Your Weeder Web Results
NEW: Starting a large job on file /tmp/motif_master/12016_WEEDER/mec3_top20o_u2_2_19.fa
Organism code: CE
Processing both strands
/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/12016_WEEDER/mec3_top20o_u2_2_19.fa CE large S
Searching for motifs of length 6 with 1 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12016_WEEDER/mec3_top20o_u2_2_19.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) ATTTTT 1.58
2) ATGCAT 1.00
3) CATCCG 0.61
4) TTCGAA 0.54
5) GAATTC 0.53
6) TCATGA 0.53
7) GTCTTC 0.52
8) TCTAGA 0.52
9) CATCTT 0.52
10) TGATCA 0.51
Elapsed time : 0 min. 7 sec.
Searching for motifs of length 8 with 2 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12016_WEEDER/mec3_top20o_u2_2_19.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) AATGCATT 1.11
2) ATCCGGAT 1.00
3) AGACGTCT 0.91
4) CATGCATG 0.91
5) GAGATCTC 0.86
6) GTCTAGAC 0.83
7) ATCTAGAT 0.82
8) ATGATCAT 0.82
9) AGAGCTCT 0.81
10) TCCTAGGA 0.81
Elapsed time : 2 min. 29 sec.
Searching for motifs of length 10 with 3 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12016_WEEDER/mec3_top20o_u2_2_19.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) ATGCATTTGT 0.74
2) TTCCTAGGAA 0.73
3) TAATGCATTA 0.72
4) ACATGCATGT 0.68
5) TCTGAGGATG 0.66
6) TATGCATTTG 0.66
7) GTTTCGAAAC 0.64
8) ATGATATCAT 0.64
9) GGATATATCC 0.63
10) TCATGCATGA 0.62
Elapsed time : -25 min. -10 sec.
Searching for motifs of length 12 with 4 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12016_WEEDER/mec3_top20o_u2_2_19.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) AAAGAGAAGAAG 2.17
2) AAAAGAGAAGAA 2.04
3) AAGGAGAAGAGA 2.04
4) GAAGAGAGAAGA 2.00
5) AGGGAGAAGAGA 1.98
6) AGAAGATGAAGA 1.97
7) AAGAGGAGAAGA 1.97
8) GAAGGGAGAAGA 1.95
9) AAGGGAGAAGAG 1.93
10) AAAGAGAAGAGA 1.92
Elapsed time : 17 min. 32 sec.
Your sequences:
Sequence 1 : >ID453508_cr01.sctg0.wum.271.1_upstream
Sequence 2 : >ID454102_cr01.sctg0.wum.845.1_upstream
Sequence 3 : >ID454104_cr01.sctg0.wum.847.1_upstream
Sequence 4 : >ID455785_cr01.sctg115.wum.12.1_upstrea
Sequence 5 : >ID455998_cr01.sctg11.wum.12.1_upstream
Sequence 6 : >ID456159_cr01.sctg11.wum.158.1_upstrea
Sequence 7 : >ID457735_cr01.sctg13.wum.195.1_upstrea
Sequence 8 : >ID458353_cr01.sctg14.wum.64.1_upstream
Sequence 9 : >ID458536_cr01.sctg14.wum.232.2_upstrea
Sequence 10 : >ID458538_cr01.sctg14.wum.234.1_upstrea
Sequence 11 : >ID462591_cr01.sctg1.wum.874.1_upstream
Sequence 12 : >ID466787_cr01.sctg2.wum.628.1_upstream
Sequence 13 : >ID468132_cr01.sctg34.wum.75.1_upstream
Sequence 14 : >ID470224_cr01.sctg412.wum.3.1_upstream
Sequence 15 : >ID471538_cr01.sctg4.wum.81.1_upstream_
Sequence 16 : >ID473355_cr01.sctg5.wum.40.1_upstream_
Sequence 17 : >ID475444_cr01.sctg6.wum.394.1_upstream
Sequence 18 : >ID476102_cr01.sctg74.wum.24.1_upstream
Sequence 19 : >ID479465_cr01.sctg9.wum.412.1_upstream
Sequence 20 : >ID479501_cr01.sctg60.wum.13.1_upstream
Sequence 21 : >ID480204_CBG00675_upstream_2kb
Sequence 22 : >ID482530_CBG03506_upstream_2kb
Sequence 23 : >ID486355_CBG08386_upstream_2kb
Sequence 24 : >ID486456_CBG08510_upstream_2kb
Sequence 25 : >ID487221_CBG09481_upstream_2kb
Sequence 26 : >ID488640_CBG11337_upstream_2kb
Sequence 27 : >ID489977_CBG12955_upstream_2kb
Sequence 28 : >ID491073_CBG14383_upstream_2kb
Sequence 29 : >ID491075_CBG14385_upstream_2kb
Sequence 30 : >ID492053_CBG15739_upstream_2kb
Sequence 31 : >ID492423_CBG16250_upstream_2kb
Sequence 32 : >ID492674_CBG16615_upstream_2kb
Sequence 33 : >ID492797_CBG16786_upstream_2kb
Sequence 34 : >ID493197_CBG17385_upstream_2kb
Sequence 35 : >ID493450_CBG17726_upstream_2kb
Sequence 36 : >ID493452_CBG17728_upstream_2kb
Sequence 37 : >ID494802_CBG19401_upstream_2kb
Sequence 38 : >ID495496_CBG20310_upstream_2kb
Sequence 39 : >ID497114_CBG22372_upstream_2kb
Sequence 40 : >ID1043663_Y48G8AL.8a_upstream_2kb
Sequence 41 : >ID1049160_C06A8.3_upstream_2kb
Sequence 42 : >ID1049331_F14E5.4_upstream_2kb
Sequence 43 : >ID1051493_C44B11.3_upstream_2kb
Sequence 44 : >ID1052601_F37C12.12_upstream_2kb
Sequence 45 : >ID1053864_ZC482.5_upstream_2kb
Sequence 46 : >ID1055823_F57H12.2_upstream_2kb
Sequence 47 : >ID1055825_F57H12.7_upstream_2kb
Sequence 48 : >ID1055999_F42A9.9_upstream_2kb
Sequence 49 : >ID1056523_F01D4.6a_upstream_2kb
Sequence 50 : >ID1057333_Y45F10D.12_upstream_2kb
Sequence 51 : >ID1060032_F20D6.5_upstream_2kb
Sequence 52 : >ID1060542_C50H2.3_upstream_2kb
Sequence 53 : >ID1061372_F15B9.1_upstream_2kb
Sequence 54 : >ID1063757_T07D1.3_upstream_2kb
Sequence 55 : >ID1064092_C52B9.9_upstream_2kb
Sequence 56 : >ID1064094_C52B9.6_upstream_2kb
Sequence 57 : >ID1064828_ZK154.3_upstream_2kb
Sequence 58 : >ID1065528_C03A3.3_upstream_2kb
Sequence 59 : >ID1066465_T01C8.7_upstream_2kb
**** MY ADVICE ****
*** Interesting motifs (highest-ranking) seem to be :
AATGCATT
AATGCATT
3 redundant motifs found:
TAATGCATTA - CATGCATG - ATGCAT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [AATTGATT] 538 (85.79)
1 + .AATGCATT. 1103 (100.00)
1 + [CATGCATT] 1267 (88.21)
1 + [AATGAATA] 1344 (85.02)
1 + [AATAAATT] 1348 (87.96)
1 - [AATTTATT] 1348 (87.96)
1 - [TATTCATT] 1344 (85.02)
1 - [AATGCATG] 1267 (88.21)
1 - .AATGCATT. 1103 (100.00)
1 - [AATCAATT] 538 (85.79)
2 + .AATGTATT. 114 (93.07)
2 + [AATAAATT] 521 (87.96)
2 + [TATTCATT] 552 (85.02)
2 + [AATGCTTT] 1202 (89.88)
2 + .AATGCATA. 1245 (90.14)
2 + [AATATATT] 1282 (86.14)
2 - [AATATATT] 1282 (86.14)
2 - .TATGCATT. 1245 (90.14)
2 - [AAAGCATT] 1202 (89.88)
2 - [AATGAATA] 552 (85.02)
2 - [AATTTATT] 521 (87.96)
2 - .AATACATT. 114 (93.07)
3 + .TATGCATT. 21 (90.14)
3 + .TATGCATT. 791 (90.14)
3 + [TATTCATT] 841 (85.02)
3 - [AATGAATA] 841 (85.02)
3 - .AATGCATA. 791 (90.14)
3 - .AATGCATA. 21 (90.14)
4 + [AATTCAAT] 878 (85.11)
4 + [ATTTCATT] 889 (85.11)
4 + [AATTCAAT] 1039 (85.11)
4 + [AATTCAAT] 1044 (85.11)
4 + [AATTGATT] 1233 (85.79)
4 - [AATCAATT] 1233 (85.79)
4 - [ATTGAATT] 1044 (85.11)
4 - [ATTGAATT] 1039 (85.11)
4 - [AATGAAAT] 889 (85.11)
4 - [ATTGAATT] 878 (85.11)
5 + [AATTGATT] 12 (85.79)
5 + [AATTAATT] 261 (89.77)
5 + [AATTCAAT] 471 (85.11)
5 + [AATGCTTT] 714 (89.88)
5 + [AATTCATA] 1013 (85.02)
5 + [TATGAATT] 1203 (85.02)
5 + [AATTCATA] 1244 (85.02)
5 - [TATGAATT] 1244 (85.02)
5 - [AATTCATA] 1203 (85.02)
5 - [TATGAATT] 1013 (85.02)
5 - [AAAGCATT] 714 (89.88)
5 - [ATTGAATT] 471 (85.11)
5 - [AATTAATT] 261 (89.77)
5 - [AATCAATT] 12 (85.79)
6 + .AATGCATA. 385 (90.14)
6 + .AATGCATT. 1919 (100.00)
6 - .AATGCATT. 1919 (100.00)
6 - .TATGCATT. 385 (90.14)
7 + [AATAAATT] 176 (87.96)
7 + [AATATATT] 589 (86.14)
7 + .AATGAATT. 756 (94.88)
7 + [AATAAATT] 865 (87.96)
7 + [TATTCATT] 954 (85.02)
7 + .AATGAATT. 1162 (94.88)
