Your Weeder Web Results
NEW: Starting a large job on file /tmp/motif_master/12003_WEEDER/mec3_t1_2_19.fa
Organism code: CE
Processing both strands
/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/12003_WEEDER/mec3_t1_2_19.fa CE large S
Searching for motifs of length 6 with 1 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12003_WEEDER/mec3_t1_2_19.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) ATTTTT 1.55
2) ATGCAT 0.68
3) ATTAAT 0.49
4) TAATTA 0.47
5) CGAATG 0.44
6) TTGCAA 0.42
7) CTATAG 0.40
8) TTATAA 0.39
9) AACGTT 0.38
10) TGTACA 0.36
Elapsed time : 0 min. 6 sec.
Searching for motifs of length 8 with 2 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12003_WEEDER/mec3_t1_2_19.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) AATGCATT 1.15
2) CATTAATG 0.85
3) AGAGCTCT 0.81
4) TCTTAAGA 0.79
5) TTATATAA 0.78
6) CTCTAGAG 0.76
7) GATATATC 0.76
8) ATACGTAT 0.76
9) GTGATCAC 0.76
10) TTCATGAA 0.74
Elapsed time : 2 min. 8 sec.
Searching for motifs of length 10 with 3 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12003_WEEDER/mec3_t1_2_19.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) TGATATATCA 0.73
2) CACCTAGGTG 0.73
3) ATCTATAGAT 0.70
4) AAATGCATTT 0.68
5) GTGTTAACAC 0.67
6) CAGAGCTCTG 0.67
7) AATACGTATT 0.64
8) TAGGATCCTA 0.63
9) GAATGCATTC 0.63
10) AAAGGCCTTT 0.63
Elapsed time : -31 min. -12 sec.
Searching for motifs of length 12 with 4 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12003_WEEDER/mec3_t1_2_19.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) GATAGAGAGGGA 1.74
2) GAAACAGAAGAA 1.73
3) GAGATAGAGAGG 1.68
4) AATGAGAAGAAG 1.67
5) AAGAAGGGGGAA 1.66
6) AAATGAGAAGAA 1.65
7) AGATAGAGAGGG 1.65
8) AAGAAAGAGGAA 1.65
9) AGGATAAGATGA 1.63
10) AGAAATGAAGAG 1.63
Elapsed time : 30 min. 53 sec.
Your sequences:
Sequence 1 : >ID1926163_Y48G8AL.8a_u2k_truncated
Sequence 2 : >ID1927380_F57B10.11_u2k_truncated
Sequence 3 : >ID1928725_R05D7.5_u2k_truncated
Sequence 4 : >ID1929273_F39B2.11_u2k_truncated
Sequence 5 : >ID1929342_F31C3.1_u2k_truncated
Sequence 6 : >ID1931660_C06A8.3_u2k_truncated
Sequence 7 : >ID1931761_T05C12.7_u2k_truncated
Sequence 8 : >ID1931792_K01C8.10_u2k_truncated
Sequence 9 : >ID1931831_F14E5.4_u2k_truncated
Sequence 10 : >ID1932139_AH6.10_u2k_truncated
Sequence 11 : >ID1933160_F01D5.8_u2k_truncated
Sequence 12 : >ID1933197_Y54G11A.1_u2k_truncated
Sequence 13 : >ID1933762_Y39A3CL.1_u2k_truncated
Sequence 14 : >ID1933993_C44B11.3_u2k_truncated
Sequence 15 : >ID1934657_B0336.11a_u2k_truncated
Sequence 16 : >ID1934894_C05D11.2_u2k_truncated
Sequence 17 : >ID1935092_F37C12.9_u2k_truncated
Sequence 18 : >ID1935100_F37C12.12_u2k_truncated
Sequence 19 : >ID1935354_D2007.2_u2k_truncated
Sequence 20 : >ID1935386_C02F5.3_u2k_truncated
Sequence 21 : >ID1935457_F42H10.3_u2k_truncated
Sequence 22 : >ID1935840_K03H1.4_u2k_truncated
Sequence 23 : >ID1936363_ZC482.5_u2k_truncated
Sequence 24 : >ID1937145_W08E12.5_u2k_truncated
Sequence 25 : >ID1937147_W08E12.3_u2k_truncated
Sequence 26 : >ID1937484_F29B9.4a_u2k_truncated
Sequence 27 : >ID1937513_E04A4.8_u2k_truncated
Sequence 28 : >ID1938117_D2024.6_u2k_truncated
Sequence 29 : >ID1938191_F49E8.3a_u2k_truncated
Sequence 30 : >ID1938193_F49E8.4_u2k_truncated
Sequence 31 : >ID1938322_F57H12.2_u2k_truncated
Sequence 32 : >ID1938323_F57H12.1_u2k_truncated
Sequence 33 : >ID1938324_F57H12.7_u2k_truncated
Sequence 34 : >ID1938498_F42A9.9_u2k_truncated
Sequence 35 : >ID1938580_C27B7.6_u2k_truncated
Sequence 36 : >ID1938896_T04B2.3a_u2k_truncated
Sequence 37 : >ID1939022_F01D4.6a_u2k_truncated
Sequence 38 : >ID1939258_F54E12.4_u2k_truncated
Sequence 39 : >ID1939832_Y45F10D.12_u2k_truncated
Sequence 40 : >ID1939992_Y57G11C.16_u2k_truncated
Sequence 41 : >ID1940557_C05E4.3_u2k_truncated
Sequence 42 : >ID1940777_Y46H3A.2_u2k_truncated
Sequence 43 : >ID1941055_F54E2.2_u2k_truncated
Sequence 44 : >ID1942035_F46E10.2_u2k_truncated
Sequence 45 : >ID1942149_T07H8.4a_u2k_truncated
Sequence 46 : >ID1942531_F20D6.5_u2k_truncated
Sequence 47 : >ID1942544_K07C11.4_u2k_truncated
Sequence 48 : >ID1943041_C50H2.3_u2k_truncated
Sequence 49 : >ID1943871_F15B9.1_u2k_truncated
Sequence 50 : >ID1944135_F58E10.4_u2k_truncated
Sequence 51 : >ID1944605_C55A1.6_u2k_truncated
Sequence 52 : >ID1944789_F10A3.11_u2k_truncated
Sequence 53 : >ID1945404_Y17D7B.4_u2k_truncated
Sequence 54 : >ID1945643_F19B2.5_u2k_truncated
Sequence 55 : >ID1946204_EGAP7.1_u2k_truncated
Sequence 56 : >ID1946256_T07D1.3_u2k_truncated
Sequence 57 : >ID1946353_F52E4.1a_u2k_truncated
Sequence 58 : >ID1946591_C52B9.9_u2k_truncated
Sequence 59 : >ID1946593_C52B9.6_u2k_truncated
Sequence 60 : >ID1946741_M03F4.7a_u2k_truncated
Sequence 61 : >ID1946996_W05H9.1_u2k_truncated
Sequence 62 : >ID1947327_ZK154.3_u2k_truncated
Sequence 63 : >ID1947422_C47D2.1_u2k_truncated
Sequence 64 : >ID1947950_F47B10.7_u2k_truncated
Sequence 65 : >ID1948027_C03A3.3_u2k_truncated
Sequence 66 : >ID1948088_C35C5.5_u2k_truncated
Sequence 67 : >ID1948177_VW06B3R.1a_u2k_truncated
Sequence 68 : >ID1948407_F46G10.6_u2k_truncated
Sequence 69 : >ID1948964_T01C8.7_u2k_truncated
**** MY ADVICE ****
*** Interesting motifs (highest-ranking) seem to be :
AATGCATT
AATGCATT
3 redundant motifs found:
GAATGCATTC - AAATGCATTT - ATGCAT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [AAAACATT] 35 (85.68)
1 + .AATACATT. 196 (94.18)
1 + .AATTAATT. 463 (90.15)
1 - .AATTAATT. 463 (90.15)
1 - .AATGTATT. 196 (94.18)
1 - [AATGTTTT] 35 (85.68)
2 + [AATCAATT] 404 (85.17)
2 - [AATTGATT] 404 (85.17)
3 + [AATGATTT] 129 (86.58)
3 - [AAATCATT] 129 (86.58)
6 + [ATTTCATT] 363 (85.67)
6 + [AATGAAAT] 611 (85.67)
6 + [ATTTCATT] 1137 (85.67)
6 + [AAATCATT] 1305 (86.58)
6 + [AATTTATT] 1714 (89.25)
6 - [AATAAATT] 1714 (89.25)
6 - [AATGATTT] 1305 (86.58)
6 - [AATGAAAT] 1137 (85.67)
6 - [ATTTCATT] 611 (85.67)
6 - [AATGAAAT] 363 (85.67)
7 + [AATTCAAT] 17 (85.67)
7 - [ATTGAATT] 17 (85.67)
8 + [AATTGATT] 33 (85.17)
8 + [AATATATT] 77 (88.36)
8 - [AATATATT] 77 (88.36)
8 - [AATCAATT] 33 (85.17)
9 + [CATGCATT] 328 (88.25)
9 + [AAATCATT] 434 (86.58)
9 + [ATTTCATT] 474 (85.67)
9 - [AATGAAAT] 474 (85.67)
9 - [AATGATTT] 434 (86.58)
9 - [AATGCATG] 328 (88.25)
10 + .ATTGCATT. 350 (90.59)
10 + .AATGCAAT. 537 (90.59)
10 + [AATGAAAT] 560 (85.67)
10 + [ATTTCATT] 656 (85.67)
10 + [AATAAATT] 1339 (89.25)
10 + [AATTCAAT] 1413 (85.67)
10 + [AATATATT] 1485 (88.36)
10 + [AAAGTATT] 1843 (85.68)
10 + [AATCAATT] 1921 (85.17)
10 + [AATGTTTT] 1934 (85.68)
10 - [AAAACATT] 1934 (85.68)
10 - [AATTGATT] 1921 (85.17)
10 - [AATACTTT] 1843 (85.68)
10 - [AATATATT] 1485 (88.36)
10 - [ATTGAATT] 1413 (85.67)
10 - [AATTTATT] 1339 (89.25)
10 - [AATGAAAT] 656 (85.67)
10 - [ATTTCATT] 560 (85.67)
10 - .ATTGCATT. 537 (90.59)
10 - .AATGCAAT. 350 (90.59)
11 + .AATGCATT. 779 (100.00)
11 + .AATTCATT. 918 (95.08)
11 + [AAAGAATT] 1286 (86.58)
11 - [AATTCTTT] 1286 (86.58)
11 - .AATGAATT. 918 (95.08)
11 - .AATGCATT. 779 (100.00)
12 + [AAAACATT] 178 (85.68)
12 + [AATAAATT] 645 (89.25)
12 + [AATGTTTT] 1087 (85.68)
12 - [AAAACATT] 1087 (85.68)
12 - [AATTTATT] 645 (89.25)
12 - [AATGTTTT] 178 (85.68)
13 + .AATGCATT. 94 (100.00)
13 + [AATTTATT] 133 (89.25)
13 - [AATAAATT] 133 (89.25)
13 - .AATGCATT. 94 (100.00)
14 + .AATACATT. 493 (94.18)
14 + .AATGCATT. 575 (100.00)
14 + .AATTAATT. 816 (90.15)
14 - .AATTAATT. 816 (90.15)
14 - .AATGCATT. 575 (100.00)
14 - .AATGTATT. 493 (94.18)
15 + [AATACTTT] 146 (85.68)
15 - [AAAGTATT] 146 (85.68)
16 + .AATGTATT. 248 (94.18)
16 - .AATACATT. 248 (94.18)
17 + [AAAACATT] 437 (85.68)
17 + [AATAAATT] 516 (89.25)
17 + [AATTCAAT] 631 (85.67)
17 - [ATTGAATT] 631 (85.67)
17 - [AATTTATT] 516 (89.25)
17 - [AATGTTTT] 437 (85.68)
18 + .AATGTATT. 7 (94.18)
18 + [CATGCATT] 664 (88.25)
18 + [AAATCATT] 1135 (86.58)
18 - [AATGATTT] 1135 (86.58)
18 - [AATGCATG] 664 (88.25)
18 - .AATACATT. 7 (94.18)
19 + .AATGCAAT. 345 (90.59)
19 + .AATGAATT. 918 (95.08)
19 + [AAATCATT] 938 (86.58)
19 + [AATTCAAT] 1015 (85.67)
19 + [ATTTCATT] 1957 (85.67)
19 - [AATGAAAT] 1957 (85.67)
19 - [ATTGAATT] 1015 (85.67)
19 - [AATGATTT] 938 (86.58)
19 - .AATTCATT. 918 (95.08)
19 - .ATTGCATT. 345 (90.59)
20 + .AATGAATT. 153 (95.08)
20 + [AATTTATT] 157 (89.25)
20 + .AATTAATT. 236 (90.15)
20 - .AATTAATT. 236 (90.15)
20 - [AATAAATT] 157 (89.25)
20 - .AATTCATT. 153 (95.08)
21 + .AATTAATT. 45 (90.15)
21 + [AATATATT] 285 (88.36)
21 + .AATACATT. 483 (94.18)
21 + [AAAGTATT] 854 (85.68)
21 + .AATACATT. 1059 (94.18)
21 + [AATTTATT] 1438 (89.25)
21 + [AAAGTATT] 1551 (85.68)
21 + [AAAACATT] 1829 (85.68)
21 - [AATGTTTT] 1829 (85.68)
21 - [AATACTTT] 1551 (85.68)
21 - [AATAAATT] 1438 (89.25)
21 - .AATGTATT. 1059 (94.18)
21 - [AATACTTT] 854 (85.68)
21 - .AATGTATT. 483 (94.18)
21 - [AATATATT] 285 (88.36)
21 - .AATTAATT. 45 (90.15)
22 + [AATAAATT] 37 (89.25)
22 + .AATGCATT. 449 (100.00)
22 + [AAAGTATT] 527 (85.68)
22 + .AAAGCATT. 878 (91.50)
22 - .AATGCTTT. 878 (91.50)
22 - [AATACTTT] 527 (85.68)
22 - .AATGCATT. 449 (100.00)
22 - [AATTTATT] 37 (89.25)
24 + .AATTAATT. 78 (90.15)
24 - .AATTAATT. 78 (90.15)
25 + .AATGCATT. 147 (100.00)
25 + .AATGCATT. 171 (100.00)
25 + [AATTCAAT] 358 (85.67)
25 + [AATACTTT] 907 (85.68)
25 - [AAAGTATT] 907 (85.68)
25 - [ATTGAATT] 358 (85.67)
25 - .AATGCATT. 171 (100.00)
25 - .AATGCATT. 147 (100.00)
26 + .AATTAATT. 78 (90.15)
26 + [AATGAAAT] 270 (85.67)
26 + .AATGTATT. 275 (94.18)
26 + [AATGTTTT] 300 (85.68)
26 - [AAAACATT] 300 (85.68)
26 - .AATACATT. 275 (94.18)
26 - [ATTTCATT] 270 (85.67)
26 - .AATTAATT. 78 (90.15)
27 + [AATAAATT] 20 (89.25)
27 + [AAAACATT] 53 (85.68)
27 + .AATTCATT. 222 (95.08)
27 - .AATGAATT. 222 (95.08)
27 - [AATGTTTT] 53 (85.68)
27 - [AATTTATT] 20 (89.25)
28 + .AATTAATT. 63 (90.15)
28 + [AAAACATT] 402 (85.68)
