | 0 | 1 | 19 | 0 | | | | 0 | 0 | 11 | 0 |
9 | | 1 | 18 | 0 | 1 | | | | 0 | 10 | 0 | 1 |
10 | | 1 | 1 | 17 | 1 | | | | 0 | 0 | 11 | 0 |
11 | | 3 | 2 | 14 | 1 | | | | 3 | 2 | 6 | 0 |
12 | | 4 | 11 | 3 | 2 | | | | 2 | 6 | 3 | 0 |