7 + [AATGAAAT] 1238 (85.11)
7 + .AATTCATT. 1321 (94.88)
7 - .AATGAATT. 1321 (94.88)
7 - [ATTTCATT] 1238 (85.11)
7 - .AATTCATT. 1162 (94.88)
7 - [AATGAATA] 954 (85.02)
7 - [AATTTATT] 865 (87.96)
7 - .AATTCATT. 756 (94.88)
7 - [AATATATT] 589 (86.14)
7 - [AATTTATT] 176 (87.96)
8 + [AATGAAAT] 255 (85.11)
8 + [TATGAATT] 500 (85.02)
8 + .AATGCATT. 1276 (100.00)
8 + [AATGCATC] 1401 (86.88)
8 - [GATGCATT] 1401 (86.88)
8 - .AATGCATT. 1276 (100.00)
8 - [AATTCATA] 500 (85.02)
8 - [ATTTCATT] 255 (85.11)
9 + [AATATATT] 42 (86.14)
9 + [AATGAAAT] 73 (85.11)
9 + [GATGCATT] 595 (86.88)
9 + [AATCAATT] 830 (85.79)
9 + .AATGCATT. 1096 (100.00)
9 - .AATGCATT. 1096 (100.00)
9 - [AATTGATT] 830 (85.79)
9 - [AATGCATC] 595 (86.88)
9 - [ATTTCATT] 73 (85.11)
9 - [AATATATT] 42 (86.14)
10 + [AATAAATT] 50 (87.96)
10 + [AATGAATA] 217 (85.02)
10 + [AATCAATT] 945 (85.79)
10 + [AATATATT] 998 (86.14)
10 + [AATTCATA] 1083 (85.02)
10 + [AATGCATG] 1139 (88.21)
10 - [CATGCATT] 1139 (88.21)
10 - [TATGAATT] 1083 (85.02)
10 - [AATATATT] 998 (86.14)
10 - [AATTGATT] 945 (85.79)
10 - [TATTCATT] 217 (85.02)
10 - [AATTTATT] 50 (87.96)
11 + [AATTGATT] 73 (85.79)
11 + [AATTTATT] 421 (87.96)
11 + .AATTCATT. 1377 (94.88)
11 - .AATGAATT. 1377 (94.88)
11 - [AATAAATT] 421 (87.96)
11 - [AATCAATT] 73 (85.79)
12 + [ATTTCATT] 88 (85.11)
12 + [AATTTATT] 428 (87.96)
12 + .AATGAATT. 458 (94.88)
12 + [AATGAATA] 894 (85.02)
12 - [TATTCATT] 894 (85.02)
12 - .AATTCATT. 458 (94.88)
12 - [AATAAATT] 428 (87.96)
12 - [AATGAAAT] 88 (85.11)
13 + .AATACATT. 197 (93.07)
13 + [AACGCATT] 636 (86.58)
13 - [AATGCGTT] 636 (86.58)
13 - .AATGTATT. 197 (93.07)
14 + [AATTGATT] 372 (85.79)
14 + .AATTCATT. 461 (94.88)
14 + [AATTAATT] 761 (89.77)
14 - [AATTAATT] 761 (89.77)
14 - .AATGAATT. 461 (94.88)
14 - [AATCAATT] 372 (85.79)
15 + [TATGAATT] 608 (85.02)
15 + .AATGCAAT. 1200 (90.22)
15 + [AATATATT] 1399 (86.14)
15 + [CATGCATT] 1464 (88.21)
15 + [ATTGAATT] 1651 (85.11)
15 + [AATGCATC] 1765 (86.88)
15 - [GATGCATT] 1765 (86.88)
15 - [AATTCAAT] 1651 (85.11)
15 - [AATGCATG] 1464 (88.21)
15 - [AATATATT] 1399 (86.14)
15 - .ATTGCATT. 1200 (90.22)
15 - [AATTCATA] 608 (85.02)
16 + [AATCAATT] 517 (85.79)
16 + .AATGAATT. 765 (94.88)
16 + [TATGAATT] 940 (85.02)
16 + [AATCAATT] 1022 (85.79)
16 + .ATTGCATT. 1744 (90.22)
16 - .AATGCAAT. 1744 (90.22)
16 - [AATTGATT] 1022 (85.79)
16 - [AATTCATA] 940 (85.02)
16 - .AATTCATT. 765 (94.88)
16 - [AATTGATT] 517 (85.79)
17 + [AATTTATT] 192 (87.96)
17 + [AATGCTTT] 388 (89.88)
17 + .AATACATT. 481 (93.07)
17 + [AATCAATT] 558 (85.79)
17 - [AATTGATT] 558 (85.79)
17 - .AATGTATT. 481 (93.07)
17 - [AAAGCATT] 388 (89.88)
17 - [AATAAATT] 192 (87.96)
18 + [AATAAATT] 45 (87.96)
18 + [AATTAATT] 1033 (89.77)
18 - [AATTAATT] 1033 (89.77)
18 - [AATTTATT] 45 (87.96)
19 + .AATGAATT. 600 (94.88)
19 + .AATGAATT. 883 (94.88)
19 + [AATTGATT] 1221 (85.79)
19 + [AATGAATA] 1328 (85.02)
19 - [TATTCATT] 1328 (85.02)
19 - [AATCAATT] 1221 (85.79)
19 - .AATTCATT. 883 (94.88)
19 - .AATTCATT. 600 (94.88)
20 + [ATTGAATT] 28 (85.11)
20 - [AATTCAAT] 28 (85.11)
21 + [AATTTATT] 1930 (87.96)
21 - [AATAAATT] 1930 (87.96)
22 + [ATTGAATT] 492 (85.11)
22 - [AATTCAAT] 492 (85.11)
23 + [AATCAATT] 419 (85.79)
23 + .AATACATT. 647 (93.07)
23 + [ATTTCATT] 841 (85.11)
23 + .AATGCATT. 1422 (100.00)
23 + [AATGCATC] 1547 (86.88)
23 - [GATGCATT] 1547 (86.88)
23 - .AATGCATT. 1422 (100.00)
23 - [AATGAAAT] 841 (85.11)
23 - .AATGTATT. 647 (93.07)
23 - [AATTGATT] 419 (85.79)
24 + [AATTAATT] 272 (89.77)
24 + [AATTCAAT] 570 (85.11)
24 + .AATGAATT. 726 (94.88)
24 - .AATTCATT. 726 (94.88)
24 - [ATTGAATT] 570 (85.11)
24 - [AATTAATT] 272 (89.77)
25 + .AATACATT. 392 (93.07)
25 + [TATTCATT] 751 (85.02)
25 + [AATGAATA] 778 (85.02)
25 + [AAAGCATT] 1119 (89.88)
25 - [AATGCTTT] 1119 (89.88)
25 - [TATTCATT] 778 (85.02)
25 - [AATGAATA] 751 (85.02)
25 - .AATGTATT. 392 (93.07)
26 + [AATATATT] 46 (86.14)
26 + [AATTTATT] 962 (87.96)
26 - [AATAAATT] 962 (87.96)
26 - [AATATATT] 46 (86.14)
27 + .AATTCATT. 1413 (94.88)
27 + [AAAGCATT] 1472 (89.88)
27 - [AATGCTTT] 1472 (89.88)
27 - .AATGAATT. 1413 (94.88)
28 + .TATGCATT. 422 (90.14)
28 + [AATTAATT] 711 (89.77)
28 + .TATGCATT. 1483 (90.14)
28 + [TATTCATT] 1534 (85.02)
28 - [AATGAATA] 1534 (85.02)
28 - .AATGCATA. 1483 (90.14)
28 - [AATTAATT] 711 (89.77)
28 - .AATGCATA. 422 (90.14)
29 + [TATTCATT] 431 (85.02)
29 + [AATGCACT] 953 (86.00)
29 + [AATTGATT] 1231 (85.79)
29 + .AATGCATA. 1436 (90.14)
29 - .TATGCATT. 1436 (90.14)
29 - [AATCAATT] 1231 (85.79)
29 - [AGTGCATT] 953 (86.00)
29 - [AATGAATA] 431 (85.02)
31 + [ATTGAATT] 210 (85.11)
31 + [AAAGCATT] 618 (89.88)
31 + .TATGCATT. 705 (90.14)
31 - .AATGCATA. 705 (90.14)
31 - [AATGCTTT] 618 (89.88)
31 - [AATTCAAT] 210 (85.11)
32 + .AATGTATT. 164 (93.07)
32 + [TATTCATT] 168 (85.02)
32 + [AATAAATT] 1115 (87.96)
32 + [CATGCATT] 1651 (88.21)
32 + [AATGAAAT] 1981 (85.11)
32 - [ATTTCATT] 1981 (85.11)
32 - [AATGCATG] 1651 (88.21)
32 - [AATTTATT] 1115 (87.96)
32 - [AATGAATA] 168 (85.02)
32 - .AATACATT. 164 (93.07)
33 + [TATTCATT] 1325 (85.02)
33 + .TATGCATT. 1454 (90.14)
33 + .TATGCATT. 1597 (90.14)
33 + .AATGAATT. 1691 (94.88)
33 - .AATTCATT. 1691 (94.88)
33 - .AATGCATA. 1597 (90.14)
33 - .AATGCATA. 1454 (90.14)
33 - [AATGAATA] 1325 (85.02)
34 + .AATGCATA. 671 (90.14)
34 + .AATGCATT. 1380 (100.00)
34 - .AATGCATT. 1380 (100.00)
34 - .TATGCATT. 671 (90.14)
35 + [AATGAAAT] 100 (85.11)
35 + [AATTCATA] 955 (85.02)
35 + [AATGCATG] 1020 (88.21)
35 - [CATGCATT] 1020 (88.21)
35 - [TATGAATT] 955 (85.02)
35 - [ATTTCATT] 100 (85.11)
36 + .AATGCATT. 660 (100.00)
36 - .AATGCATT. 660 (100.00)
37 + .ATTGCATT. 317 (90.22)
37 + [AATTTATT] 1156 (87.96)
37 + [CATGCATT] 1911 (88.21)
37 - [AATGCATG] 1911 (88.21)
37 - [AATAAATT] 1156 (87.96)
37 - .AATGCAAT. 317 (90.22)
39 + .AATGAATT. 1457 (94.88)
39 - .AATTCATT. 1457 (94.88)
40 + .AATACATT. 296 (93.07)
40 + [AATTAATT] 563 (89.77)
40 - [AATTAATT] 563 (89.77)
40 - .AATGTATT. 296 (93.07)
41 + [ATTTCATT] 363 (85.11)
41 + [AATGAAAT] 611 (85.11)
41 + [ATTTCATT] 1137 (85.11)
41 + [AATTTATT] 1714 (87.96)
41 - [AATAAATT] 1714 (87.96)
41 - [AATGAAAT] 1137 (85.11)
41 - [ATTTCATT] 611 (85.11)
41 - [AATGAAAT] 363 (85.11)
42 + [ATTTCATT] 204 (85.11)
42 + [CATGCATT] 660 (88.21)
42 + [ATTTCATT] 806 (85.11)
42 - [AATGAAAT] 806 (85.11)
42 - [AATGCATG] 660 (88.21)
42 - [AATGAAAT] 204 (85.11)
43 + [AATTCATA] 333 (85.02)
43 + .AATACATT. 493 (93.07)
43 + .AATGCATT. 575 (100.00)
43 + [AATTAATT] 816 (89.77)
43 - [AATTAATT] 816 (89.77)
43 - .AATGCATT. 575 (100.00)
43 - .AATGTATT. 493 (93.07)
43 - [TATGAATT] 333 (85.02)
44 + .AATGTATT. 224 (93.07)
44 + [CATGCATT] 881 (88.21)
44 - [AATGCATG] 881 (88.21)
44 - .AATACATT. 224 (93.07)