28 + .AATGCATT. 565 (100.00)
28 + [ATTGAATT] 892 (85.67)
28 + .AATGCTTT. 914 (91.50)
28 + [AAAACATT] 994 (85.68)
28 + [AATATATT] 1191 (88.36)
28 - [AATATATT] 1191 (88.36)
28 - [AATGTTTT] 994 (85.68)
28 - .AAAGCATT. 914 (91.50)
28 - [AATTCAAT] 892 (85.67)
28 - .AATGCATT. 565 (100.00)
28 - [AATGTTTT] 402 (85.68)
28 - .AATTAATT. 63 (90.15)
29 + .AATTCATT. 107 (95.08)
29 - .AATGAATT. 107 (95.08)
30 + [AATTCTTT] 184 (86.58)
30 - [AAAGAATT] 184 (86.58)
31 + [AAAACATT] 215 (85.68)
31 + [AATACTTT] 362 (85.68)
31 + .AATGCATT. 673 (100.00)
31 - .AATGCATT. 673 (100.00)
31 - [AAAGTATT] 362 (85.68)
31 - [AATGTTTT] 215 (85.68)
32 + [AATGTTTT] 42 (85.68)
32 + [AATGTTTT] 110 (85.68)
32 + .AATGCATT. 226 (100.00)
32 + [AATAAATT] 382 (89.25)
32 - [AATTTATT] 382 (89.25)
32 - .AATGCATT. 226 (100.00)
32 - [AAAACATT] 110 (85.68)
32 - [AAAACATT] 42 (85.68)
33 + [ATTGAATT] 236 (85.67)
33 + .AATACATT. 293 (94.18)
33 + .AAAGCATT. 319 (91.50)
33 + [AATTTATT] 606 (89.25)
33 + [AATGAAAT] 948 (85.67)
33 + [AATGCATG] 1226 (88.25)
33 - [CATGCATT] 1226 (88.25)
33 - [ATTTCATT] 948 (85.67)
33 - [AATAAATT] 606 (89.25)
33 - .AATGCTTT. 319 (91.50)
33 - .AATGTATT. 293 (94.18)
33 - [AATTCAAT] 236 (85.67)
34 + .AATGAATT. 855 (95.08)
34 + [AATGTTTT] 1405 (85.68)
34 + [AATGTTTT] 1745 (85.68)
34 - [AAAACATT] 1745 (85.68)
34 - [AAAACATT] 1405 (85.68)
34 - .AATTCATT. 855 (95.08)
35 + [AATGTTTT] 338 (85.68)
35 + .AATGTATT. 459 (94.18)
35 + [AATTCAAT] 815 (85.67)
35 + [AATGAAAT] 926 (85.67)
35 - [ATTTCATT] 926 (85.67)
35 - [ATTGAATT] 815 (85.67)
35 - .AATACATT. 459 (94.18)
35 - [AAAACATT] 338 (85.68)
36 + [AATTTATT] 95 (89.25)
36 + [AATGAAAT] 132 (85.67)
36 + [AATTGATT] 344 (85.17)
36 + [ATTTCATT] 630 (85.67)
36 + [ATTGAATT] 1036 (85.67)
36 + [AATGTTTT] 1259 (85.68)
36 + [AATAAATT] 1599 (89.25)
36 - [AATTTATT] 1599 (89.25)
36 - [AAAACATT] 1259 (85.68)
36 - [AATTCAAT] 1036 (85.67)
36 - [AATGAAAT] 630 (85.67)
36 - [AATCAATT] 344 (85.17)
36 - [ATTTCATT] 132 (85.67)
36 - [AATAAATT] 95 (89.25)
37 + [ATTGAATT] 283 (85.67)
37 + [ATTTCATT] 716 (85.67)
37 + [AATGTTTT] 746 (85.68)
37 + [AATGATTT] 1056 (86.58)
37 + [ACTGCATT] 1078 (85.61)
37 + .AATTCATT. 1518 (95.08)
37 + .AATGCATT. 1529 (100.00)
37 + [AATGCATC] 1656 (87.55)
37 + [ATTTCATT] 1812 (85.67)
37 - [AATGAAAT] 1812 (85.67)
37 - [GATGCATT] 1656 (87.55)
37 - .AATGCATT. 1529 (100.00)
37 - .AATGAATT. 1518 (95.08)
37 - [AATGCAGT] 1078 (85.61)
37 - [AAATCATT] 1056 (86.58)
37 - [AAAACATT] 746 (85.68)
37 - [AATGAAAT] 716 (85.67)
37 - [AATTCAAT] 283 (85.67)
39 + [ATTTCATT] 278 (85.67)
39 + .AATGTATT. 312 (94.18)
39 + [AATGAAAT] 396 (85.67)
39 + [ATTTCATT] 402 (85.67)
39 + .AATGAATT. 593 (95.08)
39 - .AATTCATT. 593 (95.08)
39 - [AATGAAAT] 402 (85.67)
39 - [ATTTCATT] 396 (85.67)
39 - .AATACATT. 312 (94.18)
39 - [AATGAAAT] 278 (85.67)
40 + [AATTTATT] 449 (89.25)
40 + [AATGTTTT] 734 (85.68)
40 - [AAAACATT] 734 (85.68)
40 - [AATAAATT] 449 (89.25)
42 + [AATGCATC] 230 (87.55)
42 - [GATGCATT] 230 (87.55)
43 + [AAGGCATT] 111 (86.32)
43 - [AATGCCTT] 111 (86.32)
45 + [AATAAATT] 62 (89.25)
45 + [AGTGCATT] 254 (87.02)
45 + [AATGTTTT] 313 (85.68)
45 + [AATTTATT] 775 (89.25)
45 + [TATGCATT] 1431 (89.54)
45 + [AATTTATT] 1542 (89.25)
45 + [ATTTCATT] 1698 (85.67)
45 - [AATGAAAT] 1698 (85.67)
45 - [AATAAATT] 1542 (89.25)
45 - [AATGCATA] 1431 (89.54)
45 - [AATAAATT] 775 (89.25)
45 - [AAAACATT] 313 (85.68)
45 - [AATGCACT] 254 (87.02)
45 - [AATTTATT] 62 (89.25)
46 + [AAAGAATT] 388 (86.58)
46 + [AATTTATT] 413 (89.25)
46 - [AATAAATT] 413 (89.25)
46 - [AATTCTTT] 388 (86.58)
47 + .AAAGCATT. 161 (91.50)
47 - .AATGCTTT. 161 (91.50)
48 + [ATTGAATT] 37 (85.67)
48 + .AATGTATT. 103 (94.18)
48 + [AAAACATT] 199 (85.68)
48 + [AATTCTTT] 237 (86.58)
48 + .AATACATT. 343 (94.18)
48 + .AATTCATT. 629 (95.08)
48 - .AATGAATT. 629 (95.08)
48 - .AATGTATT. 343 (94.18)
48 - [AAAGAATT] 237 (86.58)
48 - [AATGTTTT] 199 (85.68)
48 - .AATACATT. 103 (94.18)
48 - [AATTCAAT] 37 (85.67)
49 + [AAAACATT] 72 (85.68)
49 + [AATGTTTT] 485 (85.68)
49 - [AAAACATT] 485 (85.68)
49 - [AATGTTTT] 72 (85.68)
50 + [AATTGATT] 146 (85.17)
50 + [ATTGAATT] 572 (85.67)
50 - [AATTCAAT] 572 (85.67)
50 - [AATCAATT] 146 (85.17)
52 + [AAAGTATT] 145 (85.68)
52 - [AATACTTT] 145 (85.68)
53 + [AAAACATT] 346 (85.68)
53 - [AATGTTTT] 346 (85.68)
54 + [AATGTTTT] 51 (85.68)
54 + .AATCCATT. 61 (90.09)
54 + [AATTTATT] 176 (89.25)
54 - [AATAAATT] 176 (89.25)
54 - .AATGGATT. 61 (90.09)
54 - [AAAACATT] 51 (85.68)
55 + [AAAACATT] 320 (85.68)
55 + [AATTTATT] 1262 (89.25)
55 + [ATTTCATT] 1441 (85.67)
55 - [AATGAAAT] 1441 (85.67)
55 - [AATAAATT] 1262 (89.25)
55 - [AATGTTTT] 320 (85.68)
56 + .AATGCTTT. 59 (91.50)
56 + [AATGATTT] 113 (86.58)
56 + .AATGCATT. 228 (100.00)
56 + .AATGAATT. 264 (95.08)
56 + [AATTGATT] 977 (85.17)
56 + .AATGTATT. 1129 (94.18)
56 + .AATTCATT. 1228 (95.08)
56 + [ATTTCATT] 1351 (85.67)
56 - [AATGAAAT] 1351 (85.67)
56 - .AATGAATT. 1228 (95.08)
56 - .AATACATT. 1129 (94.18)
56 - [AATCAATT] 977 (85.17)
56 - .AATTCATT. 264 (95.08)
56 - .AATGCATT. 228 (100.00)
56 - [AAATCATT] 113 (86.58)
56 - .AAAGCATT. 59 (91.50)
57 + [AATTCAAT] 86 (85.67)
57 + [AATGTTTT] 91 (85.68)
57 + [AATGTTTT] 355 (85.68)
57 + [GATGCATT] 386 (87.55)
57 + [AAAACATT] 854 (85.68)
57 + [AATTCTTT] 1306 (86.58)
57 - [AAAGAATT] 1306 (86.58)
57 - [AATGTTTT] 854 (85.68)
57 - [AATGCATC] 386 (87.55)
57 - [AAAACATT] 355 (85.68)
57 - [AAAACATT] 91 (85.68)
57 - [ATTGAATT] 86 (85.67)
58 + [TATGCATT] 109 (89.54)
58 - [AATGCATA] 109 (89.54)
59 + [AATATATT] 270 (88.36)
59 + [ATTGAATT] 1844 (85.67)
59 - [AATTCAAT] 1844 (85.67)
59 - [AATATATT] 270 (88.36)
60 + [AATGATTT] 583 (86.58)
60 + [AATGTTTT] 1264 (85.68)
60 + [AATGATTT] 1963 (86.58)
60 - [AAATCATT] 1963 (86.58)
60 - [AAAACATT] 1264 (85.68)
60 - [AAATCATT] 583 (86.58)
61 + [AATGATTT] 353 (86.58)
61 + [AATAAATT] 387 (89.25)
61 + [AATTTATT] 391 (89.25)
61 + [AATTTATT] 610 (89.25)
61 + [AATGTTTT] 751 (85.68)
61 + [ATTTCATT] 794 (85.67)
61 + [AATTGATT] 1042 (85.17)
61 - [AATCAATT] 1042 (85.17)
61 - [AATGAAAT] 794 (85.67)
61 - [AAAACATT] 751 (85.68)
61 - [AATAAATT] 610 (89.25)
61 - [AATAAATT] 391 (89.25)
61 - [AATTTATT] 387 (89.25)
61 - [AAATCATT] 353 (86.58)
62 + .AATGCATT. 295 (100.00)
62 + [CATGCATT] 460 (88.25)
62 - [AATGCATG] 460 (88.25)
62 - .AATGCATT. 295 (100.00)
63 + [AATAAATT] 592 (89.25)
63 + [AAAACATT] 1175 (85.68)
63 - [AATGTTTT] 1175 (85.68)
63 - [AATTTATT] 592 (89.25)
64 + [AAGGCATT] 17 (86.32)
64 + [AAAGTATT] 147 (85.68)
64 + [AAAACATT] 1075 (85.68)
64 + [AATTCTTT] 1084 (86.58)
64 + [AATATATT] 1173 (88.36)
64 + .AATACATT. 1283 (94.18)
64 + [AAAGAATT] 1336 (86.58)
64 + [AATTTATT] 1491 (89.25)
64 + .AATTAATT. 1589 (90.15)
64 + [AATCAATT] 1908 (85.17)
64 - [AATTGATT] 1908 (85.17)
64 - .AATTAATT. 1589 (90.15)
64 - [AATAAATT] 1491 (89.25)
64 - [AATTCTTT] 1336 (86.58)
64 - .AATGTATT. 1283 (94.18)
64 - [AATATATT] 1173 (88.36)
64 - [AAAGAATT] 1084 (86.58)
64 - [AATGTTTT] 1075 (85.68)
64 - [AATACTTT] 147 (85.68)
64 - [AATGCCTT] 17 (86.32)
65 + [AATGCATA] 50 (89.54)
65 + [AATTCAAT] 476 (85.67)
65 + .AATTAATT. 626 (90.15)
65 + [AATTGATT] 926 (85.17)
65 + .AATTCATT. 1262 (95.08)
65 + [AATGAAAT] 1455 (85.67)
65 + .AATCCATT. 1653 (90.09)
65 + [AAAACATT] 1794 (85.68)
65 + [AAAACATT] 1811 (85.68)
65 + .AATGCATT. 1936 (100.00)
65 + [AATTCTTT] 1959 (86.58)
65 - [AAAGAATT] 1959 (86.58)
65 - .AATGCATT. 1936 (100.00)
65 - [AATGTTTT] 1811 (85.68)
65 - [AATGTTTT] 1794 (85.68)
65 - .AATGGATT. 1653 (90.09)
65 - [ATTTCATT] 1455 (85.67)
65 - .AATGAATT. 1262 (95.08)
65 - [AATCAATT] 926 (85.17)
65 - .AATTAATT. 626 (90.15)
65 - [ATTGAATT] 476 (85.67)
65 - [TATGCATT] 50 (89.54)
66 + [AATTTATT] 21 (89.25)
66 + .AATACATT. 255 (94.18)
66 + [AATAAATT] 404 (89.25)
66 + [AAAGAATT] 1134 (86.58)
66 - [AATTCTTT] 1134 (86.58)
66 - [AATTTATT] 404 (89.25)
66 - .AATGTATT. 255 (94.18)
66 - [AATAAATT] 21 (89.25)
67 + .AATGAATT. 106 (95.08)
67 + [AGTGCATT] 152 (87.02)
67 + .AATTAATT. 479 (90.15)
67 + [AAAACATT] 548 (85.68)
67 - [AATGTTTT] 548 (85.68)
67 - .AATTAATT. 479 (90.15)
67 - [AATGCACT] 152 (87.02)
67 - .AATTCATT. 106 (95.08)
68 + [AATCAATT] 473 (85.17)
68 + [AATGAAAT] 576 (85.67)
68 + .AATACATT. 581 (94.18)
68 + [AAAGAATT] 705 (86.58)
68 + [AATTTATT] 861 (89.25)
68 + .AATACATT. 919 (94.18)
68 + [AAAACATT] 1491 (85.68)
68 + [ATTTCATT] 1957 (85.67)
68 - [AATGAAAT] 1957 (85.67)
68 - [AATGTTTT] 1491 (85.68)
68 - .AATGTATT. 919 (94.18)
68 - [AATAAATT] 861 (89.25)
68 - [AATTCTTT] 705 (86.58)
68 - .AATGTATT. 581 (94.18)
68 - [ATTTCATT] 576 (85.67)
68 - [AATTGATT] 473 (85.17)
69 + [AATTCTTT] 76 (86.58)
69 + [TATGCATT] 138 (89.54)
69 + .AATACATT. 301 (94.18)
69 - .AATGTATT. 301 (94.18)
69 - [AATGCATA] 138 (89.54)
69 - [AAAGAATT] 76 (86.58)
Frequency Matrix | All Occs | | | Best Occs |
|---|
| | | A | C | G | T | | | A | C | G | T |
|---|
| 1 | | 1017 | 66 | 56 | 89 | | | | 128 | 0 | 0 | 0 |
| 2 | | 1027 | 36 | 50 | 115 | | | | 125 | 0 | 0 | 3 |
| 3 | | 137 | 60 | 41 | 990 | | | | 5 | 0 | 0 | 123 |
| 4 | | 189 | 73 | 733 | 233 | | | | 18 | 2 | 75 | 33 |
| 5 | | 233 | 733 | 73 | 189 | | | | 33 | 75 | 2 | 18 |
| 6 | | 990 | 41 | 60 | 137 | | | | 123 | 0 | 0 | 5 |
| 7 | | 115 | 50 | 36 | 1027 | | | | 3 | 0 | 0 | 125 |
| 8 | | 89 | 56 | 66 | 1017 | | | | 0 | 0 | 0 | 128 |
GATAGAGAGGGA
TCCCTCTCTATC
4 redundant motifs found:
AGATAGAGAGGG - AAGAAAGAGGAA - GAGATAGAGAGG - GAAACAGAAGAA -
Best occurrences (match percentage):
Seq St oligo pos match
1 - [GAAAAAGAGAAA] 225 (86.54)
3 + [CAAAGAGAGGGA] 84 (89.99)
5 - .GATAGAGAGGGC. 251 (90.46)
5 - [GAAAGAAGGGGA] 206 (85.00)
6 + [CAGAGAGAGAGA] 1875 (86.73)
6 + [GAGAGAGAGATA] 1877 (87.43)
6 + [GAGAGAGATAGA] 1879 (89.48)
6 + [GAGAGATAGAGA] 1881 (87.81)
6 + .GATAGAGATAGA. 1885 (92.92)
6 + .GATAGAGAGGGA. 1891 (100.00)
6 + [GAGGGAGAGAGA] 1897 (87.11)