45 + [AATGAATA] 47 (85.02)
45 - [TATTCATT] 47 (85.02)
46 + [TATTCATT] 351 (85.02)
46 + .AATGCATT. 978 (100.00)
46 - .AATGCATT. 978 (100.00)
46 - [AATGAATA] 351 (85.02)
47 + [AATAAATT] 312 (87.96)
47 + [AATGAATA] 549 (85.02)
47 + [ATTGAATT] 562 (85.11)
47 + .AATACATT. 619 (93.07)
47 + [AAAGCATT] 645 (89.88)
47 + [AATTTATT] 932 (87.96)
47 + [AATGAAAT] 1274 (85.11)
47 + [AATTCATA] 1469 (85.02)
47 + [TATGAATT] 1498 (85.02)
47 + [AATGCATG] 1552 (88.21)
47 - [CATGCATT] 1552 (88.21)
47 - [AATTCATA] 1498 (85.02)
47 - [TATGAATT] 1469 (85.02)
47 - [ATTTCATT] 1274 (85.11)
47 - [AATAAATT] 932 (87.96)
47 - [AATGCTTT] 645 (89.88)
47 - .AATGTATT. 619 (93.07)
47 - [AATTCAAT] 562 (85.11)
47 - [TATTCATT] 549 (85.02)
47 - [AATTTATT] 312 (87.96)
48 + .AATGAATT. 855 (94.88)
48 + [AATTCATA] 1006 (85.02)
48 + [AATTCATA] 1953 (85.02)
48 - [TATGAATT] 1953 (85.02)
48 - [TATGAATT] 1006 (85.02)
48 - .AATTCATT. 855 (94.88)
49 + [ATTGAATT] 283 (85.11)
49 + [ATTTCATT] 716 (85.11)
49 + [ACTGCATT] 1078 (86.00)
49 + [AATGAATA] 1102 (85.02)
49 + .AATTCATT. 1518 (94.88)
49 + .AATGCATT. 1529 (100.00)
49 + [AATGCATC] 1656 (86.88)
49 + [ATTTCATT] 1812 (85.11)
49 - [AATGAAAT] 1812 (85.11)
49 - [GATGCATT] 1656 (86.88)
49 - .AATGCATT. 1529 (100.00)
49 - .AATGAATT. 1518 (94.88)
49 - [TATTCATT] 1102 (85.02)
49 - [AATGCAGT] 1078 (86.00)
49 - [AATGAAAT] 716 (85.11)
49 - [AATTCAAT] 283 (85.11)
50 + [ATTTCATT] 540 (85.11)
50 + [AATAAATT] 562 (87.96)
50 + .AATGAATT. 598 (94.88)
50 + [ATTTCATT] 1187 (85.11)
50 + .AATGTATT. 1221 (93.07)
50 + [AATGAAAT] 1305 (85.11)
50 + [ATTTCATT] 1311 (85.11)
50 + .AATGAATT. 1502 (94.88)
50 - .AATTCATT. 1502 (94.88)
50 - [AATGAAAT] 1311 (85.11)
50 - [ATTTCATT] 1305 (85.11)
50 - .AATACATT. 1221 (93.07)
50 - [AATGAAAT] 1187 (85.11)
50 - .AATTCATT. 598 (94.88)
50 - [AATTTATT] 562 (87.96)
50 - [AATGAAAT] 540 (85.11)
51 + [AATTTATT] 1157 (87.96)
51 - [AATAAATT] 1157 (87.96)
52 + [ATTGAATT] 90 (85.11)
52 + .AATGTATT. 156 (93.07)
52 + .AATACATT. 396 (93.07)
52 + .AATTCATT. 682 (94.88)
52 - .AATGAATT. 682 (94.88)
52 - .AATGTATT. 396 (93.07)
52 - .AATACATT. 156 (93.07)
52 - [AATTCAAT] 90 (85.11)
53 + [AAGGCATT] 77 (85.80)
53 - [AATGCCTT] 77 (85.80)
54 + [AATGCTTT] 59 (89.88)
54 + .AATGCATT. 228 (100.00)
54 + .AATGAATT. 264 (94.88)
54 + [AATTGATT] 977 (85.79)
54 + .AATGTATT. 1129 (93.07)
54 + .AATTCATT. 1228 (94.88)
54 + [ATTTCATT] 1351 (85.11)
54 - [AATGAAAT] 1351 (85.11)
54 - .AATGAATT. 1228 (94.88)
54 - .AATACATT. 1129 (93.07)
54 - [AATCAATT] 977 (85.79)
54 - .AATTCATT. 264 (94.88)
54 - .AATGCATT. 228 (100.00)
54 - [AAAGCATT] 59 (89.88)
55 + .AATGCATA. 189 (90.14)
55 + .TATGCATT. 955 (90.14)
55 + [TATTCATT] 1010 (85.02)
55 - [AATGAATA] 1010 (85.02)
55 - .AATGCATA. 955 (90.14)
55 - .TATGCATT. 189 (90.14)
56 + [AATATATT] 336 (86.14)
56 + [ATTGAATT] 1910 (85.11)
56 - [AATTCAAT] 1910 (85.11)
56 - [AATATATT] 336 (86.14)
57 + [AATTAATT] 376 (89.77)
57 + .AATGGATT. 591 (90.91)
57 + .AATCCATT. 871 (90.91)
57 + .AATGCATT. 1386 (100.00)
57 + [CATGCATT] 1551 (88.21)
57 - [AATGCATG] 1551 (88.21)
57 - .AATGCATT. 1386 (100.00)
57 - .AATGGATT. 871 (90.91)
57 - .AATCCATT. 591 (90.91)
57 - [AATTAATT] 376 (89.77)
58 + .AATGCATA. 50 (90.14)
58 + [AATTCAAT] 476 (85.11)
58 + [AATTAATT] 626 (89.77)
58 + [AATTGATT] 926 (85.79)
58 + .AATTCATT. 1262 (94.88)
58 + [AATGAAAT] 1455 (85.11)
58 + .AATCCATT. 1653 (90.91)
58 + .AATGCATT. 1936 (100.00)
58 - .AATGCATT. 1936 (100.00)
58 - .AATGGATT. 1653 (90.91)
58 - [ATTTCATT] 1455 (85.11)
58 - .AATGAATT. 1262 (94.88)
58 - [AATCAATT] 926 (85.79)
58 - [AATTAATT] 626 (89.77)
58 - [ATTGAATT] 476 (85.11)
58 - .TATGCATT. 50 (90.14)
59 + .TATGCATT. 577 (90.14)
59 + .AATACATT. 740 (93.07)
59 - .AATGTATT. 740 (93.07)
59 - .AATGCATA. 577 (90.14)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1090 | 78 | 58 | 120 | | | | 125 | 0 | 0 | 15 |
2 | | 1122 | 49 | 49 | 126 | | | | 137 | 0 | 0 | 3 |
3 | | 117 | 56 | 47 | 1126 | | | | 0 | 0 | 0 | 140 |
4 | | 172 | 106 | 810 | 258 | | | | 15 | 3 | 101 | 21 |
5 | | 258 | 810 | 106 | 172 | | | | 21 | 101 | 3 | 15 |
6 | | 1126 | 47 | 56 | 117 | | | | 140 | 0 | 0 | 0 |
7 | | 126 | 49 | 49 | 1122 | | | | 3 | 0 | 0 | 137 |
8 | | 120 | 58 | 78 | 1090 | | | | 15 | 0 | 0 | 125 |
ATGCATTTGT
ACAAATGCAT
1 redundant motifs found:
TATGCATTTG -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .ATGCATTTGT. 1268 (100.00)
1 - .ATGAATTTGT. 1171 (95.90)
2 + [ATACTTTTTT] 903 (85.65)
2 - [TTCCATTTTT] 1132 (85.10)
2 - [ATTTATTTTT] 518 (89.33)
3 + .ATGCATTTCT. 22 (94.22)
3 + .ATGCATTTGT. 792 (100.00)
3 - [TTCCATTTTT] 564 (85.10)
3 - [TTCCATTTTT] 506 (85.10)
3 - [TTTCATTTTT] 156 (88.52)
4 + [AAGAATTTTT] 346 (86.28)
4 + [ATCCATTTGA] 790 (86.24)
4 + [TTTCATTTTT] 890 (88.52)
4 + [AAACATTTTT] 1010 (85.26)
4 + [ATTCAATTTT] 1045 (86.54)
4 + [ATGATTTTTT] 1410 (86.67)
4 + [ATACTTTTTT] 1781 (85.65)
4 - [TTCCATTTTT] 1611 (85.10)
4 - [AATCATTTTT] 1406 (87.05)
4 - [ATCAATTTTT] 1230 (87.42)
5 + [ATGCATATTT] 136 (88.69)
5 + [ATTCATATTT] 1245 (85.36)
5 - [ATGAATATGT] 1633 (86.32)
5 - .ATGAATTTTT. 1010 (94.17)
6 - [ATGCATTTGC] 382 (88.86)
6 - [TTGCTTTTGT] 3 (86.08)
7 + .ATTCATTTGT. 955 (96.67)
7 + .ATGCAATTGT. 1309 (91.60)
7 + .ATTCATTTTT. 1322 (94.94)
7 - [ATTCAATTTT] 1033 (86.54)
7 - [ATTTATTTAT] 173 (85.40)
8 + [ATTCATATTT] 206 (85.36)
8 - [AAACATTTGT] 1149 (87.00)
9 + .ATGCATTTTT. 596 (98.27)
9 + [TTGTATTTTT] 621 (86.24)
9 + .ATGCATTTGT. 1097 (100.00)
9 - .ATGCATTTAT. 1093 (94.34)
9 - [TTGCATTTGA] 1081 (86.57)
9 - [ATTGATTTGT] 827 (89.29)
10 - .ATGCATTTTT. 1136 (98.27)
10 - [ATGAATTTTA] 1080 (87.16)
10 - [ATATATTTGT] 995 (89.28)
10 - [ATGAAATTGT] 556 (87.50)
10 - [ATTCATCTGT] 112 (85.19)
11 + .ATTCATTTAT. 1378 (91.01)
11 - [ATTTATTTTT] 1564 (89.33)
11 - [ATGAATTTGG] 1374 (85.34)
11 - [ATGTATTTCT] 505 (88.62)
11 - [ATTCTTTTGT] 473 (89.17)
12 + [TTGTATTTTT] 413 (86.24)
12 - [ATTAATTTCT] 297 (86.80)
13 + [ATCAATTTTT] 685 (87.42)
13 - .ATGTATTTTT. 194 (92.66)
14 + [AAGAATTTGT] 224 (88.01)
14 + [TTCCATTTTT] 580 (85.10)
14 + [ATTTATTTTT] 604 (89.33)
14 + .ATTAATTTTT. 762 (90.84)
14 + .ATGCTTTTTT. 826 (90.77)
14 + [ATTAATTTGA] 849 (85.56)
14 + [ACGCATTTTT] 1320 (88.02)
14 - [ATTCTTTTTT] 1078 (87.44)
14 - [ATTTATTTCT] 798 (85.29)
14 - [ATTAATTTAT] 758 (86.91)
15 + [ATGATTTTTT] 13 (86.67)
15 + [ATCTATTTTT] 83 (85.91)
15 + .ATGAATTTAT. 609 (90.24)
15 + [ATGCATTTCA] 1465 (87.21)
15 + .ATTAATTTTT. 1661 (90.84)
15 - [AGTCATTTGT] 1532 (85.66)
16 + [ATGATTTTTT] 804 (86.67)
16 + [ATGCATGTTT] 841 (87.49)
16 + .ATGAATTTAT. 941 (90.24)
16 + [ATCAATTTTT] 1023 (87.42)
16 - [ATTGATTTTT] 1019 (87.56)
16 - [ATGAAATTTT] 886 (85.76)
17 + .ATGTATTTGT. 873 (94.39)
17 - [ATTTATTTTT] 747 (89.33)
17 - [ATTGATTTTT] 555 (87.56)
17 - [ATGTATTTAT] 299 (88.73)
18 + [ATCAATTTTT] 134 (87.42)
18 + [TTCCATTTTT] 365 (85.10)
18 - [AAGTATTTGT] 189 (86.50)
19 + [ATACATTTAT] 437 (89.22)
19 - [ATTCATTTGC] 1325 (85.54)
20 + [TTGAATTTTT] 29 (87.75)
21 + .ATAAATTTGT. 343 (90.79)
21 + [AATCATTTTT] 453 (87.05)
21 + [ATTTATTTTT] 1931 (89.33)
22 + [TTCCATTTTT] 503 (85.10)
22 - [TTTCATTTTT] 659 (88.52)
22 - [ATTCAATTTT] 489 (86.54)
23 + [ATGCATTGGT] 1423 (88.29)
24 + [ATGAATTTGA] 46 (88.89)
24 + [ATTCAATTTT] 571 (86.54)
24 + .ATGGATTTTT. 999 (90.88)
24 - [ATTGATTTTT] 719 (87.56)
24 - [TTGAATTTTT] 567 (87.75)
24 - [TTGAATTTTT] 453 (87.75)
25 + [ATTCTTTTGT] 375 (89.17)
25 + .ATACATTTTT. 393 (93.15)
25 + [AAGAATTTGT] 742 (88.01)
25 + [ATTCATTTTA] 752 (87.93)
25 + .AAGCATTTTT. 1120 (90.38)
25 + [ATACTTTTTT] 1503 (85.65)
25 - [ATGGATTTCT] 929 (86.84)
25 - .ATGTATTTTT. 389 (92.66)
25 - [AAGAATTTTT] 371 (86.28)
26 - [ATTCAATTTT] 494 (86.54)
27 + [ATGAATTTGG] 753 (85.34)
27 + [ATTCATTCGT] 1418 (85.38)
27 + [AAGAATTTTT] 1496 (86.28)
27 - [TTGAATTTTT] 1445 (87.75)
28 + [TTTCATTTTT] 198 (88.52)
28 + [TTTCATTTTT] 209 (88.52)
28 + .ATGCATTTAT. 423 (94.34)
28 + [ATTCAATTGT] 1315 (88.27)
28 + .ATGCATTTGT. 1484 (100.00)
29 + [ATTCTTTTTT] 208 (87.44)
29 + [ATTCATTCGT] 432 (85.38)
29 + .ATTCATTTTT. 834 (94.94)
29 + [TTGGATTTGT] 1733 (86.20)
29 + .ATACATTTTT. 1755 (93.15)
30 - [ATGATTTTTT] 117 (86.67)
31 + [ATCTATTTTT] 286 (85.91)
31 - [ATAGATTTTT] 282 (85.77)
32 + .ATTCATTTTT. 169 (94.94)
32 + [ATGCATTTCA] 1652 (87.21)
32 - [TTCCATTTTT] 950 (85.10)
32 - .ATACATTTTT. 161 (93.15)
33 + [TTGTATTTTT] 1273 (86.24)
33 + [ATTCATTTTA] 1326 (87.93)
33 + [TTACATTTTT] 1333 (86.73)
33 + .ATGCATTTGT. 1598 (100.00)
33 - .ATGAATTTTT. 1512 (94.17)
33 - .ATTCATTTTT. 394 (94.94)
34 + [CTGTATTTGT] 40 (85.12)
34 + [ATAAATTTTT] 1061 (89.05)
34 - [TTCCATTTTT] 294 (85.10)
35 - .ATGCATTTTT. 1017 (98.27)
35 - [ATGAATTTTA] 952 (87.16)
35 - .ATTCATTTCT. 924 (90.90)
36 + [ATTCTTTTGT] 211 (89.17)
36 + .ATGCATTTGT. 661 (100.00)
36 - .ATGCATTTAT. 657 (94.34)
36 - .TTGCATTTGT. 645 (93.58)
37 + .ATGCAATTGT. 107 (91.60)
37 + [TTGCATTTCT] 318 (87.80)
37 + .ATGCATTTTT. 1912 (98.27)
37 - [AAACATTTTT] 1982 (85.26)
37 - [ATTCTTTTTT] 1568 (87.44)
39 + [AAGAATTTGT] 811 (88.01)
39 + .ATGAATTTTT. 1458 (94.17)
39 - .ATTCATTTTT. 1454 (94.94)
39 - [ATTCATGTGT] 614 (85.89)
40 - [ATTGATTTTT] 205 (87.56)
41 + [ATGAAATTGT] 612 (87.50)
41 + [TTTCATTTTT] 1542 (88.52)
41 - [ATGATTTTTT] 1642 (86.67)
41 - [ATCTATTTTT] 659 (85.91)
42 + [CTTCATTTTT] 66 (85.67)
42 + [TTTAATTTGT] 604 (86.15)
42 + .ATGCATTTTA. 661 (91.26)
42 + [AATCATTTTT] 767 (87.05)
42 + .ATTTATTTGT. 1260 (91.07)
42 + .ATGTATTTTT. 1359 (92.66)
42 - [ATTTATTTAT] 1181 (85.40)
43 + [ATACATTTTA] 494 (86.14)
43 + .ATTAATTTTT. 817 (90.84)
43 + .ATTAATTTTT. 831 (90.84)
43 + [ATGTTTTTTT] 1065 (85.16)
43 - [TTGAATTTTT] 859 (87.75)
43 - .ATTAATTTTT. 813 (90.84)
43 - [ATGAATTTGG] 371 (85.34)
43 - .ATGAATTTTT. 330 (94.17)
43 - .ATTCATTTTT. 298 (94.94)
43 - [AAACATTTTT] 27 (85.26)
44 + [TTGAATTTTT] 12 (87.75)
44 + [ATGATTTTTT] 60 (86.67)
44 + [ATGTATTTAT] 225 (88.73)
44 + [ATTTATTTCT] 236 (85.29)
44 + [ATTCTTTTGT] 815 (89.17)
44 + [ATGCATTTCA] 882 (87.21)
44 + .ATTAATTTTT. 1101 (90.84)
44 + [TTTCATTTTT] 1340 (88.52)
45 + [TTGAATTTTT] 1221 (87.75)
45 - [ATGATTTTTT] 1295 (86.67)
45 - [ATGCAATTTT] 425 (89.86)
45 - [ATGTTTTTGT] 242 (86.89)
45 - [ATTCATTTGA] 44 (89.66)
46 + [ATACATTTTA] 56 (86.14)
46 + [TTGAATTTTT] 594 (87.75)
46 + .ATGCATTTGT. 979 (100.00)
46 - .ATGCATTTAT. 975 (94.34)
46 - [ATTTATTTTT] 971 (89.33)
46 - [TTGCATTTGA] 963 (86.57)
46 - .ATGTATTTTT. 391 (92.66)
47 + [ATGCTTTTCT] 79 (86.72)
47 + [TTACATTTTT] 440 (86.73)
47 + [TTGAATTTTT] 563 (87.75)
47 - .ATGCATTTTT. 1549 (98.27)
47 - [ATGAATTTTA] 1466 (87.16)
47 - [AAACATTTTT] 1322 (85.26)
47 - [ATAAATTTCT] 929 (85.01)
47 - [ATTCTTTTTT] 695 (87.44)
47 - .ATTCATTTTT. 546 (94.94)
47 - .ATTTATTTGT. 309 (91.07)
48 + [ATGAATTTGA] 856 (88.89)
48 + [AAGAATTTTT] 891 (86.28)
48 + [ATTCAGTTGT] 1282 (85.24)
48 + [TTCCATTTTT] 1493 (85.10)
48 + [TTCCATTTTT] 1831 (85.10)
48 + [ATTCATATTT] 1954 (85.36)
48 - [ATGAATTTTA] 1950 (87.16)
48 - [ATTCATTTTA] 852 (87.93)
49 + [TTGAATTTTT] 284 (87.75)
49 - .ATGCATTTCT. 1653 (94.22)
49 - .ATGAATTTGT. 1515 (95.90)
49 - .TTGCATTTGT. 862 (93.58)
49 - [AAACATTTGT] 743 (87.00)
50 + [TTTCATTTTT] 541 (88.52)
50 + [TTCCATTTTT] 604 (85.10)
50 - .ATTCATTTTT. 595 (94.94)
50 - [ATGCAATTTT] 73 (89.86)
51 + [ATCAATTTTT] 1036 (87.42)
51 + [ATTCATTTGA] 1198 (89.66)
51 - [ATTCTTTTGT] 1129 (89.17)
51 - .ATTTATTTGT. 797 (91.07)
51 - [TTGTATTTTT] 333 (86.24)
52 + [ATGTTTTTGT] 338 (86.89)
52 + [ATAAATTTTT] 1313 (89.05)
52 + .AAGCATTTTT. 1611 (90.38)
52 + [ATACATTTTA] 1753 (86.14)
52 - [TTACATTTTT] 989 (86.73)
52 - .ATTAATTTGT. 897 (92.57)
52 - .ATGTATTTTT. 393 (92.66)
52 - [ATACATTTTA] 153 (86.14)
52 - [TTGTATTTTT] 133 (86.24)
52 - [ATGAAATTTT] 26 (85.76)
53 + [AGGCATTTTT] 78 (87.25)
53 - [ATCTATTTGT] 1244 (87.64)
53 - [ATTAATTTCT] 749 (86.80)
54 + [ATGCATTTAA] 229 (87.32)
54 + [ATGAATTTTA] 265 (87.16)
54 + [ATGCTTTTCT] 1501 (86.72)
54 - [ATGAATATGT] 1578 (86.32)
54 - [ATCAATTTTT] 974 (87.42)
54 - [TTACATTTTT] 544 (86.73)
54 - [ATGCCTTTGT] 306 (87.31)
54 - .ATTCATTTAT. 261 (91.01)
54 - .ATTTATTTGT. 257 (91.07)
54 - .ATGCATTTTA. 225 (91.26)
55 + .ATGCATTTGT. 956 (100.00)
56 + [AATCATTTTT] 217 (87.05)
56 - [TTTCATTTTT] 1279 (88.52)
57 + .AAGCATTTTT. 188 (90.38)
57 + .ATCCATTTTT. 872 (91.52)
57 + [ATGAAATTTT] 974 (85.76)
57 + [ATCAATTTTT] 1231 (87.42)
57 + .ATGCATTTGT. 1552 (100.00)
57 - .ATGAATTTGT. 1448 (95.90)
57 - [CTGCATTTTT] 1362 (89.00)
57 - [ATGTTTTTTT] 283 (85.16)
58 + [TTCCATTTGT] 460 (86.83)
58 + [TTACATTTTT] 1759 (86.73)
58 - [ATACATATGT] 1727 (85.31)
58 - .ATACATTTTT. 1708 (93.15)
58 - .ATGAATTTGT. 1259 (95.90)
58 - [ATGTTTTTTT] 826 (85.16)
58 - .ATTAATTTTT. 623 (90.84)
58 - [ATGCATTTGC] 47 (88.86)
58 - [ATTTATTTTT] 11 (89.33)
59 + .ATTAATTTTT. 373 (90.84)
59 + [ATACATTTAT] 870 (89.22)
59 + [CTTCATTTTT] 939 (85.67)
59 - [ATGTATTTGA] 737 (87.38)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 934 | 88 | 55 | 182 | | | | 76 | 0 | 0 | 2 |
2 | | 133 | 73 | 60 | 993 | | | | 3 | 0 | 0 | 75 |
3 | | 182 | 120 | 670 | 287 | | | | 5 | 1 | 47 | 25 |
4 | | 254 | 722 | 110 | 173 | | | | 20 | 47 | 1 | 10 |
5 | | 1014 | 40 | 55 | 150 | | | | 77 | 0 | 0 | 1 |
6 | | 121 | 52 | 56 | 1030 | | | | 2 | 0 | 0 | 76 |
7 | | 91 | 56 | 67 | 1045 | | | | 0 | 0 | 0 | 78 |
8 | | 79 | 60 | 54 | 1066 | | | | 0 | 0 | 0 | 78 |
9 | | 141 | 137 | 597 | 384 | | | | 8 | 3 | 25 | 42 |
10 | | 163 | 57 | 66 | 973 | | | | 2 | 0 | 0 | 76 |
AAAGAGAAGAAG
CTTCTTCTCTTT
4 redundant motifs found:
AAAGAGAAGAGA - AGGGAGAAGAGA - AAAAGAGAAGAA - AAGGAGAAGAGA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .AAAGAGAAAAAA. 609 (95.53)
2 + [AAAAAAAATAAA] 1306 (86.40)
4 + .AAATAGAAAAAG. 963 (92.26)
4 + .AAAAAGAAAAAA. 969 (93.81)
4 + [AAAGAAAAAAGA] 971 (85.14)
4 + [AGAAAAAAGAAG] 973 (88.02)
4 + [AAAAAGAAGAGA] 976 (88.63)
4 + [AAAGAAGAGAAG] 978 (89.38)
4 + [AATAAGAAAAAG] 1113 (89.18)
4 + .AAAGAGATGAAG. 1644 (92.46)
4 + [AGAAAAAAAAAG] 1672 (85.68)
4 + [AAAAAAAAAGAG] 1674 (85.32)
4 + [AAAAAAAAGAGA] 1675 (85.76)
4 - [AAAAAGGAAAAA] 1053 (86.06)
4 - [AAAAGGAAAAAA] 1052 (85.43)
4 - [AAGAAAAAAAAG] 1026 (86.34)
4 - .AAAAAAAAGAAG. 1023 (95.41)
4 - .AAAAAGAAGAAG. 1020 (98.28)
4 - [AAGAAGAAGAAA] 1017 (89.41)
4 - [AAAGAGAAAGAG] 709 (89.92)
4 - .AAAGAGAAGATG. 640 (92.87)
4 - .AAAGAAAAGAAG. 7 (97.13)
5 + [AAAAAAAAGAAC] 272 (88.90)
5 + [AAATAGAAGAAT] 1520 (89.79)
5 - [AAAATAAAAAAG] 86 (86.33)
6 + .AAATAGAAAAAA. 798 (90.12)
6 + [AACAAAAAGAAG] 1111 (86.23)
6 + [AAAAAGAAGTAA] 1114 (87.07)
6 + [AAAAAAAAGGAG] 1192 (87.66)
6 + .AAAAAGGAGAAG. 1195 (90.53)
6 + .GAAGAGAAAAAG. 1203 (90.95)
7 - [AAAGAGAAGAGT] 394 (87.68)
8 - .AGAGAGAAAAAG. 1377 (90.27)
8 - [AAAGAAGAGAAG] 1345 (89.38)
8 - [AAAGAATAGAAA] 1190 (86.60)
9 + .AAAGAGAAGAGA. 1162 (90.35)
9 - [AAGAAGAAAAAG] 1223 (89.21)
9 - [CAAAAGAAGAAG] 685 (89.45)
9 - [AAAAAGAGAAAA] 434 (85.36)
9 - .AAAGAGAAAAAA. 432 (95.53)
9 - [AGAGAAAAAAAA] 430 (85.27)
9 - [AAAAAAAAGAGA] 426 (85.76)
9 - [AAAAAAGAGAAA] 424 (85.53)
9 - [AAAAAGAGAAAG] 423 (87.50)
9 - [AAAGAGAAAGAA] 421 (87.78)
9 - [AACGAGAAGAAA] 112 (88.69)
9 - [AAAAAGATGAAA] 27 (88.61)
10 + [AAACAAAAAAAA] 29 (86.87)
10 + .AAAAAAAAGAAG. 1040 (95.41)
10 - .AAAAAGGAGAAG. 785 (90.53)
10 - .AAGGAGAAGAAG. 782 (93.27)
11 + .AAATAGAAGAAA. 56 (92.46)
11 - [AAAAAAATAAAG] 1744 (85.54)
11 - [AGAAAGAAAAAG] 1693 (88.55)
11 - [ATAAAGAAAAAG] 1511 (87.23)
11 - [AAAGAAAAAGAG] 1509 (87.05)
11 - .GAAGAGAAGAAG. 1492 (93.29)
11 - [AAAGATAATAAG] 957 (86.85)
12 + [AAAATTAAGAAG] 670 (85.26)
12 - [AGAAAAAAGAAA] 94 (85.88)
12 - [AAAGAAATGAAA] 89 (87.46)
13 + [GAAGAGGAGAAG] 520 (85.54)
13 - .AAAGTGAAAAAG. 1177 (90.92)
13 - .AAAAAAAAGAAG. 571 (95.41)
13 - [AAAAAGAAGGAA] 568 (88.39)
13 - [AAGAAAAAGAAG] 446 (88.68)
13 - .AAAAAGAAGAAG. 443 (98.28)
14 + .GAAGAAAAGAAG. 423 (90.42)
14 + [GAAAAGAAGAAA] 426 (89.43)
14 + [AGAAAAAAAAAG] 1073 (85.68)
14 + .AAAAAAAAGAAT. 1076 (90.60)
14 - .AGAGAGAAGAAA. 1274 (90.47)
14 - [AAAAAAGAGAAA] 255 (85.53)
14 - [AAAAAGAGAAAA] 254 (85.36)
14 - .AAAGAGAAAAAG. 252 (97.66)
15 + [AATAAAAAGAAG] 1596 (88.65)
15 + .AAAAAGAAGAAA. 1599 (96.14)
15 - [AAACAGTAGAAG] 1702 (85.82)
15 - [AAAAAGAAGTAG] 700 (89.21)
15 - [AAAGAAAAGTAG] 43 (88.06)
16 + [AAACAGAAAAAT] 242 (87.07)
16 + [AAAAAAAACAAA] 920 (86.47)
16 + [AAAAACAAAAAG] 923 (88.49)
16 + [AAAAAGCAGAAA] 1202 (86.95)
16 + .AAAAAGAAAAAA. 1287 (93.81)
16 + [AAAGAAAAAAAT] 1289 (89.99)
16 - [AAAGAAAAGAGA] 1721 (87.48)
16 - .AAAGAGAAGAGG. 1348 (92.49)
16 - [AAAGAAAAAAAT] 807 (89.99)
16 - .AAAGAGAACAAA. 689 (91.07)
17 - [AAAGGGAAAAAA] 684 (87.15)
18 + [AAAGAAAATAAA] 39 (88.13)
18 + [AAATTGAAAAAG] 602 (85.51)
18 + .AAAAAGAAAAAA. 608 (93.81)
18 + [AAAGAAAAAAAT] 610 (89.99)
19 + [AAAGGGAAAAAA] 1076 (87.15)
19 + .AAAAAGGAGAAG. 1083 (90.53)
19 + .AAGGAGAAGAAA. 1086 (91.14)
19 - [AAAGAGAGGAAA] 1607 (89.42)
20 - [CAAGAGAAAAAA] 531 (86.70)
21 + [AAAGAGAATAGG] 1740 (85.62)
21 - [GAAAAAAAGAAG] 1949 (88.70)
21 - [AAAAAGAAGAGA] 1946 (88.63)
21 - [AAAGAGAATAGG] 1213 (85.62)
21 - [AAATAAAAGAAC] 1194 (85.21)
21 - [GAAGTGAAGAAG] 992 (86.55)
21 - [GAAAAAAAGAAA] 792 (86.56)
22 + [AAAGTGAAAAAT] 340 (86.12)
22 + [AACGAAAAAAAG] 427 (85.61)
22 + [GAAAAAAAGAAG] 430 (88.70)
22 + [AAAAAGAAGGAA] 433 (88.39)
22 + [AAACAAAAGAAA] 459 (89.20)
24 + .AAAGAGAAAAAA. 423 (95.53)
24 - .AAAGAGAAAAAG. 849 (97.66)
25 + [AAATATAAAAAG] 68 (85.98)
25 + [ATAGAAAAAAAG] 783 (86.08)
25 + [GAAAAAAAGAAA] 786 (86.56)
25 + [AAAAAGAAAGAG] 789 (88.19)
25 + [AATAAAAAGAAA] 1214 (86.51)
25 - [TAAAAGAAAAAG] 1074 (87.40)
25 - [AAGAAAAAGAAG] 1071 (88.68)
25 - [AAAGAAAACAAT] 1010 (85.52)
25 - [AGAGAAAAAAAA] 700 (85.27)
26 + .AAAAAAAAGAAA. 481 (93.27)
26 + .AAAAAGAAAAAA. 484 (93.81)
26 + .AAAGAAAAAAAA. 486 (92.66)
26 + [AAAAAAAAAATG] 1036 (85.95)
27 + .AAGGAAAAGAAG. 469 (90.40)
27 + [AAAAAGAAAACG] 740 (86.75)
27 + .GAAGAGAAGAAA. 809 (91.16)
28 + [AAAAATAAAAAG] 1215 (89.66)
28 + [AAAAAGATAAAA] 1221 (86.27)
28 + [AAAGATAAAAAT] 1223 (86.58)
28 - [AAAAAAAATAAA] 965 (86.40)
28 - [AAAAATAAAAAG] 962 (89.66)
28 - [AATAAAAAGAAA] 959 (86.51)
28 - [GAAAAAAAGAAA] 340 (86.56)
28 - .AAAAAGAAAAAA. 337 (93.81)
28 - [AAAGAAAAAATA] 335 (85.53)
28 - [AAAATGAAAAAA] 206 (87.06)
28 - [AATGAAAAAAAA] 204 (85.90)
28 - [AAAAAAATGAAA] 198 (85.74)
29 + [GAAGAGAAAAAA] 27 (88.82)
29 + [AGAAAAAAGAAG] 31 (88.02)
29 + .AAAAAGAAGAAG. 34 (98.28)
29 + [AAAAAAAGGAAG] 1025 (86.96)
29 - [ATAGAGAAAAAA] 1760 (86.82)
32 + [AAAAAGAGAAAA] 1786 (85.36)
32 + .AAAGAGAAAAAG. 1788 (97.66)
32 + [AAAAGGAAGAAA] 1795 (87.77)
32 - [ACAAAGAAGAAG] 1889 (88.44)
32 - [AAAGAGAATAAT] 500 (88.33)
33 - [AAAGAGACAAAA] 1183 (86.52)
33 - [AAAAATAAAAAA] 428 (87.53)
34 + [AAAATAAAAAAG] 19 (86.33)
34 + [ATAAAAAAGAAG] 22 (86.70)
34 - [AATGAGAAAAAA] 1255 (88.77)
34 - [AAAAAGATAAAA] 1083 (86.27)
34 - [AAAGATAAAAAA] 1081 (89.25)
35 + .GAAAAGAAGAAG. 750 (91.57)
35 + [AAAAAGAAGACA] 880 (86.95)
35 - [AAAAAGAGGAAG] 816 (89.83)
36 + [AAAGAGCAAAAG] 766 (88.47)
36 - [GAAGAGAAGAAC] 850 (86.78)
36 - .ATAGAGAAGAAG. 822 (91.29)
36 - [AAAAAGAAGTAG] 798 (89.21)
36 - [AAGTAGAAGAAG] 786 (87.86)
36 - .AAGAAGAAGAAG. 780 (91.55)
36 - [AAGAAGAAGAAC] 777 (85.04)
36 - .AAAAAAAAGAAA. 473 (93.27)
36 - .AAAAAGAAAAAA. 470 (93.81)
36 - .AAAGAAAAAAAA. 468 (92.66)
36 - [AAAAAAAATAAA] 463 (86.40)
36 - [AAAAAAATAAAG] 462 (85.54)
37 + .GAAGAGAAAAAG. 134 (90.95)
37 + .AAAAAGAAAAAT. 754 (91.14)
37 + [GAAGAGAACAAG] 792 (86.49)
37 + .AAAAAGAAGAAG. 1841 (98.28)
37 + [AAACAGAAAAAA] 1861 (89.74)
37 - .AAAAAAAAGAAG. 1951 (95.41)
37 - .AAAAAGAAGAAG. 1948 (98.28)
38 + [AGAAAGAAAAAA] 108 (86.42)
38 + [AAAAAGAACAAA] 221 (89.34)
38 - .AAAAAAAAGAAG. 465 (95.41)
38 - .AAAAAGAAGAGG. 462 (90.76)
38 - .AAAAAAAAAAAG. 197 (93.07)
38 - .AAAAAAAAGAAG. 194 (95.41)
38 - [AAAAAGAAGAGA] 191 (88.63)
38 - [AAAGAAGAGAAA] 189 (87.25)
39 + [GAAAAAAAGAAG] 244 (88.70)
39 + [AAAAAGAAGTAA] 247 (87.07)
39 + [AATAAGAAAAAG] 268 (89.18)
39 + [AAGAAAAAGAAG] 271 (88.68)
39 + [AAAAACAAGAAT] 294 (86.02)
39 + [GAAAAAAAAAAG] 695 (86.36)
39 + [AAAAAAAAAAGG] 696 (85.56)
39 + [AAAGTGAAAAAA] 1357 (88.79)
39 - [AATTAGAAGAAA] 969 (85.69)
39 - [CAAGAAAAGAAA] 842 (86.16)
39 - [GAAAAGAAAAAA] 839 (87.10)
39 - [AAAGAAAAAATA] 837 (85.53)
39 - .AAATAGAAAAAA. 830 (90.12)
40 - [AAAAACAAAAAA] 458 (86.35)