9 + [GAAAAAAAGAGA] 351 (86.55)
10 + [GATTGAGATAGA] 146 (85.53)
12 + [GAGGGAGAAGGA] 502 (85.70)
12 - [AAGAGAGAGAGA] 248 (88.96)
12 - .GAGAGAGAGGAA. 244 (92.43)
19 - .GAGAGAGAGAGA. 606 (93.81)
19 - [GAGAGAGAGAAA] 604 (89.68)
22 + .GACAGAGAGAGA. 1031 (90.40)
22 + [GAGAGAGAAAGA] 1035 (89.66)
22 + [GAGAGAAAGAGA] 1037 (89.69)
25 - [GAAAAAGAAGAA] 107 (85.13)
29 - .GAAAGAAAGAGA. 78 (90.20)
29 - .GAAAGAGAAGGA. 74 (92.91)
31 - [GAAAGAGACGAA] 775 (85.65)
36 - [GATAAAAAGAGA] 1733 (89.48)
37 + [GATAGAGAGAGC] 1583 (87.71)
48 + [GATGGAGATGGA] 1249 (88.97)
52 - [AATAAAAAGGGA] 395 (87.37)
53 + [AATGGAGAGGGA] 164 (88.45)
57 - [GAGAAAAAGGGA] 1284 (88.79)
57 - [GAGAGATAGAGA] 1102 (87.81)
57 - .GATAGAGATGGA. 1098 (95.67)
59 - [GGGAGAGAGAGA] 1778 (85.64)
59 - .GAGAGAGAGGAA. 1774 (92.43)
59 - [GAAAAAGAAGAA] 729 (85.13)
60 - [GTAAGAGAGAGA] 1376 (85.94)
60 - [AAGAGAGAGAGA] 1374 (88.96)
60 - .GAGAGAGAGAGA. 1372 (93.81)
60 - .GAGAGAGAGAGA. 1370 (93.81)
60 - .GAGAGAGAGAGA. 1368 (93.81)
60 - [GGTAAAGAGAGA] 1210 (85.43)
60 - [GAAAGAAAAAGA] 1140 (86.04)
63 - .AATAAAGAGGGA. 1918 (91.50)
64 - [GATAAACAAGGA] 954 (85.49)
66 - [GATAGATACGGA] 852 (86.70)
68 - [GACAGAAAGGGA] 1764 (89.02)
Frequency Matrix | All Occs | | | Best Occs |
|---|
| | | A | C | G | T | | | A | C | G | T |
|---|
| 1 | | 73 | 38 | 302 | 45 | | | | 1 | 0 | 13 | 0 |
| 2 | | 372 | 20 | 34 | 32 | | | | 14 | 0 | 0 | 0 |
| 3 | | 101 | 32 | 87 | 238 | | | | 2 | 1 | 6 | 5 |
| 4 | | 348 | 21 | 49 | 40 | | | | 14 | 0 | 0 | 0 |
| 5 | | 98 | 34 | 285 | 41 | | | | 1 | 0 | 13 | 0 |
| 6 | | 375 | 23 | 26 | 34 | | | | 14 | 0 | 0 | 0 |
| 7 | | 85 | 40 | 284 | 49 | | | | 1 | 0 | 13 | 0 |
| 8 | | 368 | 19 | 36 | 35 | | | | 14 | 0 | 0 | 0 |
| 9 | | 80 | 32 | 270 | 76 | | | | 1 | 0 | 11 | 2 |
| 10 | | 120 | 24 | 268 | 46 | | | | 7 | 0 | 7 | 0 |
| 11 | | 89 | 25 | 298 | 46 | | | | 2 | 0 | 12 | 0 |
| 12 | | 375 | 23 | 28 | 32 | | | | 13 | 1 | 0 | 0 |
*** Interesting motifs (not highest-ranking) can also be :
TGATATATCA
TGATATATCA
1 redundant motifs found:
GATATATC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .TGATATTTAA. 311 (90.01)
1 + [TGAAATTTTA] 343 (86.02)
1 - [TAAAATTTCA] 343 (86.02)
1 - .TTAAATATCA. 311 (90.01)
4 + [TGTAATATCA] 693 (88.28)
4 - [TGATATTACA] 703 (88.28)
8 + [TAAAATATTA] 396 (85.18)
8 - [TAATATTTTA] 396 (85.18)
9 + [TAATATTTTA] 266 (85.18)
9 - [TAAAATATTA] 266 (85.18)
10 + .TGAAATTTCA. 454 (91.25)
10 + .TGAAATATCA. 797 (95.62)
10 + .TGATATTTTA. 971 (90.40)
10 + [TCAAATATCA] 1629 (87.80)
10 - [TGATATTTGA] 1629 (87.80)
10 - .TAAAATATCA. 971 (90.40)
10 - .TGATATTTCA. 797 (95.62)
10 - .TGAAATTTCA. 454 (91.25)
15 + [TGTAATATCA] 482 (88.28)
15 + .TGATATATGA. 549 (92.18)
15 + .TGATATATCA. 556 (100.00)
15 - .TGATATATCA. 556 (100.00)
15 - .TCATATATCA. 549 (92.18)
15 - [TGATATTACA] 482 (88.28)
17 + [TGATTTTTCA] 233 (89.32)
17 + [TTATATATAA] 545 (88.78)
17 - [TTATATATAA] 545 (88.78)
17 - [TGAAAAATCA] 233 (89.32)
18 + [TAATATTTTA] 472 (85.18)
18 - [TAAAATATTA] 472 (85.18)
19 + [TAATTTATCA] 980 (88.47)
19 - [TGATAAATTA] 980 (88.47)
20 + .TGATATTTTA. 254 (90.40)
20 - .TAAAATATCA. 254 (90.40)
21 + .TGAAATTTCA. 530 (91.25)
21 + [TCATATATTA] 1048 (86.95)
21 - [TAATATATGA] 1048 (86.95)
21 - .TGAAATTTCA. 530 (91.25)
22 + [TGATAAATCT] 330 (85.68)
22 - [AGATTTATCA] 330 (85.68)
23 + [TGAAATTTAA] 126 (85.64)
23 + .TGAAATTTCA. 1039 (91.25)
23 - .TGAAATTTCA. 1039 (91.25)
23 - [TTAAATTTCA] 126 (85.64)
24 + .TGATATTTAA. 92 (90.01)
24 - .TTAAATATCA. 92 (90.01)
27 + [TATTATATCA] 414 (87.44)
27 - [TGATATAATA] 414 (87.44)
28 + .TTATATTTCA. 698 (90.01)
28 - .TGAAATATAA. 698 (90.01)
33 + [TAAAATTTCA] 847 (86.02)
33 + [TGATATAAAA] 1135 (87.05)
33 - [TTTTATATCA] 1135 (87.05)
33 - [TGAAATTTTA] 847 (86.02)
34 + .TGATATATTA. 1023 (94.78)
34 - .TAATATATCA. 1023 (94.78)
35 + [TTAAATTTCA] 491 (85.64)
35 + [TGATAAATGA] 633 (85.87)
35 - [TCATTTATCA] 633 (85.87)
35 - [TGAAATTTAA] 491 (85.64)
36 + .TGATATATCT. 698 (91.98)
36 + [ATATATATCA] 1167 (86.37)
36 - [TGATATATAT] 1167 (86.37)
36 - .AGATATATCA. 698 (91.98)
37 + [TGAAATTTTA] 221 (86.02)
37 + .TGATTTATCA. 406 (93.69)
37 + [TGAGATTTCA] 712 (86.85)
37 - [TGAAATCTCA] 712 (86.85)
37 - .TGATAAATCA. 406 (93.69)
37 - [TAAAATTTCA] 221 (86.02)
39 + .TGAAATTTCA. 398 (91.25)
39 + [TGATAAATTA] 685 (88.47)
39 - [TAATTTATCA] 685 (88.47)
39 - .TGAAATTTCA. 398 (91.25)
43 + [TGAAGTATCA] 318 (85.87)
43 - [TGATACTTCA] 318 (85.87)
45 + .TGAGATATCA. 679 (91.22)
45 - .TGATATCTCA. 679 (91.22)
47 + [TGATAAAACA] 102 (86.36)
47 - [TGTTTTATCA] 102 (86.36)
48 + [TGAAACATCA] 1002 (85.87)
48 - [TGATGTTTCA] 1002 (85.87)
50 + [TAATATATAA] 621 (89.17)
50 - [TTATATATTA] 621 (89.17)
51 + [TGAAATTTAA] 181 (85.64)
51 - [TTAAATTTCA] 181 (85.64)
54 + .TAATATTTCA. 699 (90.40)
54 - .TGAAATATTA. 699 (90.40)
55 + .AGATATATCA. 1363 (91.98)
55 - .TGATATATCT. 1363 (91.98)
56 + .TGAAATTTCA. 575 (91.25)
56 + .TGATATATCA. 1492 (100.00)
56 - .TGATATATCA. 1492 (100.00)
56 - .TGAAATTTCA. 575 (91.25)
59 + [TAAAATTTCA] 1554 (86.02)
59 - [TGAAATTTTA] 1554 (86.02)
61 + [TTTTATATCA] 891 (87.05)
61 - [TGATATAAAA] 891 (87.05)
65 + .TGATGTATCA. 770 (90.24)
65 + .TAATATTTCA. 1133 (90.40)
65 - .TGAAATATTA. 1133 (90.40)
65 - .TGATACATCA. 770 (90.24)
66 + [TGATATATAT] 135 (86.37)
66 + [TTATTTATCA] 926 (88.09)
66 - [TGATAAATAA] 926 (88.09)
66 - [ATATATATCA] 135 (86.37)
67 + [TAATATTTTA] 234 (85.18)
67 - [TAAAATATTA] 234 (85.18)
68 + .TGATATTTCA. 1953 (95.62)
68 - .TGAAATATCA. 1953 (95.62)
Frequency Matrix | All Occs | | | Best Occs |
|---|
| | | A | C | G | T | | | A | C | G | T |
|---|
| 1 | | 111 | 48 | 57 | 848 | | | | 2 | 0 | 0 | 44 |
| 2 | | 172 | 89 | 647 | 156 | | | | 5 | 1 | 37 | 3 |
| 3 | | 836 | 49 | 49 | 130 | | | | 46 | 0 | 0 | 0 |
| 4 | | 232 | 52 | 76 | 704 | | | | 19 | 0 | 1 | 26 |
| 5 | | 772 | 71 | 65 | 156 | | | | 44 | 0 | 1 | 1 |
| 6 | | 156 | 65 | 71 | 772 | | | | 1 | 1 | 0 | 44 |
| 7 | | 704 | 76 | 52 | 232 | | | | 26 | 1 | 0 | 19 |
| 8 | | 130 | 49 | 49 | 836 | | | | 0 | 0 | 0 | 46 |
| 9 | | 156 | 647 | 89 | 172 | | | | 3 | 37 | 1 | 5 |
| 10 | | 848 | 57 | 48 | 111 | | | | 44 | 0 | 0 | 2 |
ATTAAT
ATTAAT
2 redundant motifs found:
CATTAATG - TAATTA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [ATCAAT] 109 (85.32)
1 + [ATTATT] 209 (89.19)
1 + [AATAAT] 286 (89.19)
1 + [TTTAAT] 299 (89.18)
1 + [TTTAAT] 316 (89.18)
1 + [ATTAAA] 425 (89.18)
1 + .ATTAAT. 464 (100.00)
1 + [ATTATT] 548 (89.19)
1 - [AATAAT] 548 (89.19)
1 - .ATTAAT. 464 (100.00)
1 - [TTTAAT] 425 (89.18)
1 - [ATTAAA] 316 (89.18)
1 - [ATTAAA] 299 (89.18)
1 - [ATTATT] 286 (89.19)
1 - [AATAAT] 209 (89.19)
1 - [ATTGAT] 109 (85.32)
2 + [AATAAT] 11 (89.19)
2 + [ATTATT] 26 (89.19)
2 + [TTTAAT] 155 (89.18)
2 + [ATTCAT] 190 (86.83)
2 + [AATAAT] 336 (89.19)
2 + [ATTTAT] 358 (89.64)
2 + [ATCAAT] 405 (85.32)
2 - [ATTGAT] 405 (85.32)
2 - [ATAAAT] 358 (89.64)
2 - [ATTATT] 336 (89.19)
2 - [ATGAAT] 190 (86.83)
2 - [ATTAAA] 155 (89.18)
2 - [AATAAT] 26 (89.19)
2 - [ATTATT] 11 (89.19)
3 + [ATAAAT] 51 (89.64)
3 + [ATAAAT] 126 (89.64)
3 + [ATTCAT] 251 (86.83)
3 + [TTTAAT] 279 (89.18)
3 + [ATCAAT] 309 (85.32)
3 + .ATTAAT. 379 (100.00)
3 + [AATAAT] 463 (89.19)
3 - [ATTATT] 463 (89.19)
3 - .ATTAAT. 379 (100.00)
3 - [ATTGAT] 309 (85.32)
3 - [ATTAAA] 279 (89.18)
3 - [ATGAAT] 251 (86.83)
3 - [ATTTAT] 126 (89.64)
3 - [ATTTAT] 51 (89.64)
4 + [ATAAAT] 5 (89.64)
4 + [AATAAT] 28 (89.19)
4 + [AATAAT] 31 (89.19)
4 + [ATTTAT] 45 (89.64)
4 + [ATTATT] 319 (89.19)
4 + [ATTCAT] 441 (86.83)
4 + [ATGAAT] 445 (86.83)
4 + [ATTAAA] 556 (89.18)
4 - [TTTAAT] 556 (89.18)
4 - [ATTCAT] 445 (86.83)
4 - [ATGAAT] 441 (86.83)
4 - [AATAAT] 319 (89.19)
4 - [ATAAAT] 45 (89.64)
4 - [ATTATT] 31 (89.19)
4 - [ATTATT] 28 (89.19)
4 - [ATTTAT] 5 (89.64)
5 + [ATTTAT] 387 (89.64)
5 + [TTTAAT] 479 (89.18)
5 + [ATTATT] 483 (89.19)
5 - [AATAAT] 483 (89.19)
5 - [ATTAAA] 479 (89.18)
5 - [ATAAAT] 387 (89.64)
6 + [ATTTAT] 66 (89.64)
6 + [ATTCAT] 323 (86.83)
6 + [ATTCAT] 327 (86.83)
6 + [TTTAAT] 359 (89.18)
6 + [ATTTAT] 438 (89.64)
6 + [ATAAAT] 605 (89.64)
6 + [AATAAT] 608 (89.19)
6 + [ATTCAT] 755 (86.83)
6 + [ATGAAT] 1165 (86.83)
6 + [ATTGAT] 1229 (85.32)
6 + [ATTGAT] 1264 (85.32)
6 + [AATAAT] 1295 (89.19)
6 + [TTTAAT] 1438 (89.18)
6 + [ATTTAT] 1715 (89.64)
6 - [ATAAAT] 1715 (89.64)
6 - [ATTAAA] 1438 (89.18)
6 - [ATTATT] 1295 (89.19)
6 - [ATCAAT] 1264 (85.32)
6 - [ATCAAT] 1229 (85.32)
6 - [ATTCAT] 1165 (86.83)
6 - [ATGAAT] 755 (86.83)
6 - [ATTATT] 608 (89.19)
6 - [ATTTAT] 605 (89.64)
6 - [ATAAAT] 438 (89.64)
6 - [ATTAAA] 359 (89.18)
6 - [ATGAAT] 327 (86.83)
6 - [ATGAAT] 323 (86.83)
6 - [ATAAAT] 66 (89.64)
7 + [ATTTAT] 50 (89.64)
7 + [TTTAAT] 122 (89.18)
7 + [ATTTAT] 126 (89.64)
7 + [ATAAAT] 137 (89.64)
7 + [TTTAAT] 260 (89.18)
7 - [ATTAAA] 260 (89.18)
7 - [ATTTAT] 137 (89.64)
7 - [ATAAAT] 126 (89.64)
7 - [ATTAAA] 122 (89.18)
7 - [ATAAAT] 50 (89.64)
8 + [ATTGAT] 34 (85.32)
8 + [ATTAAA] 92 (89.18)
8 + [ATTATT] 105 (89.19)
8 + [ATTTAT] 108 (89.64)
8 + [ATAAAT] 194 (89.64)
8 + [ATTAAA] 198 (89.18)
8 + [ATTATT] 323 (89.19)
8 + [ATTATT] 326 (89.19)
8 + .ATTAAT. 353 (100.00)
8 + [ATTATT] 402 (89.19)
8 + [ATTCAT] 431 (86.83)
8 + [TTTAAT] 468 (89.18)
8 - [ATTAAA] 468 (89.18)
8 - [ATGAAT] 431 (86.83)
8 - [AATAAT] 402 (89.19)
8 - .ATTAAT. 353 (100.00)
8 - [AATAAT] 326 (89.19)
8 - [AATAAT] 323 (89.19)
8 - [TTTAAT] 198 (89.18)
8 - [ATTTAT] 194 (89.64)
8 - [ATAAAT] 108 (89.64)
8 - [AATAAT] 105 (89.19)
8 - [TTTAAT] 92 (89.18)
8 - [ATCAAT] 34 (85.32)
9 + [ATAAAT] 198 (89.64)
9 + [AATAAT] 242 (89.19)
9 + [ATAAAT] 261 (89.64)
9 + [AATAAT] 264 (89.19)
9 + [TTTAAT] 272 (89.18)
9 + [TTTAAT] 442 (89.18)
9 + [ATTTAT] 576 (89.64)
9 + [ATTTAT] 735 (89.64)
9 + [ATTATT] 838 (89.19)
9 + [ATTATT] 841 (89.19)
9 + [ATTAAA] 844 (89.18)
9 + [ATAAAT] 849 (89.64)