40 - [AAAAAGAGAAAA] 324 (85.36)
40 - .AAAGAGAAAAAG. 322 (97.66)
41 + .AAAATGAAGAAG. 896 (91.54)
41 + .AAAGAGAAAAAT. 1078 (92.86)
41 + [AAAAAGATGAAT] 1159 (85.94)
41 + [AAAAAGCAAAAG] 1316 (86.75)
41 - [AAAAAAAAAGAG] 301 (85.32)
41 - [AAAAAAAAGAGA] 300 (85.76)
41 - [AAAAAAGAGAAA] 298 (85.53)
41 - [AAAAAGAGAAAA] 297 (85.36)
41 - [AAAGAGAAAACA] 295 (86.33)
41 - [AAAGTGAAAAAA] 29 (88.79)
42 - [AAAAAAAACAAA] 1265 (86.47)
42 - [AATTAGAAGAAG] 1028 (87.83)
43 + [AAAAAAAAGGAA] 456 (85.52)
43 - [ACAGAGAAAAAA] 1458 (85.69)
44 + .AAAGAGAAGAAG. 1019 (100.00)
45 + .AAAAAAAAAAAA. 380 (90.94)
45 + .AAAAAAAAAAAA. 381 (90.94)
45 + .AAAAAAAAAAAA. 382 (90.94)
45 + .AAAAAAAAAAAA. 383 (90.94)
45 + .AAAAAAAAAAAA. 384 (90.94)
45 + .AAAAAAAAAAAA. 385 (90.94)
45 + .AAAAAAAAAAAA. 386 (90.94)
45 + .AAAAAAAAAAAA. 387 (90.94)
45 + .AAAAAAAAAAAA. 388 (90.94)
45 + [AAAAAAAAAAAT] 389 (88.27)
45 + [AAAAATAAAAAA] 1048 (87.53)
45 + [AAATAAAAAAAA] 1050 (87.25)
45 + [AAATTGAAGAAA] 1081 (85.71)
45 - [GAAGAGAAAAAA] 979 (88.82)
45 - [AAAAAAAATAAA] 177 (86.40)
46 - .AAAGAGACGAAG. 1079 (90.99)
47 + .AAAAAAAAGAAT. 693 (90.60)
47 + .AAAAAGAAAAAG. 1392 (95.94)
47 + [CAAGAAAAGAAA] 1436 (86.16)
48 + [AAAAAAACGAAG] 291 (86.40)
48 + .AATGAGAAGAAG. 1640 (93.24)
48 + .AAGAAGAAGAAG. 1646 (91.55)
48 - [AGAAAGAAAAAG] 1878 (88.55)
48 - [ATAGAAAAGAAG] 398 (88.42)
48 - [AAAGAAGAGAAA] 393 (87.25)
49 - [AAAAAAAAGGAA] 1403 (85.52)
50 + [TAAAAGAAGAAA] 1270 (87.60)
50 - [AAAAAAAACAAA] 912 (86.47)
50 - [AAAGAGGAAAAA] 549 (87.78)
50 - [AAAAAAATGAAA] 541 (85.74)
52 + [AAAGAGCAAAAA] 1341 (86.34)
53 + [AAACAGAAGATG] 1200 (87.08)
54 + [AAAGAGAAGTAA] 713 (88.79)
55 + [AAAGCAAAAAAG] 202 (85.54)
55 + .AAAAAAAAGAAA. 775 (93.27)
55 - [AAACAAAAGAAA] 596 (89.20)
55 - .AAAGAGAAAAAA. 509 (95.53)
56 + .AAGAAGAAGAAG. 141 (91.55)
56 + .AAGAAGAAGAAG. 144 (91.55)
56 + [AAAATGAAAAAA] 1280 (87.06)
56 - .AAAAAGAAGAAA. 794 (96.14)
56 - [AGAAAGAAGAAA] 770 (88.75)
56 - [AAAGAGGAGAAC] 121 (85.75)
57 + [AAAGAAACGAAA] 19 (85.98)
57 + .AAAGACAAGAAA. 849 (90.41)
57 + [AAAAAAAACAAA] 1025 (86.47)
57 - [AGAAAAAAAAAG] 755 (85.68)
57 - [AAAAAAAAAGAG] 753 (85.32)
57 - .AAGAAGAAGAAG. 624 (91.55)
59 - .AATGAGAAGAAA. 830 (91.10)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1460 | 118 | 216 | 128 | | | | 79 | 0 | 6 | 0 |
2 | | 1518 | 92 | 185 | 127 | | | | 82 | 0 | 2 | 1 |
3 | | 1407 | 103 | 207 | 205 | | | | 75 | 0 | 8 | 2 |
4 | | 583 | 183 | 952 | 204 | | | | 47 | 0 | 34 | 4 |
5 | | 1467 | 105 | 135 | 215 | | | | 83 | 0 | 0 | 2 |
6 | | 491 | 133 | 1112 | 186 | | | | 26 | 1 | 58 | 0 |
7 | | 1508 | 110 | 166 | 138 | | | | 82 | 0 | 3 | 0 |
8 | | 1497 | 115 | 135 | 175 | | | | 83 | 1 | 0 | 1 |
9 | | 549 | 154 | 1068 | 151 | | | | 36 | 1 | 48 | 0 |
10 | | 1536 | 101 | 169 | 116 | | | | 85 | 0 | 0 | 0 |
11 | | 1454 | 106 | 171 | 191 | | | | 81 | 0 | 3 | 1 |
12 | | 535 | 154 | 983 | 250 | | | | 36 | 0 | 45 | 4 |
*** Interesting motifs (not highest-ranking) can also be :
CATGCATG
CATGCATG
4 redundant motifs found:
TCATGCATGA - ACATGCATGT - AATGCATT - ATGCAT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .CATCCATG. 600 (90.45)
1 + .AATGCATT. 1103 (90.43)
1 + [AATTCATG] 1174 (89.21)
1 + .CATGCATT. 1267 (95.21)
1 - .AATGCATG. 1267 (95.21)
1 - [CATGAATT] 1174 (89.21)
1 - .AATGCATT. 1103 (90.43)
1 - .CATGGATG. 600 (90.45)
2 + [AATGCATA] 1245 (88.04)
2 - [TATGCATT] 1245 (88.04)
3 + [TATGCATT] 21 (88.04)
3 + [AATTCATG] 697 (89.21)
3 + [TATGCATT] 791 (88.04)
3 - [AATGCATA] 791 (88.04)
3 - [CATGAATT] 697 (89.21)
3 - [AATGCATA] 21 (88.04)
4 + .CATCCATG. 227 (90.45)
4 + [CATAAATG] 695 (86.11)
4 - [CATTTATG] 695 (86.11)
4 - .CATGGATG. 227 (90.45)
5 + .CATGCATG. 786 (100.00)
5 + [TATTCATG] 1636 (86.82)
5 - [CATGAATA] 1636 (86.82)
5 - .CATGCATG. 786 (100.00)
6 + [AATGCATA] 385 (88.04)
6 + .TATGCATG. 632 (92.82)
6 + .AATGCATT. 1919 (90.43)
6 - .AATGCATT. 1919 (90.43)
6 - .CATGCATA. 632 (92.82)
6 - [TATGCATT] 385 (88.04)
8 + [CATTCATA] 205 (86.82)
8 + [AATGGATG] 397 (85.67)
8 + .AATGCATT. 1276 (90.43)
8 + [AATGCATC] 1401 (85.75)
8 - [GATGCATT] 1401 (85.75)
8 - .AATGCATT. 1276 (90.43)
8 - [CATCCATT] 397 (85.67)
8 - [TATGAATG] 205 (86.82)
9 + [GATGCATT] 595 (85.75)
9 + [CATGTATT] 890 (87.32)
9 + .AATGCATT. 1096 (90.43)
9 - .AATGCATT. 1096 (90.43)
9 - [AATACATG] 890 (87.32)
9 - [AATGCATC] 595 (85.75)
10 + .AATGCATG. 1139 (95.21)
10 - .CATGCATT. 1139 (95.21)
11 + [CATTTATG] 808 (86.11)
11 - [CATAAATG] 808 (86.11)
14 + [CATGAATT] 492 (89.21)
14 - [AATTCATG] 492 (89.21)
15 + [CATTTATG] 604 (86.11)
15 + .CATGCATT. 1464 (95.21)
15 + [AATGCATC] 1765 (85.75)
15 - [GATGCATT] 1765 (85.75)
15 - .AATGCATG. 1464 (95.21)
15 - [CATAAATG] 604 (86.11)
16 + [AATGAATG] 761 (89.21)
16 + .TATGCATG. 840 (92.82)
16 - .CATGCATA. 840 (92.82)
16 - [CATTCATT] 761 (89.21)
17 + [CATGAATT] 273 (89.21)
17 + [TATGAATG] 384 (86.82)
17 - [CATTCATA] 384 (86.82)
17 - [AATTCATG] 273 (89.21)
19 + [CATTCATT] 218 (89.21)
19 + [CATTCATT] 222 (89.21)
19 + [CATACATT] 436 (87.32)
19 - [AATGTATG] 436 (87.32)
19 - [AATGAATG] 222 (89.21)
19 - [AATGAATG] 218 (89.21)
21 + [CATTCATT] 17 (89.21)
21 - [AATGAATG] 17 (89.21)
23 + [CATTTATG] 1200 (86.11)
23 + .AATGCATT. 1422 (90.43)
23 + [AATGCATC] 1547 (85.75)
23 - [GATGCATT] 1547 (85.75)
23 - .AATGCATT. 1422 (90.43)
23 - [CATAAATG] 1200 (86.11)
24 + [AATACATG] 292 (87.32)
24 - [CATGTATT] 292 (87.32)
25 + [AATCCATG] 932 (85.67)
25 - [CATGGATT] 932 (85.67)
27 + [CATTCATT] 177 (89.21)
27 + [CATCCATT] 971 (85.67)
27 + [CATTCATT] 1417 (89.21)
27 - [AATGAATG] 1417 (89.21)
27 - [AATGGATG] 971 (85.67)
27 - [AATGAATG] 177 (89.21)
28 + [TATGCATT] 422 (88.04)
28 + [TATGCATT] 1483 (88.04)
28 - [AATGCATA] 1483 (88.04)
28 - [AATGCATA] 422 (88.04)
29 + [CAAGCATG] 672 (88.53)
29 + [AATGCATA] 1436 (88.04)
29 - [TATGCATT] 1436 (88.04)
29 - [CATGCTTG] 672 (88.53)
31 + [TATGCATT] 705 (88.04)
31 - [AATGCATA] 705 (88.04)
32 + .CATGAATG. 8 (94.00)
32 + .CATGCATG. 373 (100.00)
32 + [TATTCATG] 484 (86.82)
32 + [CAAGCATG] 545 (88.53)
32 + [CATTCATT] 1466 (89.21)
32 + .CATGCATT. 1651 (95.21)
32 - .AATGCATG. 1651 (95.21)
32 - [AATGAATG] 1466 (89.21)
32 - [CATGCTTG] 545 (88.53)
32 - [CATGAATA] 484 (86.82)
32 - .CATGCATG. 373 (100.00)
32 - .CATTCATG. 8 (94.00)
33 + [AATGAATG] 397 (89.21)
33 + [TATGCATT] 1454 (88.04)
33 + [AATTCATG] 1515 (89.21)
33 + [TATGCATT] 1597 (88.04)
33 + [TATGAATG] 1687 (86.82)
33 - [CATTCATA] 1687 (86.82)
33 - [AATGCATA] 1597 (88.04)
33 - [CATGAATT] 1515 (89.21)
33 - [AATGCATA] 1454 (88.04)
33 - [CATTCATT] 397 (89.21)
34 + [AATGCATA] 671 (88.04)
34 + .AATGCATT. 1380 (90.43)
34 - .AATGCATT. 1380 (90.43)
34 - [TATGCATT] 671 (88.04)
35 + .AATGCATG. 1020 (95.21)
35 - .CATGCATT. 1020 (95.21)