9 + [ATAAAT] 853 (89.64)
9 + [ATTTAT] 919 (89.64)
9 + [ATTTAT] 928 (89.64)
9 - [ATAAAT] 928 (89.64)
9 - [ATAAAT] 919 (89.64)
9 - [ATTTAT] 853 (89.64)
9 - [ATTTAT] 849 (89.64)
9 - [TTTAAT] 844 (89.18)
9 - [AATAAT] 841 (89.19)
9 - [AATAAT] 838 (89.19)
9 - [ATAAAT] 735 (89.64)
9 - [ATAAAT] 576 (89.64)
9 - [ATTAAA] 442 (89.18)
9 - [ATTAAA] 272 (89.18)
9 - [ATTATT] 264 (89.19)
9 - [ATTTAT] 261 (89.64)
9 - [ATTATT] 242 (89.19)
9 - [ATTTAT] 198 (89.64)
10 + .ATTAAT. 247 (100.00)
10 + [AATAAT] 318 (89.19)
10 + [TTTAAT] 331 (89.18)
10 + [ATAAAT] 534 (89.64)
10 + [ATTGAT] 583 (85.32)
10 + [ATTTAT] 808 (89.64)
10 + [TTTAAT] 824 (89.18)
10 + [TTTAAT] 872 (89.18)
10 + [ATTTAT] 948 (89.64)
10 + [AATAAT] 1336 (89.19)
10 + [ATAAAT] 1340 (89.64)
10 + [ATTAAA] 1344 (89.18)
10 + [TTTAAT] 1446 (89.18)
10 + [ATCAAT] 1475 (85.32)
10 + [TTTAAT] 1524 (89.18)
10 + [ATTTAT] 1701 (89.64)
10 + [ATTGAT] 1722 (85.32)
10 + [AATAAT] 1817 (89.19)
10 + [TTTAAT] 1869 (89.18)
10 + [ATTAAA] 1917 (89.18)
10 + [ATCAAT] 1922 (85.32)
10 + [TTTAAT] 1973 (89.18)
10 + [ATTTAT] 1979 (89.64)
10 + [ATTATT] 1983 (89.19)
10 - [AATAAT] 1983 (89.19)
10 - [ATAAAT] 1979 (89.64)
10 - [ATTAAA] 1973 (89.18)
10 - [ATTGAT] 1922 (85.32)
10 - [TTTAAT] 1917 (89.18)
10 - [ATTAAA] 1869 (89.18)
10 - [ATTATT] 1817 (89.19)
10 - [ATCAAT] 1722 (85.32)
10 - [ATAAAT] 1701 (89.64)
10 - [ATTAAA] 1524 (89.18)
10 - [ATTGAT] 1475 (85.32)
10 - [ATTAAA] 1446 (89.18)
10 - [TTTAAT] 1344 (89.18)
10 - [ATTTAT] 1340 (89.64)
10 - [ATTATT] 1336 (89.19)
10 - [ATAAAT] 948 (89.64)
10 - [ATTAAA] 872 (89.18)
10 - [ATTAAA] 824 (89.18)
10 - [ATAAAT] 808 (89.64)
10 - [ATCAAT] 583 (85.32)
10 - [ATTTAT] 534 (89.64)
10 - [ATTAAA] 331 (89.18)
10 - [ATTATT] 318 (89.19)
10 - .ATTAAT. 247 (100.00)
11 + [ATAAAT] 38 (89.64)
11 + [AATAAT] 650 (89.19)
11 + [ATTATT] 662 (89.19)
11 + [ATTCAT] 919 (86.83)
11 + [AATAAT] 1260 (89.19)
11 + [AATAAT] 1467 (89.19)
11 + [AATAAT] 1475 (89.19)
11 + [AATAAT] 1513 (89.19)
11 + [AATAAT] 1516 (89.19)
11 + [ATTAAA] 1606 (89.18)
11 - [TTTAAT] 1606 (89.18)
11 - [ATTATT] 1516 (89.19)
11 - [ATTATT] 1513 (89.19)
11 - [ATTATT] 1475 (89.19)
11 - [ATTATT] 1467 (89.19)
11 - [ATTATT] 1260 (89.19)
11 - [ATGAAT] 919 (86.83)
11 - [AATAAT] 662 (89.19)
11 - [ATTATT] 650 (89.19)
11 - [ATTTAT] 38 (89.64)
12 + .ATTAAT. 79 (100.00)
12 + [ATTCAT] 601 (86.83)
12 + [ATAAAT] 635 (89.64)
12 + [ATAAAT] 646 (89.64)
12 + [ATCAAT] 800 (85.32)
12 + [AATAAT] 1059 (89.19)
12 - [ATTATT] 1059 (89.19)
12 - [ATTGAT] 800 (85.32)
12 - [ATTTAT] 646 (89.64)
12 - [ATTTAT] 635 (89.64)
12 - [ATGAAT] 601 (86.83)
12 - .ATTAAT. 79 (100.00)
13 + [ATAAAT] 91 (89.64)
13 + [ATTTAT] 105 (89.64)
13 + [TTTAAT] 130 (89.18)
13 + [ATTTAT] 134 (89.64)
13 + [ATTATT] 138 (89.19)
13 + [ATCAAT] 163 (85.32)
13 + [ATTAAA] 207 (89.18)
13 + [ATTATT] 303 (89.19)
13 + [ATTGAT] 306 (85.32)
13 - [ATCAAT] 306 (85.32)
13 - [AATAAT] 303 (89.19)
13 - [TTTAAT] 207 (89.18)
13 - [ATTGAT] 163 (85.32)
13 - [AATAAT] 138 (89.19)
13 - [ATAAAT] 134 (89.64)
13 - [ATTAAA] 130 (89.18)
13 - [ATAAAT] 105 (89.64)
13 - [ATTTAT] 91 (89.64)
14 + [ATTAAA] 110 (89.18)
14 + [ATCAAT] 142 (85.32)
14 + [ATTTAT] 256 (89.64)
14 + [ATGAAT] 302 (86.83)
14 + [ATTCAT] 334 (86.83)
14 + [ATTCAT] 375 (86.83)
14 + [ATAAAT] 518 (89.64)
14 + .ATTAAT. 817 (100.00)
14 + [TTTAAT] 824 (89.18)
14 + [ATTATT] 828 (89.19)
14 + .ATTAAT. 831 (100.00)
14 + [TTTAAT] 938 (89.18)
14 + [AATAAT] 1029 (89.19)
14 + [AATAAT] 1032 (89.19)
14 + [TTTAAT] 1052 (89.18)
14 + [TTTAAT] 1401 (89.18)
14 + [TTTAAT] 1443 (89.18)
14 + [TTTAAT] 1448 (89.18)
14 - [ATTAAA] 1448 (89.18)
14 - [ATTAAA] 1443 (89.18)
14 - [ATTAAA] 1401 (89.18)
14 - [ATTAAA] 1052 (89.18)
14 - [ATTATT] 1032 (89.19)
14 - [ATTATT] 1029 (89.19)
14 - [ATTAAA] 938 (89.18)
14 - .ATTAAT. 831 (100.00)
14 - [AATAAT] 828 (89.19)
14 - [ATTAAA] 824 (89.18)
14 - .ATTAAT. 817 (100.00)
14 - [ATTTAT] 518 (89.64)
14 - [ATGAAT] 375 (86.83)
14 - [ATGAAT] 334 (86.83)
14 - [ATTCAT] 302 (86.83)
14 - [ATAAAT] 256 (89.64)
14 - [ATTGAT] 142 (85.32)
14 - [TTTAAT] 110 (89.18)
15 + [ATTCAT] 71 (86.83)
15 + [ATTTAT] 75 (89.64)
15 + [ATTATT] 313 (89.19)
15 + [ATTCAT] 498 (86.83)
15 - [ATGAAT] 498 (86.83)
15 - [AATAAT] 313 (89.19)
15 - [ATAAAT] 75 (89.64)
15 - [ATGAAT] 71 (86.83)
16 + [ATTATT] 208 (89.19)
16 + [TTTAAT] 214 (89.18)
16 - [ATTAAA] 214 (89.18)
16 - [AATAAT] 208 (89.19)
17 + [AATAAT] 16 (89.19)
17 + [ATTAAA] 97 (89.18)
17 + [ATTTAT] 149 (89.64)
17 + [ATTGAT] 158 (85.32)
17 + [ATCAAT] 198 (85.32)
17 + [TTTAAT] 263 (89.18)
17 + [ATCAAT] 507 (85.32)
17 + [ATAAAT] 517 (89.64)
17 + .ATTAAT. 540 (100.00)
17 + [ATAAAT] 572 (89.64)
17 + [TTTAAT] 620 (89.18)
17 - [ATTAAA] 620 (89.18)
17 - [ATTTAT] 572 (89.64)
17 - .ATTAAT. 540 (100.00)
17 - [ATTTAT] 517 (89.64)
17 - [ATTGAT] 507 (85.32)
17 - [ATTAAA] 263 (89.18)
17 - [ATTGAT] 198 (85.32)
17 - [ATCAAT] 158 (85.32)
17 - [ATAAAT] 149 (89.64)
17 - [TTTAAT] 97 (89.18)
17 - [ATTATT] 16 (89.19)
18 + [ATTTAT] 12 (89.64)
18 + [ATTTAT] 19 (89.64)
18 + [ATGAAT] 36 (86.83)
18 + .ATTAAT. 83 (100.00)
18 + .ATTAAT. 884 (100.00)
18 + [ATTTAT] 977 (89.64)
18 + [ATAAAT] 981 (89.64)
18 + [ATTATT] 1035 (89.19)
18 + [ATTATT] 1045 (89.19)
18 + [ATTATT] 1071 (89.19)
18 + [ATTTAT] 1074 (89.64)
18 + [ATAAAT] 1154 (89.64)
18 + [ATTGAT] 1165 (85.32)
18 - [ATCAAT] 1165 (85.32)
18 - [ATTTAT] 1154 (89.64)
18 - [ATAAAT] 1074 (89.64)
18 - [AATAAT] 1071 (89.19)
18 - [AATAAT] 1045 (89.19)
18 - [AATAAT] 1035 (89.19)
18 - [ATTTAT] 981 (89.64)
18 - [ATAAAT] 977 (89.64)
18 - .ATTAAT. 884 (100.00)
18 - .ATTAAT. 83 (100.00)
18 - [ATTCAT] 36 (86.83)
18 - [ATAAAT] 19 (89.64)
18 - [ATAAAT] 12 (89.64)
19 + [ATGAAT] 556 (86.83)
19 + [ATTAAA] 756 (89.18)
19 + [TTTAAT] 915 (89.18)
19 + [ATGAAT] 919 (86.83)
19 + [TTTAAT] 926 (89.18)
19 + [ATTTAT] 982 (89.64)
19 + [ATCAAT] 986 (85.32)
19 + [ATTATT] 1089 (89.19)
19 + [TTTAAT] 1160 (89.18)
19 + [TTTAAT] 1293 (89.18)
19 + [ATTAAA] 1808 (89.18)
19 - [TTTAAT] 1808 (89.18)
19 - [ATTAAA] 1293 (89.18)
19 - [ATTAAA] 1160 (89.18)
19 - [AATAAT] 1089 (89.19)
19 - [ATTGAT] 986 (85.32)
19 - [ATAAAT] 982 (89.64)
19 - [ATTAAA] 926 (89.18)
19 - [ATTCAT] 919 (86.83)
19 - [ATTAAA] 915 (89.18)
19 - [TTTAAT] 756 (89.18)
19 - [ATTCAT] 556 (86.83)
20 + [ATGAAT] 154 (86.83)
20 + [ATTTAT] 158 (89.64)
20 + .ATTAAT. 237 (100.00)
20 - .ATTAAT. 237 (100.00)
20 - [ATAAAT] 158 (89.64)
20 - [ATTCAT] 154 (86.83)
21 + [TTTAAT] 42 (89.18)
21 + .ATTAAT. 46 (100.00)
21 + [ATTGAT] 80 (85.32)
21 + [TTTAAT] 757 (89.18)
21 + [ATTATT] 859 (89.19)
21 + [AATAAT] 909 (89.19)
21 + .ATTAAT. 941 (100.00)
21 + [ATAAAT] 1197 (89.64)
21 + [ATGAAT] 1253 (86.83)
21 + [ATAAAT] 1257 (89.64)
21 + [ATTTAT] 1439 (89.64)
21 + [ATTTAT] 1487 (89.64)
21 + [ATAAAT] 1567 (89.64)
21 + [ATTAAA] 1571 (89.18)
21 + [TTTAAT] 1654 (89.18)
21 + [ATTAAA] 1660 (89.18)
21 + [ATTTAT] 1689 (89.64)
21 + [TTTAAT] 1709 (89.18)
21 + [ATGAAT] 1799 (86.83)
21 + [ATTATT] 1834 (89.19)
21 - [AATAAT] 1834 (89.19)
21 - [ATTCAT] 1799 (86.83)
21 - [ATTAAA] 1709 (89.18)
21 - [ATAAAT] 1689 (89.64)
21 - [TTTAAT] 1660 (89.18)
21 - [ATTAAA] 1654 (89.18)
21 - [TTTAAT] 1571 (89.18)
21 - [ATTTAT] 1567 (89.64)
21 - [ATAAAT] 1487 (89.64)
21 - [ATAAAT] 1439 (89.64)
21 - [ATTTAT] 1257 (89.64)
21 - [ATTCAT] 1253 (86.83)
21 - [ATTTAT] 1197 (89.64)
21 - .ATTAAT. 941 (100.00)
21 - [ATTATT] 909 (89.19)
21 - [AATAAT] 859 (89.19)
21 - [ATTAAA] 757 (89.18)
21 - [ATCAAT] 80 (85.32)
21 - .ATTAAT. 46 (100.00)
21 - [ATTAAA] 42 (89.18)
22 + [ATTAAA] 31 (89.18)
22 + [ATAAAT] 38 (89.64)
22 + [ATGAAT] 94 (86.83)
22 + [ATAAAT] 211 (89.64)
22 + [ATTCAT] 231 (86.83)
22 + [ATAAAT] 332 (89.64)
22 + [TTTAAT] 491 (89.18)
22 + [ATTAAA] 532 (89.18)
22 + [TTTAAT] 574 (89.18)
22 + [ATTAAA] 611 (89.18)
22 + [ATTAAA] 861 (89.18)
22 + [ATCAAT] 952 (85.32)
22 - [ATTGAT] 952 (85.32)
22 - [TTTAAT] 861 (89.18)
22 - [TTTAAT] 611 (89.18)
22 - [ATTAAA] 574 (89.18)
22 - [TTTAAT] 532 (89.18)
22 - [ATTAAA] 491 (89.18)
22 - [ATTTAT] 332 (89.64)
22 - [ATGAAT] 231 (86.83)
22 - [ATTTAT] 211 (89.64)
22 - [ATTCAT] 94 (86.83)
22 - [ATTTAT] 38 (89.64)
22 - [TTTAAT] 31 (89.18)
23 + [ATGAAT] 48 (86.83)
23 + [ATCAAT] 595 (85.32)
23 + [TTTAAT] 884 (89.18)
23 + [ATTATT] 901 (89.19)
23 + [TTTAAT] 1175 (89.18)
23 + [ATTATT] 1179 (89.19)
23 - [AATAAT] 1179 (89.19)
23 - [ATTAAA] 1175 (89.18)
23 - [AATAAT] 901 (89.19)
23 - [ATTAAA] 884 (89.18)
23 - [ATTGAT] 595 (85.32)
23 - [ATTCAT] 48 (86.83)
24 + [TTTAAT] 75 (89.18)
24 + .ATTAAT. 79 (100.00)
24 + .ATTAAT. 83 (100.00)
24 + [AATAAT] 86 (89.19)
24 + [ATTGAT] 90 (85.32)
24 + [TTTAAT] 106 (89.18)
24 + [ATTGAT] 138 (85.32)
24 + .ATTAAT. 332 (100.00)
24 + [ATTATT] 336 (89.19)
24 + .ATTAAT. 526 (100.00)
24 + [AATAAT] 556 (89.19)
24 + [ATTTAT] 744 (89.64)
24 + [ATTCAT] 1121 (86.83)
24 - [ATGAAT] 1121 (86.83)
24 - [ATAAAT] 744 (89.64)
24 - [ATTATT] 556 (89.19)
24 - .ATTAAT. 526 (100.00)
24 - [AATAAT] 336 (89.19)
24 - .ATTAAT. 332 (100.00)
24 - [ATCAAT] 138 (85.32)
24 - [ATTAAA] 106 (89.18)
24 - [ATCAAT] 90 (85.32)
24 - [ATTATT] 86 (89.19)
24 - .ATTAAT. 83 (100.00)
24 - .ATTAAT. 79 (100.00)
24 - [ATTAAA] 75 (89.18)
25 + .ATTAAT. 60 (100.00)
25 + [ATAAAT] 64 (89.64)
25 + [ATGAAT] 70 (86.83)
25 + [TTTAAT] 144 (89.18)
25 + [ATTATT] 238 (89.19)
25 + [ATTCAT] 366 (86.83)
25 + .ATTAAT. 522 (100.00)
25 + [ATTTAT] 939 (89.64)
25 - [ATAAAT] 939 (89.64)
25 - .ATTAAT. 522 (100.00)
25 - [ATGAAT] 366 (86.83)
25 - [AATAAT] 238 (89.19)
25 - [ATTAAA] 144 (89.18)
25 - [ATTCAT] 70 (86.83)
25 - [ATTTAT] 64 (89.64)
25 - .ATTAAT. 60 (100.00)
26 + [ATTATT] 12 (89.19)
26 + [ATTTAT] 22 (89.64)
26 + [ATTTAT] 34 (89.64)
26 + [ATAAAT] 72 (89.64)
26 + [AATAAT] 75 (89.19)
26 + .ATTAAT. 79 (100.00)
26 + [ATTTAT] 97 (89.64)
26 + [TTTAAT] 105 (89.18)
26 + [ATGAAT] 185 (86.83)
26 + [TTTAAT] 209 (89.18)