36 + .AATGCATT. 660 (90.43)
36 - .AATGCATT. 660 (90.43)
37 + [AATGTATG] 979 (87.32)
37 + [CATTTATG] 1198 (86.11)
37 + .CATGCATT. 1911 (95.21)
37 - .AATGCATG. 1911 (95.21)
37 - [CATAAATG] 1198 (86.11)
37 - [CATACATT] 979 (87.32)
39 + [CATGAATT] 617 (89.21)
39 + [CATTCATT] 1234 (89.21)
39 - [AATGAATG] 1234 (89.21)
39 - [AATTCATG] 617 (89.21)
41 + [CATTCATT] 322 (89.21)
41 - [AATGAATG] 322 (89.21)
42 + .CATGCATT. 660 (95.21)
42 + [CTTGCATG] 1144 (88.91)
42 + [CATGTATT] 1358 (87.32)
42 - [AATACATG] 1358 (87.32)
42 - [CATGCAAG] 1144 (88.91)
42 - .AATGCATG. 660 (95.21)
43 + [AATGAATG] 301 (89.21)
43 + .AATGCATT. 575 (90.43)
43 - .AATGCATT. 575 (90.43)
43 - [CATTCATT] 301 (89.21)
44 + [CATGAATT] 252 (89.21)
44 + .CATGCATT. 881 (95.21)
44 + [CATACATT] 1141 (87.32)
44 - [AATGTATG] 1141 (87.32)
44 - .AATGCATG. 881 (95.21)
44 - [AATTCATG] 252 (89.21)
46 + [CATACATT] 55 (87.32)
46 + .AATGCATT. 978 (90.43)
46 - .AATGCATT. 978 (90.43)
46 - [AATGTATG] 55 (87.32)
47 + .AATGCATG. 1552 (95.21)
47 - .CATGCATT. 1552 (95.21)
48 + [CATTTATG] 419 (86.11)
48 + [CATAAATG] 953 (86.11)
48 + [CATAAATG] 1343 (86.11)
48 - [CATTTATG] 1343 (86.11)
48 - [CATTTATG] 953 (86.11)
48 - [CATAAATG] 419 (86.11)
49 + [CATTCATT] 476 (89.21)
49 + .TATGCATG. 556 (92.82)
49 + .AATGCATT. 1529 (90.43)
49 + [AATGCATC] 1656 (85.75)
49 - [GATGCATT] 1656 (85.75)
49 - .AATGCATT. 1529 (90.43)
49 - .CATGCATA. 556 (92.82)
49 - [AATGAATG] 476 (89.21)
50 + [CATGCTTG] 725 (88.53)
50 + [AATGAATG] 1167 (89.21)
50 - [CATTCATT] 1167 (89.21)
50 - [CAAGCATG] 725 (88.53)
51 + [CATGAATA] 44 (86.82)
51 + .CATGCATG. 220 (100.00)
51 + .TATGCATG. 302 (92.82)
51 + [AATACATG] 1022 (87.32)
51 + [CATTCATT] 1197 (89.21)
51 - [AATGAATG] 1197 (89.21)
51 - [CATGTATT] 1022 (87.32)
51 - .CATGCATA. 302 (92.82)
51 - .CATGCATG. 220 (100.00)
51 - [TATTCATG] 44 (86.82)
52 + .CATGTATG. 457 (92.11)
52 + [CATGGATT] 1502 (85.67)
52 + [CATACATT] 1752 (87.32)
52 - [AATGTATG] 1752 (87.32)
52 - [AATCCATG] 1502 (85.67)
52 - .CATACATG. 457 (92.11)
53 + [CATGAATT] 1499 (89.21)
53 - [AATTCATG] 1499 (89.21)
54 + .AATGCATT. 228 (90.43)
54 + [CATGAATA] 480 (86.82)
54 + [TATTCATG] 1581 (86.82)
54 - [CATGAATA] 1581 (86.82)
54 - [TATTCATG] 480 (86.82)
54 - .AATGCATT. 228 (90.43)
55 + [CTTGCATG] 108 (88.91)
55 + [AATGCATA] 189 (88.04)
55 + [TATGCATT] 955 (88.04)
55 - [AATGCATA] 955 (88.04)
55 - [TATGCATT] 189 (88.04)
55 - [CATGCAAG] 108 (88.91)
56 + [AATGAATG] 1210 (89.21)
56 + [AATGAATG] 1214 (89.21)
56 - [CATTCATT] 1214 (89.21)
56 - [CATTCATT] 1210 (89.21)
57 + .AATGCATT. 1386 (90.43)
57 + [AATTCATG] 1451 (89.21)
57 + .CATGCATT. 1551 (95.21)
57 + [CATGAATA] 1630 (86.82)
57 - [TATTCATG] 1630 (86.82)
57 - .AATGCATG. 1551 (95.21)
57 - [CATGAATT] 1451 (89.21)
57 - .AATGCATT. 1386 (90.43)
58 + [AATGCATA] 50 (88.04)
58 + [CATGAATA] 662 (86.82)
58 + .AATGCATT. 1936 (90.43)
58 - .AATGCATT. 1936 (90.43)
58 - [TATTCATG] 662 (86.82)
58 - [TATGCATT] 50 (88.04)
59 + [TATGCATT] 577 (88.04)
59 + [TATTCATG] 666 (86.82)
59 - [CATGAATA] 666 (86.82)
59 - [AATGCATA] 577 (88.04)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 114 | 351 | 38 | 65 | | | | 36 | 28 | 0 | 4 |
2 | | 501 | 19 | 11 | 37 | | | | 68 | 0 | 0 | 0 |
3 | | 34 | 14 | 16 | 504 | | | | 0 | 0 | 0 | 68 |
4 | | 59 | 40 | 377 | 92 | | | | 1 | 2 | 64 | 1 |
5 | | 92 | 377 | 40 | 59 | | | | 1 | 64 | 2 | 1 |
6 | | 504 | 16 | 14 | 34 | | | | 68 | 0 | 0 | 0 |
7 | | 37 | 11 | 19 | 501 | | | | 0 | 0 | 0 | 68 |
8 | | 65 | 38 | 351 | 114 | | | | 4 | 0 | 28 | 36 |
TAATGCATTA
TAATGCATTA
2 redundant motifs found:
TCATGCATGA - AATGCATT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .CAATGCATTA. 1102 (91.68)
1 + [TAATGAATAA] 1343 (88.63)
1 - [TTATTCATTA] 1343 (88.63)
1 - .TAATGCATTG. 1102 (91.68)
2 + [AAATGTATTA] 113 (89.45)
2 + [TAATGCATAC] 1244 (85.68)
2 - [GTATGCATTA] 1244 (85.68)
2 - [TAATACATTT] 113 (89.45)
3 + [TTATGCATTT] 20 (88.30)
3 - [AAATGCATAA] 20 (88.30)
5 + [TAATTAATTT] 260 (86.16)
5 - [AAATTAATTA] 260 (86.16)
6 + .TAATGCATTA. 1918 (100.00)
6 - .TAATGCATTA. 1918 (100.00)
7 + .TAATGAATTA. 755 (95.50)
7 - .TAATTCATTA. 755 (95.50)
8 + [AAATGCATTG] 1275 (86.84)
8 - [CAATGCATTT] 1275 (86.84)
9 + .AAATGCATTT. 1095 (90.33)
9 - .AAATGCATTT. 1095 (90.33)
10 + [AAATGCATGA] 1138 (86.56)
10 - [TCATGCATTT] 1138 (86.56)
11 + [AAATTCATTT] 1376 (85.83)
11 - [AAATGAATTT] 1376 (85.83)
12 + [TAATACATCA] 222 (85.21)
12 + [CAATGAATTA] 457 (87.17)
12 - [TAATTCATTG] 457 (87.17)
12 - [TGATGTATTA] 222 (85.21)
13 + [AAATACATTA] 196 (89.45)
13 - [TAATGTATTT] 196 (89.45)
14 + [AAATTCATTT] 460 (85.83)
14 - [AAATGAATTT] 460 (85.83)
15 + [AAATGCAATA] 1199 (86.87)
15 + [TCATGCATTT] 1463 (86.56)
15 + .TAATGCATCA. 1764 (90.93)
15 - .TGATGCATTA. 1764 (90.93)
15 - [AAATGCATGA] 1463 (86.56)
15 - [TATTGCATTT] 1199 (86.87)
17 + [TAATACATTC] 480 (86.83)
17 - [GAATGTATTA] 480 (86.83)
18 + [TAATTAATTT] 1032 (86.16)
18 - [AAATTAATTA] 1032 (86.16)
19 + [TAATGAATTG] 882 (87.17)
19 - [CAATTCATTA] 882 (87.17)
23 + [AAATGCATTG] 1421 (86.84)
23 - [CAATGCATTT] 1421 (86.84)
24 + [TAATTAATTT] 271 (86.16)
24 + [TTATGTATTA] 603 (87.42)
24 - [TAATACATAA] 603 (87.42)
24 - [AAATTAATTA] 271 (86.16)
28 + [TTATGCATTT] 421 (88.30)
28 + [TAATTAATTT] 710 (86.16)
28 - [AAATTAATTA] 710 (86.16)
28 - [AAATGCATAA] 421 (88.30)
32 + [TCATGCATTT] 1650 (86.56)
32 - [AAATGCATGA] 1650 (86.56)
33 + [GTATGCATTA] 1453 (85.68)
33 + [GAATGAATTA] 1690 (88.04)
33 - [TAATTCATTC] 1690 (88.04)
33 - [TAATGCATAC] 1453 (85.68)
34 + [TAATGCATAT] 670 (88.30)
34 + .TAATGCATTG. 1379 (91.68)
34 - .CAATGCATTA. 1379 (91.68)
34 - [ATATGCATTA] 670 (88.30)
35 + [AAATGCATGA] 1019 (86.56)
35 - [TCATGCATTT] 1019 (86.56)
36 + .AAATGCATTT. 659 (90.33)
36 - .AAATGCATTT. 659 (90.33)
39 + [AAATGAATTT] 1456 (85.83)
39 - [AAATTCATTT] 1456 (85.83)
42 + [TCATGCATTT] 659 (86.56)
42 - [AAATGCATGA] 659 (86.56)
43 + .GAATGCATTA. 574 (92.55)
43 - .TAATGCATTC. 574 (92.55)
44 + [TCATGCATTT] 880 (86.56)
44 - [AAATGCATGA] 880 (86.56)
46 + [TAATAGATTA] 736 (85.60)
46 + .AAATGCATTT. 977 (90.33)
46 - .AAATGCATTT. 977 (90.33)
46 - [TAATCTATTA] 736 (85.60)
47 + [AAATGCATGA] 1551 (86.56)
47 - [TCATGCATTT] 1551 (86.56)
48 + [AAATGAATTT] 854 (85.83)
48 - [AAATTCATTT] 854 (85.83)
49 + [AAATGCATTG] 1528 (86.84)
49 - [CAATGCATTT] 1528 (86.84)
50 + [TAATGTATTT] 1220 (89.45)
50 - [AAATACATTA] 1220 (89.45)
54 + .AAATGCATTT. 227 (90.33)
54 + [AAATGAATTT] 263 (85.83)
54 - [AAATTCATTT] 263 (85.83)
54 - .AAATGCATTT. 227 (90.33)
55 + .TAATGCATAA. 188 (93.14)
55 + [TAATGATTTA] 626 (86.85)
55 - [TAAATCATTA] 626 (86.85)
55 - .TTATGCATTA. 188 (93.14)
57 + .CAATGCATTA. 1385 (91.68)
57 - .TAATGCATTG. 1385 (91.68)
58 + .TAATCCATTA. 1652 (91.32)
58 + .TAATGCATTA. 1935 (100.00)