26 + [TTTAAT] 267 (89.18)
26 + [ATCAAT] 297 (85.32)
26 - [ATTGAT] 297 (85.32)
26 - [ATTAAA] 267 (89.18)
26 - [ATTAAA] 209 (89.18)
26 - [ATTCAT] 185 (86.83)
26 - [ATTAAA] 105 (89.18)
26 - [ATAAAT] 97 (89.64)
26 - .ATTAAT. 79 (100.00)
26 - [ATTATT] 75 (89.19)
26 - [ATTTAT] 72 (89.64)
26 - [ATAAAT] 34 (89.64)
26 - [ATAAAT] 22 (89.64)
26 - [AATAAT] 12 (89.19)
27 + [ATAAAT] 21 (89.64)
27 + .ATTAAT. 25 (100.00)
27 + [ATTCAT] 223 (86.83)
27 - [ATGAAT] 223 (86.83)
27 - .ATTAAT. 25 (100.00)
27 - [ATTTAT] 21 (89.64)
28 + .ATTAAT. 64 (100.00)
28 + [TTTAAT] 80 (89.18)
28 + [ATTATT] 329 (89.19)
28 + [ATTAAA] 447 (89.18)
28 + [TTTAAT] 456 (89.18)
28 + [ATTGAT] 460 (85.32)
28 + [ATCAAT] 464 (85.32)
28 + [ATTATT] 478 (89.19)
28 + [ATCAAT] 514 (85.32)
28 + [ATTGAT] 608 (85.32)
28 + [AATAAT] 714 (89.19)
28 + .ATTAAT. 718 (100.00)
28 + [AATAAT] 883 (89.19)
28 + [ATTTAT] 936 (89.64)
28 + [ATTCAT] 1109 (86.83)
28 + [ATGAAT] 1136 (86.83)
28 - [ATTCAT] 1136 (86.83)
28 - [ATGAAT] 1109 (86.83)
28 - [ATAAAT] 936 (89.64)
28 - [ATTATT] 883 (89.19)
28 - .ATTAAT. 718 (100.00)
28 - [ATTATT] 714 (89.19)
28 - [ATCAAT] 608 (85.32)
28 - [ATTGAT] 514 (85.32)
28 - [AATAAT] 478 (89.19)
28 - [ATTGAT] 464 (85.32)
28 - [ATCAAT] 460 (85.32)
28 - [ATTAAA] 456 (89.18)
28 - [TTTAAT] 447 (89.18)
28 - [AATAAT] 329 (89.19)
28 - [ATTAAA] 80 (89.18)
28 - .ATTAAT. 64 (100.00)
29 + [ATTCAT] 108 (86.83)
29 + .ATTAAT. 117 (100.00)
29 - .ATTAAT. 117 (100.00)
29 - [ATGAAT] 108 (86.83)
30 + [ATCAAT] 213 (85.32)
30 + [AATAAT] 237 (89.19)
30 + [TTTAAT] 242 (89.18)
30 - [ATTAAA] 242 (89.18)
30 - [ATTATT] 237 (89.19)
30 - [ATTGAT] 213 (85.32)
31 + [ATTCAT] 47 (86.83)
31 + [TTTAAT] 72 (89.18)
31 + [ATTTAT] 76 (89.64)
31 + [AATAAT] 109 (89.19)
31 + [AATAAT] 144 (89.19)
31 + [AATAAT] 147 (89.19)
31 + [ATTATT] 187 (89.19)
31 + [ATTAAA] 190 (89.18)
31 + [ATAAAT] 263 (89.64)
31 + [TTTAAT] 380 (89.18)
31 + [ATTAAA] 384 (89.18)
31 + [ATTAAA] 437 (89.18)
31 + [ATAAAT] 670 (89.64)
31 - [ATTTAT] 670 (89.64)
31 - [TTTAAT] 437 (89.18)
31 - [TTTAAT] 384 (89.18)
31 - [ATTAAA] 380 (89.18)
31 - [ATTTAT] 263 (89.64)
31 - [TTTAAT] 190 (89.18)
31 - [AATAAT] 187 (89.19)
31 - [ATTATT] 147 (89.19)
31 - [ATTATT] 144 (89.19)
31 - [ATTATT] 109 (89.19)
31 - [ATAAAT] 76 (89.64)
31 - [ATTAAA] 72 (89.18)
31 - [ATGAAT] 47 (86.83)
32 + [TTTAAT] 35 (89.18)
32 + [ATAAAT] 39 (89.64)
32 + [TTTAAT] 53 (89.18)
32 + [ATTATT] 95 (89.19)
32 + [ATAAAT] 223 (89.64)
32 + [ATTATT] 376 (89.19)
32 + .ATTAAT. 379 (100.00)
32 + [ATAAAT] 383 (89.64)
32 + [TTTAAT] 399 (89.18)
32 + [AATAAT] 463 (89.19)
32 - [ATTATT] 463 (89.19)
32 - [ATTAAA] 399 (89.18)
32 - [ATTTAT] 383 (89.64)
32 - .ATTAAT. 379 (100.00)
32 - [AATAAT] 376 (89.19)
32 - [ATTTAT] 223 (89.64)
32 - [AATAAT] 95 (89.19)
32 - [ATTAAA] 53 (89.18)
32 - [ATTTAT] 39 (89.64)
32 - [ATTAAA] 35 (89.18)
33 + [ATAAAT] 18 (89.64)
33 + [ATTGAT] 44 (85.32)
33 + [ATTAAA] 92 (89.18)
33 + [TTTAAT] 129 (89.18)
33 + [ATTATT] 139 (89.19)
33 + [ATGAAT] 224 (86.83)
33 + [AATAAT] 232 (89.19)
33 + [AATAAT] 305 (89.19)
33 + [ATTTAT] 607 (89.64)
33 + [ATTTAT] 659 (89.64)
33 + [AATAAT] 814 (89.19)
33 + [ATGAAT] 882 (86.83)
33 + [ATTATT] 891 (89.19)
33 + [ATTAAA] 993 (89.18)
33 + [AATAAT] 1120 (89.19)
33 + [ATTCAT] 1144 (86.83)
33 + [ATGAAT] 1173 (86.83)
33 - [ATTCAT] 1173 (86.83)
33 - [ATGAAT] 1144 (86.83)
33 - [ATTATT] 1120 (89.19)
33 - [TTTAAT] 993 (89.18)
33 - [AATAAT] 891 (89.19)
33 - [ATTCAT] 882 (86.83)
33 - [ATTATT] 814 (89.19)
33 - [ATAAAT] 659 (89.64)
33 - [ATAAAT] 607 (89.64)
33 - [ATTATT] 305 (89.19)
33 - [ATTATT] 232 (89.19)
33 - [ATTCAT] 224 (86.83)
33 - [AATAAT] 139 (89.19)
33 - [ATTAAA] 129 (89.18)
33 - [TTTAAT] 92 (89.18)
33 - [ATCAAT] 44 (85.32)
33 - [ATTTAT] 18 (89.64)
34 + [ATCAAT] 2 (85.32)
34 + .ATTAAT. 33 (100.00)
34 + [ATTATT] 266 (89.19)
34 + .ATTAAT. 269 (100.00)
34 + [ATTCAT] 273 (86.83)
34 + [ATTTAT] 420 (89.64)
34 + [ATTTAT] 729 (89.64)
34 + [ATGAAT] 856 (86.83)
34 + [ATAAAT] 954 (89.64)
34 + [ATTTAT] 979 (89.64)
34 + [ATTCAT] 1007 (86.83)
34 + [ATAAAT] 1011 (89.64)
34 + [ATCAAT] 1076 (85.32)
34 + [ATTCAT] 1244 (86.83)
34 + [ATAAAT] 1344 (89.64)
34 + [TTTAAT] 1619 (89.18)
34 + [TTTAAT] 1681 (89.18)
34 + [ATTCAT] 1954 (86.83)
34 + [ATTGAT] 1973 (85.32)
34 + [ATTATT] 1977 (89.19)
34 - [AATAAT] 1977 (89.19)
34 - [ATCAAT] 1973 (85.32)
34 - [ATGAAT] 1954 (86.83)
34 - [ATTAAA] 1681 (89.18)
34 - [ATTAAA] 1619 (89.18)
34 - [ATTTAT] 1344 (89.64)
34 - [ATGAAT] 1244 (86.83)
34 - [ATTGAT] 1076 (85.32)
34 - [ATTTAT] 1011 (89.64)
34 - [ATGAAT] 1007 (86.83)
34 - [ATAAAT] 979 (89.64)
34 - [ATTTAT] 954 (89.64)
34 - [ATTCAT] 856 (86.83)
34 - [ATAAAT] 729 (89.64)
34 - [ATAAAT] 420 (89.64)
34 - [ATGAAT] 273 (86.83)
34 - .ATTAAT. 269 (100.00)
34 - [AATAAT] 266 (89.19)
34 - .ATTAAT. 33 (100.00)
34 - [ATTGAT] 2 (85.32)
35 + [TTTAAT] 129 (89.18)
35 + [ATAAAT] 155 (89.64)
35 + [ATGAAT] 218 (86.83)
35 + [ATTCAT] 306 (86.83)
35 + [ATTATT] 310 (89.19)
35 + [ATTATT] 375 (89.19)
35 + .ATTAAT. 404 (100.00)
35 + [TTTAAT] 456 (89.18)
35 + [ATTTAT] 464 (89.64)
35 + [ATTATT] 480 (89.19)
35 + [ATTGAT] 503 (85.32)
35 + [ATTAAA] 564 (89.18)
35 + [ATAAAT] 635 (89.64)
35 + [ATTATT] 959 (89.19)
35 - [AATAAT] 959 (89.19)
35 - [ATTTAT] 635 (89.64)
35 - [TTTAAT] 564 (89.18)
35 - [ATCAAT] 503 (85.32)
35 - [AATAAT] 480 (89.19)
35 - [ATAAAT] 464 (89.64)
35 - [ATTAAA] 456 (89.18)
35 - .ATTAAT. 404 (100.00)
35 - [AATAAT] 375 (89.19)
35 - [AATAAT] 310 (89.19)
35 - [ATGAAT] 306 (86.83)
35 - [ATTCAT] 218 (86.83)
35 - [ATTTAT] 155 (89.64)
35 - [ATTAAA] 129 (89.18)
36 + [ATTTAT] 96 (89.64)
36 + [ATTCAT] 269 (86.83)
36 + [ATAAAT] 341 (89.64)
36 + [ATTGAT] 345 (85.32)
36 + [ATTCAT] 387 (86.83)
36 + [ATTTAT] 666 (89.64)
36 + [ATTCAT] 670 (86.83)
36 + [ATTATT] 747 (89.19)
36 + [ATTTAT] 836 (89.64)
36 + .ATTAAT. 883 (100.00)
36 + [TTTAAT] 1010 (89.18)
36 + [ATTAAA] 1041 (89.18)
36 + [TTTAAT] 1090 (89.18)
36 + [TTTAAT] 1098 (89.18)
36 + [ATGAAT] 1148 (86.83)
36 + [ATAAAT] 1600 (89.64)
36 + [ATTGAT] 1775 (85.32)
36 - [ATCAAT] 1775 (85.32)
36 - [ATTTAT] 1600 (89.64)
36 - [ATTCAT] 1148 (86.83)
36 - [ATTAAA] 1098 (89.18)
36 - [ATTAAA] 1090 (89.18)
36 - [TTTAAT] 1041 (89.18)
36 - [ATTAAA] 1010 (89.18)
36 - .ATTAAT. 883 (100.00)
36 - [ATAAAT] 836 (89.64)
36 - [AATAAT] 747 (89.19)
36 - [ATGAAT] 670 (86.83)
36 - [ATAAAT] 666 (89.64)
36 - [ATGAAT] 387 (86.83)
36 - [ATCAAT] 345 (85.32)
36 - [ATTTAT] 341 (89.64)
36 - [ATGAAT] 269 (86.83)
36 - [ATAAAT] 96 (89.64)
37 + [TTTAAT] 91 (89.18)
37 + [ATAAAT] 152 (89.64)
37 + [ATTTAT] 201 (89.64)
37 + [ATTTAT] 408 (89.64)
37 + [ATTCAT] 477 (86.83)
37 + [TTTAAT] 497 (89.18)
37 + .ATTAAT. 648 (100.00)
37 + [ATTTAT] 733 (89.64)
37 + [ATTATT] 922 (89.19)
37 + [ATGAAT] 1103 (86.83)
37 + [TTTAAT] 1318 (89.18)
37 + [AATAAT] 1364 (89.19)
37 + [ATTATT] 1439 (89.19)
37 + [ATTCAT] 1519 (86.83)
37 + [ATGAAT] 1544 (86.83)
37 + .ATTAAT. 1703 (100.00)
37 + [AATAAT] 1706 (89.19)
37 + [ATTTAT] 1808 (89.64)
37 - [ATAAAT] 1808 (89.64)
37 - [ATTATT] 1706 (89.19)
37 - .ATTAAT. 1703 (100.00)
37 - [ATTCAT] 1544 (86.83)
37 - [ATGAAT] 1519 (86.83)
37 - [AATAAT] 1439 (89.19)
37 - [ATTATT] 1364 (89.19)
37 - [ATTAAA] 1318 (89.18)
37 - [ATTCAT] 1103 (86.83)
37 - [AATAAT] 922 (89.19)
37 - [ATAAAT] 733 (89.64)
37 - .ATTAAT. 648 (100.00)
37 - [ATTAAA] 497 (89.18)
37 - [ATGAAT] 477 (86.83)
37 - [ATAAAT] 408 (89.64)
37 - [ATAAAT] 201 (89.64)
37 - [ATTTAT] 152 (89.64)
37 - [ATTAAA] 91 (89.18)
38 + [ATGAAT] 37 (86.83)
38 + [ATTCAT] 60 (86.83)
38 + [ATAAAT] 250 (89.64)
38 - [ATTTAT] 250 (89.64)
38 - [ATGAAT] 60 (86.83)
38 - [ATTCAT] 37 (86.83)
39 + [ATAAAT] 20 (89.64)
39 + [ATTATT] 24 (89.19)
39 + [TTTAAT] 31 (89.18)
39 + [TTTAAT] 49 (89.18)
39 + .ATTAAT. 71 (100.00)
39 + [TTTAAT] 89 (89.18)
39 + [TTTAAT] 99 (89.18)
39 + [ATAAAT] 123 (89.64)
39 + [ATAAAT] 240 (89.64)
39 + [ATGAAT] 259 (86.83)
39 + [TTTAAT] 309 (89.18)
39 + [ATTAAA] 325 (89.18)
39 + [ATTAAA] 359 (89.18)
39 + [ATTTAT] 407 (89.64)
39 + [TTTAAT] 423 (89.18)
39 + [ATGAAT] 594 (86.83)
39 + [ATAAAT] 687 (89.64)
39 + [ATTAAA] 697 (89.18)
39 + [ATAAAT] 750 (89.64)
39 - [ATTTAT] 750 (89.64)
39 - [TTTAAT] 697 (89.18)
39 - [ATTTAT] 687 (89.64)
39 - [ATTCAT] 594 (86.83)
39 - [ATTAAA] 423 (89.18)
39 - [ATAAAT] 407 (89.64)
39 - [TTTAAT] 359 (89.18)
39 - [TTTAAT] 325 (89.18)
39 - [ATTAAA] 309 (89.18)
39 - [ATTCAT] 259 (86.83)
39 - [ATTTAT] 240 (89.64)
39 - [ATTTAT] 123 (89.64)
39 - [ATTAAA] 99 (89.18)
39 - [ATTAAA] 89 (89.18)
39 - .ATTAAT. 71 (100.00)
39 - [ATTAAA] 49 (89.18)
39 - [ATTAAA] 31 (89.18)
39 - [AATAAT] 24 (89.19)
39 - [ATTTAT] 20 (89.64)
40 + [ATAAAT] 78 (89.64)
40 + .ATTAAT. 307 (100.00)
40 + [TTTAAT] 312 (89.18)
40 + [TTTAAT] 349 (89.18)
40 + [ATTTAT] 450 (89.64)
40 + [TTTAAT] 625 (89.18)
40 + [ATTATT] 707 (89.19)
40 + [AATAAT] 728 (89.19)
40 + [AATAAT] 731 (89.19)
40 - [ATTATT] 731 (89.19)
40 - [ATTATT] 728 (89.19)
40 - [AATAAT] 707 (89.19)
40 - [ATTAAA] 625 (89.18)
40 - [ATAAAT] 450 (89.64)
40 - [ATTAAA] 349 (89.18)
40 - [ATTAAA] 312 (89.18)
40 - .ATTAAT. 307 (100.00)
40 - [ATTTAT] 78 (89.64)
41 + [TTTAAT] 93 (89.18)
41 + [ATGAAT] 113 (86.83)
41 + [TTTAAT] 278 (89.18)
41 + .ATTAAT. 282 (100.00)
41 + [ATTTAT] 348 (89.64)
41 + [ATCAAT] 526 (85.32)
41 + [ATTGAT] 530 (85.32)
41 - [ATCAAT] 530 (85.32)
41 - [ATTGAT] 526 (85.32)
41 - [ATAAAT] 348 (89.64)
41 - .ATTAAT. 282 (100.00)
41 - [ATTAAA] 278 (89.18)
41 - [ATTCAT] 113 (86.83)
41 - [ATTAAA] 93 (89.18)
42 + [ATTTAT] 53 (89.64)
42 + [ATTTAT] 69 (89.64)
42 - [ATAAAT] 69 (89.64)
42 - [ATAAAT] 53 (89.64)
43 + [ATTTAT] 629 (89.64)
43 - [ATAAAT] 629 (89.64)
44 + [ATTGAT] 10 (85.32)
44 + [ATAAAT] 102 (89.64)
44 + [ATGAAT] 139 (86.83)
44 + [ATTTAT] 373 (89.64)
44 + [AATAAT] 381 (89.19)
44 + [AATAAT] 618 (89.19)
44 + [ATTATT] 622 (89.19)
44 + [TTTAAT] 626 (89.18)
44 + [ATAAAT] 731 (89.64)
44 + [ATTCAT] 766 (86.83)
44 + [ATTCAT] 770 (86.83)
44 - [ATGAAT] 770 (86.83)
44 - [ATGAAT] 766 (86.83)
44 - [ATTTAT] 731 (89.64)
44 - [ATTAAA] 626 (89.18)
44 - [AATAAT] 622 (89.19)
44 - [ATTATT] 618 (89.19)
44 - [ATTATT] 381 (89.19)
44 - [ATAAAT] 373 (89.64)
44 - [ATTCAT] 139 (86.83)
44 - [ATTTAT] 102 (89.64)
44 - [ATCAAT] 10 (85.32)
45 + [ATAAAT] 63 (89.64)
45 + [ATTGAT] 175 (85.32)
45 + [ATTAAA] 185 (89.18)
45 + [ATTATT] 496 (89.19)
45 + [ATTCAT] 515 (86.83)
45 + .ATTAAT. 531 (100.00)
45 + [AATAAT] 673 (89.19)
45 + [AATAAT] 746 (89.19)
45 + [ATTTAT] 776 (89.64)
45 + [TTTAAT] 838 (89.18)
45 + [ATTCAT] 1192 (86.83)
45 + [ATTAAA] 1343 (89.18)
45 + [ATTTAT] 1543 (89.64)
45 + .ATTAAT. 1703 (100.00)
45 + [ATTAAA] 1759 (89.18)
45 + [AATAAT] 1809 (89.19)
45 - [ATTATT] 1809 (89.19)
45 - [TTTAAT] 1759 (89.18)
45 - .ATTAAT. 1703 (100.00)
45 - [ATAAAT] 1543 (89.64)
45 - [TTTAAT] 1343 (89.18)
45 - [ATGAAT] 1192 (86.83)
45 - [ATTAAA] 838 (89.18)
45 - [ATAAAT] 776 (89.64)
45 - [ATTATT] 746 (89.19)
45 - [ATTATT] 673 (89.19)
45 - .ATTAAT. 531 (100.00)
45 - [ATGAAT] 515 (86.83)
45 - [AATAAT] 496 (89.19)
45 - [TTTAAT] 185 (89.18)
45 - [ATCAAT] 175 (85.32)
45 - [ATTTAT] 63 (89.64)
46 + [ATAAAT] 57 (89.64)
46 + [TTTAAT] 130 (89.18)
46 + [AATAAT] 199 (89.19)
46 + [ATTGAT] 264 (85.32)
46 + [ATTTAT] 268 (89.64)
46 + [ATCAAT] 292 (85.32)
46 + [ATTTAT] 414 (89.64)
46 + [ATTCAT] 454 (86.83)
46 - [ATGAAT] 454 (86.83)
46 - [ATAAAT] 414 (89.64)
46 - [ATTGAT] 292 (85.32)
46 - [ATAAAT] 268 (89.64)
46 - [ATCAAT] 264 (85.32)
46 - [ATTATT] 199 (89.19)
46 - [ATTAAA] 130 (89.18)
46 - [ATTTAT] 57 (89.64)
47 + [TTTAAT] 42 (89.18)
47 + [ATGAAT] 46 (86.83)
47 + [ATTAAA] 55 (89.18)
47 + .ATTAAT. 71 (100.00)
47 + [ATTATT] 166 (89.19)
47 + [AATAAT] 177 (89.19)
47 + [ATTGAT] 270 (85.32)
47 + [TTTAAT] 374 (89.18)
47 + [ATAAAT] 386 (89.64)
47 + [ATTAAA] 421 (89.18)
47 + [ATGAAT] 515 (86.83)
47 + [ATTCAT] 578 (86.83)
47 + [ATTCAT] 708 (86.83)
47 + [ATAAAT] 727 (89.64)
47 - [ATTTAT] 727 (89.64)
47 - [ATGAAT] 708 (86.83)
47 - [ATGAAT] 578 (86.83)
47 - [ATTCAT] 515 (86.83)
47 - [TTTAAT] 421 (89.18)
47 - [ATTTAT] 386 (89.64)
47 - [ATTAAA] 374 (89.18)
47 - [ATCAAT] 270 (85.32)
47 - [ATTATT] 177 (89.19)
47 - [AATAAT] 166 (89.19)
47 - .ATTAAT. 71 (100.00)
47 - [TTTAAT] 55 (89.18)
47 - [ATTCAT] 46 (86.83)
47 - [ATTAAA] 42 (89.18)
48 + [TTTAAT] 159 (89.18)
48 + [ATTTAT] 490 (89.64)
48 + [ATTCAT] 630 (86.83)
48 + [ATAAAT] 667 (89.64)
48 + .ATTAAT. 848 (100.00)
48 + [ATTGAT] 857 (85.32)
48 + [AATAAT] 907 (89.19)
48 + [AATAAT] 915 (89.19)
48 + [ATCAAT] 946 (85.32)
48 + [AATAAT] 949 (89.19)
48 + [TTTAAT] 987 (89.18)
48 + [ATCAAT] 1008 (85.32)
48 + [ATAAAT] 1260 (89.64)
48 + [ATTATT] 1317 (89.19)
48 + [ATTATT] 1320 (89.19)
48 + [AATAAT] 1462 (89.19)
48 + [ATGAAT] 1668 (86.83)
48 - [ATTCAT] 1668 (86.83)
48 - [ATTATT] 1462 (89.19)
48 - [AATAAT] 1320 (89.19)
48 - [AATAAT] 1317 (89.19)
48 - [ATTTAT] 1260 (89.64)
48 - [ATTGAT] 1008 (85.32)
48 - [ATTAAA] 987 (89.18)
48 - [ATTATT] 949 (89.19)
48 - [ATTGAT] 946 (85.32)
48 - [ATTATT] 915 (89.19)
48 - [ATTATT] 907 (89.19)
48 - [ATCAAT] 857 (85.32)
48 - .ATTAAT. 848 (100.00)
48 - [ATTTAT] 667 (89.64)
48 - [ATGAAT] 630 (86.83)
48 - [ATAAAT] 490 (89.64)
48 - [ATTAAA] 159 (89.18)
49 + .ATTAAT. 5 (100.00)
49 + [AATAAT] 8 (89.19)
49 + [ATTATT] 59 (89.19)
49 + [TTTAAT] 171 (89.18)
49 + .ATTAAT. 222 (100.00)
49 + [ATGAAT] 248 (86.83)
49 + [ATTGAT] 252 (85.32)
49 + .ATTAAT. 312 (100.00)
49 + [ATAAAT] 482 (89.64)
49 + [ATTAAA] 608 (89.18)
49 + [ATGAAT] 678 (86.83)
49 + [ATAAAT] 959 (89.64)
49 + [ATGAAT] 969 (86.83)
49 + [ATTAAA] 979 (89.18)
49 - [TTTAAT] 979 (89.18)
49 - [ATTCAT] 969 (86.83)
49 - [ATTTAT] 959 (89.64)
49 - [ATTCAT] 678 (86.83)
49 - [TTTAAT] 608 (89.18)
49 - [ATTTAT] 482 (89.64)
49 - .ATTAAT. 312 (100.00)
49 - [ATCAAT] 252 (85.32)
49 - [ATTCAT] 248 (86.83)
49 - .ATTAAT. 222 (100.00)
49 - [ATTAAA] 171 (89.18)
49 - [AATAAT] 59 (89.19)
49 - [ATTATT] 8 (89.19)
49 - .ATTAAT. 5 (100.00)
50 + [ATAAAT] 60 (89.64)
50 + [ATTGAT] 147 (85.32)
50 + [AATAAT] 307 (89.19)
50 + [TTTAAT] 465 (89.18)
50 + [TTTAAT] 481 (89.18)
50 + [ATTGAT] 551 (85.32)
50 + [ATTATT] 577 (89.19)
50 + [AATAAT] 619 (89.19)
50 + [ATCAAT] 633 (85.32)
50 + [AATAAT] 636 (89.19)
50 + [ATCAAT] 737 (85.32)
50 - [ATTGAT] 737 (85.32)
50 - [ATTATT] 636 (89.19)
50 - [ATTGAT] 633 (85.32)
50 - [ATTATT] 619 (89.19)
50 - [AATAAT] 577 (89.19)
50 - [ATCAAT] 551 (85.32)
50 - [ATTAAA] 481 (89.18)
50 - [ATTAAA] 465 (89.18)
50 - [ATTATT] 307 (89.19)
50 - [ATCAAT] 147 (85.32)
50 - [ATTTAT] 60 (89.64)
51 + [TTTAAT] 15 (89.18)
51 + [ATAAAT] 196 (89.64)
51 + [ATGAAT] 413 (86.83)
51 - [ATTCAT] 413 (86.83)
51 - [ATTTAT] 196 (89.64)
51 - [ATTAAA] 15 (89.18)
52 + [TTTAAT] 52 (89.18)
52 + [AATAAT] 55 (89.19)
52 + [AATAAT] 82 (89.19)
52 + [ATTAAA] 150 (89.18)
52 + [ATTAAA] 198 (89.18)
52 + [ATTATT] 304 (89.19)
52 + [ATTATT] 307 (89.19)
52 + [ATTATT] 310 (89.19)
52 + [ATTATT] 313 (89.19)
52 + [ATTATT] 316 (89.19)
52 + .ATTAAT. 380 (100.00)
52 + [ATTCAT] 448 (86.83)
52 - [ATGAAT] 448 (86.83)
52 - .ATTAAT. 380 (100.00)
52 - [AATAAT] 316 (89.19)
52 - [AATAAT] 313 (89.19)
52 - [AATAAT] 310 (89.19)
52 - [AATAAT] 307 (89.19)
52 - [AATAAT] 304 (89.19)
52 - [TTTAAT] 198 (89.18)
52 - [TTTAAT] 150 (89.18)
52 - [ATTATT] 82 (89.19)
52 - [ATTATT] 55 (89.19)
52 - [ATTAAA] 52 (89.18)
53 + [ATTGAT] 175 (85.32)
53 + [ATTAAA] 194 (89.18)
53 + .ATTAAT. 594 (100.00)
53 + [TTTAAT] 607 (89.18)
53 - [ATTAAA] 607 (89.18)
53 - .ATTAAT. 594 (100.00)
53 - [TTTAAT] 194 (89.18)
53 - [ATCAAT] 175 (85.32)
54 + .ATTAAT. 103 (100.00)
54 + [ATGAAT] 107 (86.83)
54 + [ATAAAT] 156 (89.64)
54 + [ATTTAT] 177 (89.64)
54 + [ATTGAT] 287 (85.32)
54 + [ATTATT] 325 (89.19)
54 + [ATTTAT] 328 (89.64)
54 + [AATAAT] 384 (89.19)
54 + [ATTTAT] 388 (89.64)
54 + [ATAAAT] 558 (89.64)
54 + [ATTTAT] 730 (89.64)
54 + [ATTATT] 769 (89.19)
54 + [AATAAT] 858 (89.19)
54 + [AATAAT] 874 (89.19)
54 - [ATTATT] 874 (89.19)
54 - [ATTATT] 858 (89.19)
54 - [AATAAT] 769 (89.19)
54 - [ATAAAT] 730 (89.64)
54 - [ATTTAT] 558 (89.64)
54 - [ATAAAT] 388 (89.64)
54 - [ATTATT] 384 (89.19)
54 - [ATAAAT] 328 (89.64)
54 - [AATAAT] 325 (89.19)
54 - [ATCAAT] 287 (85.32)
54 - [ATAAAT] 177 (89.64)
54 - [ATTTAT] 156 (89.64)
54 - [ATTCAT] 107 (86.83)
54 - .ATTAAT. 103 (100.00)
55 + [ATTAAA] 290 (89.18)
55 + [TTTAAT] 314 (89.18)
55 + [ATTATT] 359 (89.19)
55 + [ATGAAT] 365 (86.83)
55 + [ATCAAT] 403 (85.32)
55 + [ATTAAA] 482 (89.18)
55 + .ATTAAT. 523 (100.00)
55 + [ATTTAT] 535 (89.64)
55 + [ATTATT] 724 (89.19)
55 + [TTTAAT] 814 (89.18)
55 + [AATAAT] 866 (89.19)
55 + [TTTAAT] 871 (89.18)
55 + [AATAAT] 1002 (89.19)
55 + [ATTAAA] 1128 (89.18)
55 + [ATTATT] 1210 (89.19)
55 + [ATTATT] 1251 (89.19)
55 + [ATTTAT] 1263 (89.64)
55 + [TTTAAT] 1356 (89.18)
55 + [ATTCAT] 1479 (86.83)
55 + [ATTATT] 1660 (89.19)
55 - [AATAAT] 1660 (89.19)
55 - [ATGAAT] 1479 (86.83)
55 - [ATTAAA] 1356 (89.18)
55 - [ATAAAT] 1263 (89.64)
55 - [AATAAT] 1251 (89.19)
55 - [AATAAT] 1210 (89.19)
55 - [TTTAAT] 1128 (89.18)
55 - [ATTATT] 1002 (89.19)
55 - [ATTAAA] 871 (89.18)
55 - [ATTATT] 866 (89.19)
55 - [ATTAAA] 814 (89.18)
55 - [AATAAT] 724 (89.19)
55 - [ATAAAT] 535 (89.64)
55 - .ATTAAT. 523 (100.00)
55 - [TTTAAT] 482 (89.18)
55 - [ATTGAT] 403 (85.32)
55 - [ATTCAT] 365 (86.83)
55 - [AATAAT] 359 (89.19)
55 - [ATTAAA] 314 (89.18)
55 - [TTTAAT] 290 (89.18)
56 + [AATAAT] 29 (89.19)
56 + [TTTAAT] 234 (89.18)
56 + [ATAAAT] 261 (89.64)
56 + [ATGAAT] 265 (86.83)
56 + [ATTTAT] 434 (89.64)
56 + [ATGAAT] 481 (86.83)
56 + [ATTAAA] 565 (89.18)
56 + [ATTAAA] 628 (89.18)
56 + [ATTATT] 671 (89.19)
56 + [AATAAT] 729 (89.19)
56 + [ATAAAT] 896 (89.64)
56 + .ATTAAT. 939 (100.00)
56 + [TTTAAT] 953 (89.18)
56 + [ATTGAT] 978 (85.32)
56 + [AATAAT] 1080 (89.19)
56 + [ATTCAT] 1229 (86.83)
56 + [AATAAT] 1271 (89.19)
56 + .ATTAAT. 1282 (100.00)
56 + [ATTATT] 1381 (89.19)
56 + [ATTCAT] 1582 (86.83)
56 - [ATGAAT] 1582 (86.83)
56 - [AATAAT] 1381 (89.19)
56 - .ATTAAT. 1282 (100.00)
56 - [ATTATT] 1271 (89.19)
56 - [ATGAAT] 1229 (86.83)
56 - [ATTATT] 1080 (89.19)
56 - [ATCAAT] 978 (85.32)
56 - [ATTAAA] 953 (89.18)
56 - .ATTAAT. 939 (100.00)
56 - [ATTTAT] 896 (89.64)
56 - [ATTATT] 729 (89.19)
56 - [AATAAT] 671 (89.19)
56 - [TTTAAT] 628 (89.18)
56 - [TTTAAT] 565 (89.18)
56 - [ATTCAT] 481 (86.83)
56 - [ATAAAT] 434 (89.64)
56 - [ATTCAT] 265 (86.83)
56 - [ATTTAT] 261 (89.64)
56 - [ATTAAA] 234 (89.18)
56 - [ATTATT] 29 (89.19)
57 + [ATTAAA] 82 (89.18)
57 + [AATAAT] 162 (89.19)
57 + [ATCAAT] 794 (85.32)
57 + [AATAAT] 906 (89.19)
57 + [ATCAAT] 956 (85.32)
57 + [ATTATT] 1056 (89.19)
57 - [AATAAT] 1056 (89.19)
57 - [ATTGAT] 956 (85.32)
57 - [ATTATT] 906 (89.19)
57 - [ATTGAT] 794 (85.32)
57 - [ATTATT] 162 (89.19)
57 - [TTTAAT] 82 (89.18)
58 + [ATTCAT] 165 (86.83)
58 - [ATGAAT] 165 (86.83)
59 + [TTTAAT] 258 (89.18)
59 + [ATAAAT] 341 (89.64)
59 + [AATAAT] 397 (89.19)
59 + [AATAAT] 400 (89.19)
59 + [ATCAAT] 497 (85.32)
59 + [ATTAAA] 562 (89.18)
59 + [ATTAAA] 585 (89.18)
59 + [ATTAAA] 605 (89.18)
59 + [ATTAAA] 610 (89.18)
59 + [AATAAT] 619 (89.19)
59 + [ATTTAT] 623 (89.64)
59 + [ATAAAT] 848 (89.64)
59 + .ATTAAT. 858 (100.00)
59 + [ATTAAA] 872 (89.18)
59 + [ATGAAT] 1145 (86.83)
59 + [ATGAAT] 1149 (86.83)
59 + [ATTTAT] 1185 (89.64)
59 + [ATCAAT] 1229 (85.32)
59 + [AATAAT] 1379 (89.19)
59 + [ATTATT] 1483 (89.19)
59 + [ATAAAT] 1543 (89.64)
59 + [ATTATT] 1770 (89.19)
59 + [ATCAAT] 1840 (85.32)
59 - [ATTGAT] 1840 (85.32)
59 - [AATAAT] 1770 (89.19)
59 - [ATTTAT] 1543 (89.64)
59 - [AATAAT] 1483 (89.19)
59 - [ATTATT] 1379 (89.19)
59 - [ATTGAT] 1229 (85.32)
59 - [ATAAAT] 1185 (89.64)
59 - [ATTCAT] 1149 (86.83)
59 - [ATTCAT] 1145 (86.83)
59 - [TTTAAT] 872 (89.18)
59 - .ATTAAT. 858 (100.00)
59 - [ATTTAT] 848 (89.64)
59 - [ATAAAT] 623 (89.64)
59 - [ATTATT] 619 (89.19)
59 - [TTTAAT] 610 (89.18)
59 - [TTTAAT] 605 (89.18)
59 - [TTTAAT] 585 (89.18)
59 - [TTTAAT] 562 (89.18)
59 - [ATTGAT] 497 (85.32)
59 - [ATTATT] 400 (89.19)
59 - [ATTATT] 397 (89.19)
59 - [ATTTAT] 341 (89.64)
59 - [ATTAAA] 258 (89.18)
60 + [ATGAAT] 312 (86.83)
60 + [ATTTAT] 339 (89.64)
60 + [ATTTAT] 943 (89.64)
60 + [ATTTAT] 1544 (89.64)
60 + [ATTTAT] 1548 (89.64)
60 + [ATTTAT] 1852 (89.64)
60 + [ATTTAT] 1967 (89.64)
60 + [TTTAAT] 1974 (89.18)
60 - [ATTAAA] 1974 (89.18)
60 - [ATAAAT] 1967 (89.64)
60 - [ATAAAT] 1852 (89.64)
60 - [ATAAAT] 1548 (89.64)
60 - [ATAAAT] 1544 (89.64)
60 - [ATAAAT] 943 (89.64)
60 - [ATAAAT] 339 (89.64)
60 - [ATTCAT] 312 (86.83)
61 + [ATAAAT] 388 (89.64)
61 + [ATTTAT] 392 (89.64)
61 + [ATTCAT] 408 (86.83)
61 + [ATAAAT] 412 (89.64)
61 + [AATAAT] 607 (89.19)
61 + [ATTTAT] 611 (89.64)
61 + [ATTTAT] 629 (89.64)
61 + [ATTAAA] 711 (89.18)
61 + .ATTAAT. 940 (100.00)
61 + [ATTGAT] 1043 (85.32)
61 + [ATAAAT] 1092 (89.64)
61 + [ATCAAT] 1147 (85.32)
61 + [ATTGAT] 1246 (85.32)
61 + [ATTGAT] 1345 (85.32)
61 - [ATCAAT] 1345 (85.32)
61 - [ATCAAT] 1246 (85.32)
61 - [ATTGAT] 1147 (85.32)
61 - [ATTTAT] 1092 (89.64)
61 - [ATCAAT] 1043 (85.32)
61 - .ATTAAT. 940 (100.00)
61 - [TTTAAT] 711 (89.18)
61 - [ATAAAT] 629 (89.64)
61 - [ATAAAT] 611 (89.64)
61 - [ATTATT] 607 (89.19)
61 - [ATTTAT] 412 (89.64)
61 - [ATGAAT] 408 (86.83)
61 - [ATAAAT] 392 (89.64)
61 - [ATTTAT] 388 (89.64)
62 + [ATCAAT] 140 (85.32)
62 + [TTTAAT] 195 (89.18)
62 + [ATTCAT] 361 (86.83)
62 + [ATTATT] 447 (89.19)
62 + [ATGAAT] 540 (86.83)
62 + [ATTATT] 578 (89.19)
62 - [AATAAT] 578 (89.19)
62 - [ATTCAT] 540 (86.83)
62 - [AATAAT] 447 (89.19)
62 - [ATGAAT] 361 (86.83)
62 - [ATTAAA] 195 (89.18)
62 - [ATTGAT] 140 (85.32)
63 + [TTTAAT] 82 (89.18)
63 + [ATTTAT] 137 (89.64)
63 + [TTTAAT] 260 (89.18)
63 + [ATTAAA] 479 (89.18)
63 + [ATAAAT] 593 (89.64)
63 + [ATTCAT] 769 (86.83)
63 + [AATAAT] 1046 (89.19)
63 + [ATTCAT] 1322 (86.83)
63 + [TTTAAT] 1380 (89.18)
63 + [ATAAAT] 1399 (89.64)
63 + .ATTAAT. 1650 (100.00)
63 + .ATTAAT. 1702 (100.00)
63 + [ATCAAT] 1782 (85.32)
63 + [AATAAT] 1801 (89.19)
63 + [ATTATT] 1805 (89.19)
63 + [ATTATT] 1808 (89.19)
63 + [ATAAAT] 1881 (89.64)
63 + [AATAAT] 1896 (89.19)
63 + [TTTAAT] 1974 (89.18)
63 + [ATTAAA] 1978 (89.18)
63 - [TTTAAT] 1978 (89.18)
63 - [ATTAAA] 1974 (89.18)
63 - [ATTATT] 1896 (89.19)
63 - [ATTTAT] 1881 (89.64)
63 - [AATAAT] 1808 (89.19)
63 - [AATAAT] 1805 (89.19)
63 - [ATTATT] 1801 (89.19)
63 - [ATTGAT] 1782 (85.32)
63 - .ATTAAT. 1702 (100.00)
63 - .ATTAAT. 1650 (100.00)
63 - [ATTTAT] 1399 (89.64)
63 - [ATTAAA] 1380 (89.18)
63 - [ATGAAT] 1322 (86.83)
63 - [ATTATT] 1046 (89.19)
63 - [ATGAAT] 769 (86.83)
63 - [ATTTAT] 593 (89.64)
63 - [TTTAAT] 479 (89.18)
63 - [ATTAAA] 260 (89.18)
63 - [ATAAAT] 137 (89.64)
63 - [ATTAAA] 82 (89.18)
64 + [ATTAAA] 180 (89.18)
64 + [ATAAAT] 356 (89.64)
64 + [ATGAAT] 360 (86.83)
64 + [AATAAT] 454 (89.19)
64 + [ATTATT] 458 (89.19)
64 + [ATAAAT] 504 (89.64)
64 + [TTTAAT] 824 (89.18)
64 + [ATTCAT] 885 (86.83)
64 + [ATTATT] 927 (89.19)
64 + [ATTTAT] 930 (89.64)
64 + [TTTAAT] 1021 (89.18)
64 + [ATTAAA] 1025 (89.18)
64 + [ATTCAT] 1161 (86.83)
64 + [ATAAAT] 1170 (89.64)
64 + [ATTATT] 1213 (89.19)
64 + [ATTATT] 1223 (89.19)
64 + [ATTATT] 1226 (89.19)
64 + [ATTAAA] 1358 (89.18)
64 + [ATAAAT] 1419 (89.64)
64 + [ATTTAT] 1492 (89.64)
64 + .ATTAAT. 1590 (100.00)
64 + [ATCAAT] 1909 (85.32)
64 + [TTTAAT] 1942 (89.18)
64 + [TTTAAT] 1951 (89.18)
64 + [ATTCAT] 1959 (86.83)
64 - [ATGAAT] 1959 (86.83)
64 - [ATTAAA] 1951 (89.18)
64 - [ATTAAA] 1942 (89.18)
64 - [ATTGAT] 1909 (85.32)
64 - .ATTAAT. 1590 (100.00)
64 - [ATAAAT] 1492 (89.64)
64 - [ATTTAT] 1419 (89.64)
64 - [TTTAAT] 1358 (89.18)
64 - [AATAAT] 1226 (89.19)
64 - [AATAAT] 1223 (89.19)
64 - [AATAAT] 1213 (89.19)
64 - [ATTTAT] 1170 (89.64)
64 - [ATGAAT] 1161 (86.83)
64 - [TTTAAT] 1025 (89.18)
64 - [ATTAAA] 1021 (89.18)
64 - [ATAAAT] 930 (89.64)
64 - [AATAAT] 927 (89.19)
64 - [ATGAAT] 885 (86.83)
64 - [ATTAAA] 824 (89.18)
64 - [ATTTAT] 504 (89.64)
64 - [AATAAT] 458 (89.19)
64 - [ATTATT] 454 (89.19)
64 - [ATTCAT] 360 (86.83)
64 - [ATTTAT] 356 (89.64)
64 - [TTTAAT] 180 (89.18)
65 + [ATAAAT] 15 (89.64)
65 + [AATAAT] 324 (89.19)
65 + [ATTATT] 442 (89.19)
65 + .ATTAAT. 627 (100.00)
65 + [ATGAAT] 663 (86.83)
65 + [ATTATT] 669 (89.19)
65 + [ATAAAT] 756 (89.64)
65 + [ATCAAT] 776 (85.32)
65 + [ATTGAT] 927 (85.32)
65 + [ATTTAT] 970 (89.64)
65 + [ATTCAT] 991 (86.83)
65 + [ATTCAT] 1263 (86.83)
65 + [ATTTAT] 1635 (89.64)
65 + [AATAAT] 1647 (89.19)
65 + [AATAAT] 1650 (89.19)
65 + [ATTTAT] 1930 (89.64)
65 - [ATAAAT] 1930 (89.64)
65 - [ATTATT] 1650 (89.19)
65 - [ATTATT] 1647 (89.19)
65 - [ATAAAT] 1635 (89.64)
65 - [ATGAAT] 1263 (86.83)
65 - [ATGAAT] 991 (86.83)
65 - [ATAAAT] 970 (89.64)
65 - [ATCAAT] 927 (85.32)
65 - [ATTGAT] 776 (85.32)
65 - [ATTTAT] 756 (89.64)
65 - [AATAAT] 669 (89.19)
65 - [ATTCAT] 663 (86.83)
65 - .ATTAAT. 627 (100.00)
65 - [AATAAT] 442 (89.19)
65 - [ATTATT] 324 (89.19)
65 - [ATTTAT] 15 (89.64)
66 + [AATAAT] 18 (89.19)
66 + [ATTTAT] 22 (89.64)
66 + [ATTTAT] 159 (89.64)
66 + [AATAAT] 268 (89.19)
66 + [ATAAAT] 405 (89.64)
66 + [ATTTAT] 425 (89.64)
66 + [AATAAT] 714 (89.19)
66 + [ATTATT] 925 (89.19)
66 + [ATTTAT] 928 (89.64)
66 + [ATTTAT] 935 (89.64)
66 + [ATTAAA] 1165 (89.18)
66 - [TTTAAT] 1165 (89.18)
66 - [ATAAAT] 935 (89.64)
66 - [ATAAAT] 928 (89.64)
66 - [AATAAT] 925 (89.19)
66 - [ATTATT] 714 (89.19)
66 - [ATAAAT] 425 (89.64)
66 - [ATTTAT] 405 (89.64)
66 - [ATTATT] 268 (89.19)
66 - [ATAAAT] 159 (89.64)
66 - [ATAAAT] 22 (89.64)
66 - [ATTATT] 18 (89.19)
67 + [ATTATT] 32 (89.19)
67 + [ATTTAT] 62 (89.64)
67 + [ATTGAT] 66 (85.32)
67 + [ATAAAT] 72 (89.64)
67 + [TTTAAT] 103 (89.18)
67 + [ATGAAT] 107 (86.83)
67 + [ATTTAT] 394 (89.64)
67 + .ATTAAT. 426 (100.00)
67 + .ATTAAT. 480 (100.00)
67 + .ATTAAT. 510 (100.00)
67 + .ATTAAT. 516 (100.00)
67 + [ATTCAT] 530 (86.83)
67 + [ATTATT] 553 (89.19)
67 + [TTTAAT] 573 (89.18)
67 - [ATTAAA] 573 (89.18)
67 - [AATAAT] 553 (89.19)
67 - [ATGAAT] 530 (86.83)
67 - .ATTAAT. 516 (100.00)
67 - .ATTAAT. 510 (100.00)
67 - .ATTAAT. 480 (100.00)
67 - .ATTAAT. 426 (100.00)
67 - [ATAAAT] 394 (89.64)
67 - [ATTCAT] 107 (86.83)
67 - [ATTAAA] 103 (89.18)
67 - [ATTTAT] 72 (89.64)
67 - [ATCAAT] 66 (85.32)
67 - [ATAAAT] 62 (89.64)
67 - [AATAAT] 32 (89.19)
68 + [ATTATT] 165 (89.19)
68 + [ATTGAT] 168 (85.32)
68 + [TTTAAT] 242 (89.18)
68 + [ATTATT] 314 (89.19)
68 + [ATCAAT] 474 (85.32)
68 + [ATTAAA] 525 (89.18)
68 + [ATTAAA] 702 (89.18)
68 + [ATTTAT] 862 (89.64)
68 + [TTTAAT] 988 (89.18)
68 + [ATTAAA] 1374 (89.18)
68 + [TTTAAT] 1881 (89.18)
68 + [ATTGAT] 1951 (85.32)
68 + [ATTAAA] 1974 (89.18)
68 - [TTTAAT] 1974 (89.18)
68 - [ATCAAT] 1951 (85.32)
68 - [ATTAAA] 1881 (89.18)
68 - [TTTAAT] 1374 (89.18)
68 - [ATTAAA] 988 (89.18)
68 - [ATAAAT] 862 (89.64)
68 - [TTTAAT] 702 (89.18)
68 - [TTTAAT] 525 (89.18)
68 - [ATTGAT] 474 (85.32)
68 - [AATAAT] 314 (89.19)
68 - [ATTAAA] 242 (89.18)
68 - [ATCAAT] 168 (85.32)
68 - [AATAAT] 165 (89.19)
69 + [ATTAAA] 111 (89.18)
69 + [AATAAT] 115 (89.19)
69 + [ATTCAT] 228 (86.83)
69 + [ATTTAT] 435 (89.64)
69 - [ATAAAT] 435 (89.64)
69 - [ATGAAT] 228 (86.83)
69 - [ATTATT] 115 (89.19)
69 - [TTTAAT] 111 (89.18)
Frequency Matrix | All Occs | | | Best Occs |
|---|
| | | A | C | G | T | | | A | C | G | T |
|---|
| 1 | | 1618 | 33 | 42 | 175 | | | | 114 | 0 | 0 | 0 |
| 2 | | 173 | 50 | 49 | 1596 | | | | 0 | 0 | 0 | 114 |
| 3 | | 180 | 74 | 101 | 1513 | | | | 0 | 0 | 0 | 114 |
| 4 | | 1513 | 101 | 74 | 180 | | | | 114 | 0 | 0 | 0 |
| 5 | | 1596 | 49 | 50 | 173 | | | | 114 | 0 | 0 | 0 |
| 6 | | 175 | 42 | 33 | 1618 | | | | 0 | 0 | 0 | 114 |
AAATGCATTT
AAATGCATTT
3 redundant motifs found:
GAATGCATTC - AAAGGCCTTT - AATGCATT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AAAAACATTT. 34 (90.57)
1 + .AAATACATTT. 195 (96.55)
1 - .AAATGTATTT. 195 (96.55)
1 - .AAATGTTTTT. 34 (90.57)
2 + .AAATCAATTT. 403 (90.59)
2 - .AAATTGATTT. 403 (90.59)
3 + .AAATGATTTT. 128 (91.35)
3 + [AAAACCATTT] 426 (87.29)
3 - [AAATGGTTTT] 426 (87.29)
3 - .AAAATCATTT. 128 (91.35)
4 + [AAATCGATTT] 122 (86.54)
4 + [AAAATCTTTT] 411 (85.37)
4 - [AAAAGATTTT] 411 (85.37)
4 - [AAATCGATTT] 122 (86.54)
6 + .AAAATCATTT. 1304 (91.35)
6 + [AAAAATATTT] 1462 (87.12)
6 + [AAATATTTTT] 1464 (87.12)
6 - [AAAAATATTT] 1464 (87.12)
6 - [AAATATTTTT] 1462 (87.12)
6 - .AAATGATTTT. 1304 (91.35)
7 + [AATTTTATTT] 113 (86.79)
7 - [AAATAAAATT] 113 (86.79)
8 + .AAATTGATTT. 32 (90.59)
8 + [AATTTAATTT] 466 (87.57)
8 - [AAATTAAATT] 466 (87.57)
8 - .AAATCAATTT. 32 (90.59)
10 + [AAATTTTTTT] 962 (87.89)
10 + [AAAAATATTT] 1063 (87.12)
10 + [AAATATTTTT] 1065 (87.12)
10 + .AAATATATTT. 1484 (93.10)
10 + .AAATCAATTT. 1920 (90.59)
10 - .AAATTGATTT. 1920 (90.59)
10 - .AAATATATTT. 1484 (93.10)
10 - [AAAAATATTT] 1065 (87.12)
10 - [AAATATTTTT] 1063 (87.12)
10 - [AAAAAAATTT] 962 (87.89)
11 + .AAATTCATTT. 917 (97.32)
11 + [AAACTAATTT] 947 (85.74)
11 + [AATTTTATTT] 1805 (86.79)
11 - [AAATAAAATT] 1805 (86.79)
11 - [AAATTAGTTT] 947 (85.74)
11 - .AAATGAATTT. 917 (97.32)
12 + [AAATGACTTT] 235 (86.69)
12 + .AAATAAATTT. 644 (93.87)
12 + [AAATGGAATT] 706 (86.19)
12 - [AATTCCATTT] 706 (86.19)
12 - .AAATTTATTT. 644 (93.87)
12 - [AAAGTCATTT] 235 (86.69)
13 + .AAATGCATTT. 93 (100.00)
13 + [AAATTTAATT] 127 (86.79)
13 + [AATTTAATTT] 128 (87.57)
13 + [AAATTAAATT] 205 (87.57)
13 + [AATTAAATTT] 206 (86.79)
13 + [AAATTTTTTT] 210 (87.89)
13 + [AAATTTTTTT] 332 (87.89)
13 - [AAAAAAATTT] 332 (87.89)
13 - [AAAAAAATTT] 210 (87.89)
13 - [AAATTTAATT] 206 (86.79)
13 - [AATTTAATTT] 205 (87.57)
13 - [AAATTAAATT] 128 (87.57)
13 - [AATTAAATTT] 127 (86.79)
13 - .AAATGCATTT. 93 (100.00)
14 + [AAAGGAATTT] 461 (86.69)
14 + [GAATACATTT] 492 (86.29)
14 + .AAATTAATTT. 815 (94.65)
14 + [AAAAAAATTT] 899 (87.89)
14 + [AACTGTATTT] 1003 (85.72)
14 + [AATTTAATTT] 1446 (87.57)
14 - [AAATTAAATT] 1446 (87.57)
14 - [AAATACAGTT] 1003 (85.72)
14 - [AAATTTTTTT] 899 (87.89)
14 - .AAATTAATTT. 815 (94.65)
14 - [AAATGTATTC] 492 (86.29)
14 - [AAATTCCTTT] 461 (86.69)
16 + [TAATGTATTT] 247 (87.57)
16 - [AAATACATTA] 247 (87.57)
17 + [AATTTAATTT] 261 (87.57)
17 + [AAATTTTTTT] 574 (87.89)
17 - [AAAAAAATTT] 574 (87.89)
17 - [AAATTAAATT] 261 (87.57)
18 + [GAATGTATTT] 6 (86.29)
18 + [ACATGAATTT] 34 (87.30)
18 + [AAATTCAGTT] 447 (86.50)
18 + [AAATTTTTTT] 954 (87.89)
18 - [AAAAAAATTT] 954 (87.89)
18 - [AACTGAATTT] 447 (86.50)
18 - [AAATTCATGT] 34 (87.30)
18 - [AAATACATTC] 6 (86.29)
19 + [AAATTAGTTT] 137 (85.74)
19 + .AAATGCAATT. 344 (92.92)
19 + [TAATGAATTT] 917 (88.35)
19 + .AAATTCAATT. 1014 (90.24)
19 + [AAACTCATTT] 1052 (88.42)
19 - [AAATGAGTTT] 1052 (88.42)
19 - .AATTGAATTT. 1014 (90.24)
19 - [AAATTCATTA] 917 (88.35)
19 - .AATTGCATTT. 344 (92.92)
19 - [AAACTAATTT] 137 (85.74)
20 + .AAATGAATTT. 152 (97.32)
20 - .AAATTCATTT. 152 (97.32)
21 + [CAATACATTT] 482 (86.62)
21 + [AAAATAATTT] 907 (88.67)
21 + [AAATAATTTT] 908 (87.89)
21 + [TAATACATTT] 1058 (87.57)
21 + [AAAAAAATTT] 1576 (87.89)
21 - [AAATTTTTTT] 1576 (87.89)
21 - [AAATGTATTA] 1058 (87.57)
21 - [AAAATTATTT] 908 (87.89)
21 - [AAATTATTTT] 907 (88.67)
21 - [AAATGTATTG] 482 (86.62)
22 + [AAATTTAATT] 571 (86.79)
22 + [AATTTAATTT] 572 (87.57)
22 - [AAATTAAATT] 572 (87.57)
22 - [AATTAAATTT] 571 (86.79)
23 + [AAAAAAATTT] 393 (87.89)
23 - [AAATTTTTTT] 393 (87.89)
25 + .TAATGCATTT. 146 (91.02)
25 + .TAATGCATTT. 170 (91.02)
25 + [AAATTCGTTT] 321 (88.42)
25 - [AAACGAATTT] 321 (88.42)
25 - .AAATGCATTA. 170 (91.02)
25 - .AAATGCATTA. 146 (91.02)
26 + [AAATGTATAT] 1 (88.53)
26 + [AAATAGATTT] 53 (89.82)
26 + [AAATGTATTG] 274 (86.62)
26 - [CAATACATTT] 274 (86.62)
26 - [AAATCTATTT] 53 (89.82)
26 - [ATATACATTT] 1 (88.53)
27 + [AAATTAATAT] 23 (86.63)
27 + .AAATTCATTT. 221 (97.32)
27 - .AAATGAATTT. 221 (97.32)
27 - [ATATTAATTT] 23 (86.63)
28 + [AAAACCATTT] 73 (87.29)
28 + .AAATGCATTG. 564 (90.07)
28 + [AATTATATTT] 696 (86.02)
28 + .AAATGCTTTT. 913 (94.02)
28 + .AAAAACATTT. 993 (90.57)
28 + .AAATATATTT. 1190 (93.10)
28 - .AAATATATTT. 1190 (93.10)
28 - .AAATGTTTTT. 993 (90.57)
28 - .AAAAGCATTT. 913 (94.02)
28 - [AAATATAATT] 696 (86.02)
28 - .CAATGCATTT. 564 (90.07)
28 - [AAATGGTTTT] 73 (87.29)
29 + .AAATTCATTT. 106 (97.32)
29 - .AAATGAATTT. 106 (97.32)
30 + .AAATTCTTTT. 183 (91.35)
30 - .AAAAGAATTT. 183 (91.35)
31 + [AAATACATAT] 88 (88.53)
31 + [AAAAAAATTT] 493 (87.89)
31 + .AAATGCATTT. 672 (100.00)
31 - .AAATGCATTT. 672 (100.00)
31 - [AAATTTTTTT] 493 (87.89)
31 - [ATATGTATTT] 88 (88.53)
32 + .AAATGTTTTT. 41 (90.57)
32 + [AAATGCATTC] 225 (89.74)
32 + [AAATGGATAT] 410 (85.25)
32 - [ATATCCATTT] 410 (85.25)
32 - [GAATGCATTT] 225 (89.74)
32 - .AAAAACATTT. 41 (90.57)
33 + .AATTGAATTT. 235 (90.24)
33 + .AAATTTATTT. 605 (93.87)
33 + [AAATAATTTT] 813 (87.89)
33 + [AAATGAATCT] 880 (85.72)
33 - [AGATTCATTT] 880 (85.72)
33 - [AAAATTATTT] 813 (87.89)
33 - .AAATAAATTT. 605 (93.87)
33 - .AAATTCAATT. 235 (90.24)
34 + .AAATGAATTT. 854 (97.32)
34 + [AAATGTACTT] 956 (85.39)
34 + [AAATTCACTT] 1013 (86.16)
34 + [AAATTCATAT] 1952 (89.30)
34 - [ATATGAATTT] 1952 (89.30)
34 - [AAGTGAATTT] 1013 (86.16)
34 - [AAGTACATTT] 956 (85.39)
34 - .AAATTCATTT. 854 (97.32)
35 + [AAAAATATTT] 122 (87.12)
35 + .AAATGTTTTT. 337 (90.57)
35 + [TAATGTATTT] 458 (87.57)
35 + .AAATGAAATT. 925 (90.24)
35 + [AAAGGTATTT] 970 (85.92)
35 - [AAATACCTTT] 970 (85.92)
35 - .AATTTCATTT. 925 (90.24)
35 - [AAATACATTA] 458 (87.57)
35 - .AAAAACATTT. 337 (90.57)
35 - [AAATATTTTT] 122 (87.12)
36 + [AAAAATATTT] 28 (87.12)
36 + [AAATATTTTT] 30 (87.12)
36 + .AAATTTATTT. 94 (93.87)
36 + .AAATTGATTT. 343 (90.59)
36 + [AAATTAATAT] 881 (86.63)
36 + [AAATTTTTTT] 973 (87.89)
36 + [AAATATATAT] 1161 (85.08)
36 + [AATTGCTTTT] 1393 (86.94)
36 + [AATTGGATTT] 1450 (86.19)
36 - [AAATCCAATT] 1450 (86.19)
36 - [AAAAGCAATT] 1393 (86.94)
36 - [ATATATATTT] 1161 (85.08)
36 - [AAAAAAATTT] 973 (87.89)
36 - [ATATTAATTT] 881 (86.63)
36 - .AAATCAATTT. 343 (90.59)
36 - .AAATAAATTT. 94 (93.87)
36 - [AAAAATATTT] 30 (87.12)
36 - [AAATATTTTT] 28 (87.12)
37 + [AAATGTGTTT] 265 (87.65)
37 + .AATTGAATTT. 282 (90.24)
37 + [AAAGACATTT] 727 (85.92)
37 + [AAATGACTTT] 816 (86.69)
37 + .AAATGATTTT. 1055 (91.35)
37 + [AAAAGCTTTT] 1263 (88.04)
37 + [AAATTCATTC] 1517 (87.06)
37 + .AAATGCATTG. 1528 (90.07)
37 + [AAATGCATCT] 1655 (88.40)
37 - [AGATGCATTT] 1655 (88.40)
37 - .CAATGCATTT. 1528 (90.07)
37 - [GAATGAATTT] 1517 (87.06)
37 - [AAAAGCTTTT] 1263 (88.04)
37 - .AAAATCATTT. 1055 (91.35)
37 - [AAAGTCATTT] 816 (86.69)
37 - [AAATGTCTTT] 727 (85.92)
37 - .AAATTCAATT. 282 (90.24)
37 - [AAACACATTT] 265 (87.65)
38 + [ATATTCATTT] 58 (89.30)
38 - [AAATGAATAT] 58 (89.30)
39 + [AAATTATTTT] 22 (88.67)
39 + [TAATGTATTT] 311 (87.57)
39 + .AATTTCATTT. 401 (90.24)
39 + [AAATTTTTTT] 624 (87.89)
39 - [AAAAAAATTT] 624 (87.89)
39 - .AAATGAAATT. 401 (90.24)
39 - [AAATACATTA] 311 (87.57)
39 - [AAAATAATTT] 22 (88.67)
40 + [ATATTAATTT] 305 (86.63)
40 + [AAATTTTTTT] 467 (87.89)
40 - [AAAAAAATTT] 467 (87.89)
40 - [AAATTAATAT] 305 (86.63)
41 + [AAAAATATTT] 234 (87.12)
41 + [AAATTTTTTT] 251 (87.89)
41 - [AAAAAAATTT] 251 (87.89)
41 - [AAATATTTTT] 234 (87.12)
45 + [AAATCTATTT] 199 (89.82)
45 + .AAATGTTTTT. 312 (90.57)
45 + .AAATTTATTT. 774 (93.87)
45 - .AAATAAATTT. 774 (93.87)
45 - .AAAAACATTT. 312 (90.57)
45 - [AAATAGATTT] 199 (89.82)
46 + [AAATACATGT] 277 (86.53)
46 - [ACATGTATTT] 277 (86.53)
47 + [AAAAAAATTT] 584 (87.89)
47 - [AAATTTTTTT] 584 (87.89)
48 + .AAATGTATTT. 102 (96.55)
48 + .AAAAACATTT. 198 (90.57)
48 + [AAACGAATTT] 315 (88.42)
48 + .AAATACATTT. 342 (96.55)
48 - .AAATGTATTT. 342 (96.55)
48 - [AAATTCGTTT] 315 (88.42)
48 - .AAATGTTTTT. 198 (90.57)
48 - .AAATACATTT. 102 (96.55)
49 + [AAATTAATAT] 220 (86.63)
49 + [AAATAGATTT] 715 (89.82)
49 - [AAATCTATTT] 715 (89.82)
49 - [ATATTAATTT] 220 (86.63)
50 + [AAATAAATAT] 58 (85.85)
50 - [ATATTTATTT] 58 (85.85)
54 + .AAATCCATTT. 60 (93.27)
54 + .AAATTTATTT. 175 (93.87)
54 + [AAAATAATTT] 382 (88.67)
54 + [ATATATATTT] 964 (85.08)
54 - [AAATATATAT] 964 (85.08)
54 - [AAATTATTTT] 382 (88.67)
54 - .AAATAAATTT. 175 (93.87)
54 - .AAATGGATTT. 60 (93.27)
55 + [AAATATAATT] 294 (86.02)
55 + [AAATTTTTTT] 804 (87.89)
55 + [AATTTAATTT] 869 (87.57)
55 + [AAATGGAATT] 1244 (86.19)
55 + .AATTTCATTT. 1440 (90.24)
55 - .AAATGAAATT. 1440 (90.24)
55 - [AATTCCATTT] 1244 (86.19)
55 - [AAATTAAATT] 869 (87.57)
55 - [AAAAAAATTT] 804 (87.89)
55 - [AATTATATTT] 294 (86.02)
56 + [AAACTCATTT] 205 (88.42)
56 + .AAATGCATTT. 227 (100.00)
56 + .AAATGAATTT. 263 (97.32)
56 + [AAACTAATTT] 655 (85.74)
56 + [AAATGTATTG] 1128 (86.62)
56 + [AAATTCATTC] 1227 (87.06)
56 + [AAAATAATTT] 1269 (88.67)
56 + [AAATAATTTT] 1270 (87.89)
56 + .AATTTCATTT. 1350 (90.24)
56 - .AAATGAAATT. 1350 (90.24)
56 - [AAAATTATTT] 1270 (87.89)
56 - [AAATTATTTT] 1269 (88.67)
56 - [GAATGAATTT] 1227 (87.06)
56 - [CAATACATTT] 1128 (86.62)
56 - [AAATTAGTTT] 655 (85.74)
56 - .AAATTCATTT. 263 (97.32)
56 - .AAATGCATTT. 227 (100.00)
56 - [AAATGAGTTT] 205 (88.42)
57 + [AAATTAAATT] 80 (87.57)
57 + [AAATAGATTT] 751 (89.82)
57 + .AAATTCTTTT. 1305 (91.35)
57 - .AAAAGAATTT. 1305 (91.35)
57 - [AAATCTATTT] 751 (89.82)
57 - [AATTTAATTT] 80 (87.57)
59 + [AAATTAAATT] 603 (87.57)
59 + [AAATATATAT] 850 (85.08)
59 + [ATATTAATTT] 856 (86.63)
59 + [AAATTCGTTT] 1545 (88.42)
59 - [AAACGAATTT] 1545 (88.42)
59 - [AAATTAATAT] 856 (86.63)
59 - [ATATATATTT] 850 (85.08)
59 - [AATTTAATTT] 603 (87.57)
61 + .AAATAAATTT. 386 (93.87)
61 + .AAATTGATTT. 1041 (90.59)
61 - .AAATCAATTT. 1041 (90.59)
61 - .AAATTTATTT. 386 (93.87)
63 + [AAAACCATTT] 131 (87.29)
63 + [ATATTAATTT] 1700 (86.63)
63 + [AATTCCATTT] 1884 (86.19)
63 + [AAAATCTTTT] 1967 (85.37)
63 - [AAAAGATTTT] 1967 (85.37)
63 - [AAATGGAATT] 1884 (86.19)
63 - [AAATTAATAT] 1700 (86.63)
63 - [AAATGGTTTT] 131 (87.29)
64 + [AAAGGCATTT] 16 (89.37)
64 + [AAATTCATCT] 883 (85.72)
64 + [AAAATTATTT] 924 (87.89)
64 + [ATAAGCATTT] 997 (86.00)
64 + [AAATAAATAT] 1168 (85.85)
64 + .AAATACATTT. 1282 (96.55)
64 - .AAATGTATTT. 1282 (96.55)
64 - [ATATTTATTT] 1168 (85.85)
64 - [AAATGCTTAT] 997 (86.00)
64 - [AAATAATTTT] 924 (87.89)
64 - [AGATGAATTT] 883 (85.72)
64 - [AAATGCCTTT] 16 (89.37)
65 + [AAATTCATTG] 1261 (87.39)
65 + .AAATGAAATT. 1454 (90.24)
65 - .AATTTCATTT. 1454 (90.24)
65 - [CAATGAATTT] 1261 (87.39)
66 + [ATATATATTT] 153 (85.08)
66 + [ATATTTATTT] 157 (85.85)
66 + [AACTACATTT] 1253 (85.72)
66 - [AAATGTAGTT] 1253 (85.72)
66 - [AAATAAATAT] 157 (85.85)
66 - [AAATATATAT] 153 (85.08)
67 + [AAATTAATTA] 478 (85.67)
67 + [AATTGCTTTT] 603 (86.94)
67 - [AAAAGCAATT] 603 (86.94)
67 - [TAATTAATTT] 478 (85.67)
68 + .AAATACATTT. 580 (96.55)
68 + [TAATACATTT] 918 (87.57)
68 + [AAATTTTTTT] 958 (87.89)
68 - [AAAAAAATTT] 958 (87.89)
68 - [AAATGTATTA] 918 (87.57)
68 - .AAATGTATTT. 580 (96.55)
69 + .AAATACATTT. 300 (96.55)
69 - .AAATGTATTT. 300 (96.55)
Frequency Matrix | All Occs | | | Best Occs |
|---|
| | | A | C | G | T | | | A | C | G | T |
|---|
| 1 | | 1454 | 110 | 101 | 141 | | | | 106 | 2 | 0 | 2 |
| 2 | | 1448 | 107 | 71 | 180 | | | | 110 | 0 | 0 | 0 |
| 3 | | 1418 | 85 | 78 | 225 | | | | 101 | 0 | 0 | 9 |
| 4 | | 278 | 130 | 83 | 1315 | | | | 12 | 0 | 0 | 98 |
| 5 | | 354 | 151 | 868 | 433 | | | | 22 | 6 | 50 | 32 |
| 6 | | 433 | 868 | 151 | 354 | | | | 32 | 50 | 6 | 22 |
| 7 | | 1315 | 83 | 130 | 278 | | | | 98 | 0 | 0 | 12 |
| 8 | | 225 | 78 | 85 | 1418 | | | | 9 | 0 | 0 | 101 |
| 9 | | 180 | 71 | 107 | 1448 | | | | 0 | 0 | 0 | 110 |
| 10 | | 141 | 101 | 110 | 1454 | | | | 2 | 0 | 2 | 106 |