58 - .TAATGCATTA. 1935 (100.00)
58 - .TAATGGATTA. 1652 (91.32)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 188 | 79 | 98 | 625 | | | | 8 | 3 | 1 | 16 |
2 | | 705 | 83 | 74 | 128 | | | | 26 | 0 | 1 | 1 |
3 | | 795 | 48 | 46 | 101 | | | | 28 | 0 | 0 | 0 |
4 | | 96 | 36 | 34 | 824 | | | | 0 | 0 | 0 | 28 |
5 | | 142 | 68 | 588 | 192 | | | | 0 | 1 | 26 | 1 |
6 | | 192 | 588 | 68 | 142 | | | | 1 | 26 | 1 | 0 |
7 | | 824 | 34 | 36 | 96 | | | | 28 | 0 | 0 | 0 |
8 | | 101 | 46 | 48 | 795 | | | | 0 | 0 | 0 | 28 |
9 | | 128 | 74 | 83 | 705 | | | | 1 | 1 | 0 | 26 |
10 | | 625 | 98 | 79 | 188 | | | | 16 | 1 | 3 | 8 |
ACATGCATGT
ACATGCATGT
2 redundant motifs found:
TCATGCATGA - CATGCATG -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [CCATGCATTT] 1266 (87.47)
1 - [AAATGCATGG] 1266 (87.47)
2 + [AAATAAATTT] 520 (85.02)
2 - [AAATTTATTT] 520 (85.02)
3 + [AAATTCATGA] 696 (85.12)
3 - [TCATGAATTT] 696 (85.12)
5 + [ACATGAATCT] 570 (88.93)
5 + [ACAAACATGT] 631 (86.95)
5 + [AAATTCATAT] 1012 (88.15)
5 + [AAATTCATAT] 1243 (88.15)
5 - [ATATGAATTT] 1243 (88.15)
5 - [ATATGAATTT] 1012 (88.15)
5 - [ACATGTTTGT] 631 (86.95)
5 - [AGATTCATGT] 570 (88.93)
6 + [ACATTCAATT] 1339 (85.35)
6 - [AATTGAATGT] 1339 (85.35)
7 + [AAATAAATTT] 175 (85.02)
7 + [ACATGCAATT] 1307 (89.65)
7 - [AATTGCATGT] 1307 (89.65)
7 - [AAATTTATTT] 175 (85.02)
8 + .AAATGCATCT. 1400 (90.54)
8 - .AGATGCATTT. 1400 (90.54)
9 + .AGATGCATTT. 594 (90.54)
9 + .AAATGCATTT. 1095 (94.62)
9 - .AAATGCATTT. 1095 (94.62)
9 - .AAATGCATCT. 594 (90.54)
10 + [ACTTGCATCT] 227 (85.56)
10 + [AAATGCATGA] 1138 (89.41)
10 - [TCATGCATTT] 1138 (89.41)
10 - [AGATGCAAGT] 227 (85.56)
11 + [AAATTTATTT] 420 (85.02)
11 + [AAATTCTTGT] 877 (85.28)
11 + .AAATTCATTT. 1376 (90.33)
11 - .AAATGAATTT. 1376 (90.33)
11 - [ACAAGAATTT] 877 (85.28)
11 - [AAATAAATTT] 420 (85.02)
12 + [ACATCCATCT] 644 (85.64)
12 + [ACATCCATCT] 1310 (85.64)
12 - [AGATGGATGT] 1310 (85.64)
12 - [AGATGGATGT] 644 (85.64)
14 + .AAATTCATTT. 460 (90.33)
14 + [ACATTTATTT] 602 (87.71)
14 + [AAATTAATTT] 760 (86.04)
14 + [AAATAAATGT] 800 (87.71)
14 + [ACATTAATTT] 847 (88.72)
14 - [AAATTAATGT] 847 (88.72)
14 - [ACATTTATTT] 800 (87.71)
14 - [AAATTAATTT] 760 (86.04)
14 - [AAATAAATGT] 602 (87.71)
14 - .AAATGAATTT. 460 (90.33)
15 + [TCATGCATTT] 1463 (89.41)
15 - [AAATGCATGA] 1463 (89.41)
16 + [ACATACATAT] 293 (89.82)
16 + [TTATGCATGT] 839 (87.23)
16 + [ATATGAATTT] 939 (88.15)
16 + [AAATAAATGT] 1212 (87.71)
16 + [AAATTGATGT] 1631 (85.43)
16 - [ACATCAATTT] 1631 (85.43)
16 - [ACATTTATTT] 1212 (87.71)
16 - [AAATTCATAT] 939 (88.15)
16 - [ACATGCATAA] 839 (87.23)
16 - [ATATGTATGT] 293 (89.82)
17 + [AAATACATAT] 301 (87.13)
17 + [ATATGTATTT] 871 (87.13)
17 - [AAATACATAT] 871 (87.13)
17 - [ATATGTATTT] 301 (87.13)
18 + [AAATAAATTT] 44 (85.02)
18 - [AAATTTATTT] 44 (85.02)
19 + .ACATACATTT. 435 (92.00)
19 - .AAATGTATGT. 435 (92.00)
21 + .ACATTCATTT. 16 (93.02)
21 + [ACATCAATTT] 1912 (85.43)
21 + [AAATTTATTT] 1929 (85.02)
21 - [AAATAAATTT] 1929 (85.02)
21 - [AAATTGATGT] 1912 (85.43)
21 - .AAATGAATGT. 16 (93.02)
23 + [ACATTCATCT] 650 (88.93)
23 + .ACATTTATGT. 1199 (90.39)
23 + .AAATGCATCT. 1546 (90.54)
23 - .AGATGCATTT. 1546 (90.54)
23 - .ACATAAATGT. 1199 (90.39)
23 - [AGATGAATGT] 650 (88.93)
25 + [AAATACATTT] 391 (89.31)
25 - [AAATGTATTT] 391 (89.31)
26 + [AAATTTATTT] 961 (85.02)
26 - [AAATAAATTT] 961 (85.02)
29 + [ACATTTATAT] 1365 (85.52)
29 + [ATATACATTT] 1753 (87.13)
29 - [AAATGTATAT] 1753 (87.13)
29 - [ATATAAATGT] 1365 (85.52)
32 + .ACATGCATGG. 372 (90.15)
32 + [AGATTCATTT] 671 (86.25)
32 + [TCATGCATTT] 1650 (89.41)
32 - [AAATGCATGA] 1650 (89.41)
32 - [AAATGAATCT] 671 (86.25)
32 - .CCATGCATGT. 372 (90.15)
33 + [AAATGAATGA] 396 (85.12)
33 + [ACATGATTTT] 1138 (85.28)
33 + [AAATTCATGA] 1514 (85.12)
33 - [TCATGAATTT] 1514 (85.12)
33 - [AAAATCATGT] 1138 (85.28)
33 - [TCATTCATTT] 396 (85.12)
34 + [ACATTCAATT] 231 (85.35)
34 + [ACATAAATTT] 1059 (87.71)
34 - [AAATTTATGT] 1059 (87.71)
34 - [AATTGAATGT] 231 (85.35)
35 + [AAATGCATGA] 1019 (89.41)
35 - [TCATGCATTT] 1019 (89.41)
36 + [ACATTCAAGT] 618 (88.04)
36 + .AAATGCATTT. 659 (94.62)
36 - .AAATGCATTT. 659 (94.62)
36 - [ACTTGAATGT] 618 (88.04)
37 + [AATTGCATTT] 316 (86.96)
37 + [CCATGCATTT] 1910 (87.47)
37 - [AAATGCATGG] 1910 (87.47)
37 - [AAATGCAATT] 316 (86.96)
39 + [ACAAGAATTT] 298 (85.28)
39 + .ACATGAATTT. 616 (93.02)
39 + .AAATGAATTT. 1456 (90.33)
39 - .AAATTCATTT. 1456 (90.33)
39 - .AAATTCATGT. 616 (93.02)
39 - [AAATTCTTGT] 298 (85.28)
40 + [AAATACATTT] 295 (89.31)
40 - [AAATGTATTT] 295 (89.31)
42 + [TCATGCATTT] 659 (89.41)
42 - [AAATGCATGA] 659 (89.41)
43 + [AAATGAATGA] 300 (85.12)
43 + [AAATTAATTT] 815 (86.04)
43 + [AATTTCATGT] 1477 (85.35)
43 - [ACATGAAATT] 1477 (85.35)
43 - [AAATTAATTT] 815 (86.04)
43 - [TCATTCATTT] 300 (85.12)
44 + .ACATGAATTT. 251 (93.02)
44 + [TCATGCATTT] 880 (89.41)
44 - [AAATGCATGA] 880 (89.41)
44 - .AAATTCATGT. 251 (93.02)
45 + [ACAAGCATTT] 618 (89.58)
45 - [AAATGCTTGT] 618 (89.58)
46 + .ACATACATTT. 54 (92.00)
46 + [AAATACATAT] 393 (87.13)
46 + [ACATATATTT] 397 (86.69)
46 + [ACATACTTGT] 711 (86.95)
46 + .AAATGCATTT. 977 (94.62)
46 - .AAATGCATTT. 977 (94.62)
46 - [ACAAGTATGT] 711 (86.95)
46 - [AAATATATGT] 397 (86.69)
46 - [ATATGTATTT] 393 (87.13)
46 - .AAATGTATGT. 54 (92.00)
47 + [AAATTTATTT] 931 (85.02)
47 + [AAATGAATCT] 1206 (86.25)
47 + [AAATGCATGA] 1551 (89.41)
47 - [TCATGCATTT] 1551 (89.41)
47 - [AGATTCATTT] 1206 (86.25)
47 - [AAATAAATTT] 931 (85.02)
48 + .AAATGAATTT. 854 (90.33)
48 + [AAATACATCT] 1322 (85.23)
48 + [AAATTCATAT] 1952 (88.15)
48 - [ATATGAATTT] 1952 (88.15)
48 - [AGATGTATTT] 1322 (85.23)
48 - .AAATTCATTT. 854 (90.33)
49 + [ATATGCATGG] 555 (85.28)
49 + [ACTTTCATTT] 892 (85.35)
49 + .AAATGCATCT. 1655 (90.54)
49 - .AGATGCATTT. 1655 (90.54)
49 - [AAATGAAAGT] 892 (85.35)
49 - [CCATGCATAT] 555 (85.28)
50 + [ACATAAATTT] 1147 (87.71)
50 - [AAATTTATGT] 1147 (87.71)
51 + .ACATGCATGT. 219 (100.00)
51 + [CTATGCATGT] 301 (85.28)
51 + [ACTTGCATAT] 312 (87.46)
51 + .AAATACATGT. 1021 (92.00)
51 + [TCATTCATTT] 1196 (85.12)
51 - [AAATGAATGA] 1196 (85.12)
51 - .ACATGTATTT. 1021 (92.00)
51 - [ATATGCAAGT] 312 (87.46)
51 - [ACATGCATAG] 301 (85.28)
51 - .ACATGCATGT. 219 (100.00)
52 + [AAATGTATTT] 155 (89.31)
52 + [AAATACATTT] 395 (89.31)
52 + [ACATAAATTT] 718 (87.71)
52 + [ACAAGCATTT] 1609 (89.58)
52 - [AAATGCTTGT] 1609 (89.58)
52 - [AAATTTATGT] 718 (87.71)
52 - [AAATGTATTT] 395 (89.31)
52 - [AAATACATTT] 155 (89.31)
53 + [ATATAAATGT] 1011 (85.52)
53 - [ACATTTATAT] 1011 (85.52)
54 + .AAATGCATTT. 227 (94.62)
54 + .AAATGAATTT. 263 (90.33)
54 + [ACATTCAATT] 295 (85.35)
54 - [AATTGAATGT] 295 (85.35)
54 - .AAATTCATTT. 263 (90.33)
54 - .AAATGCATTT. 227 (94.62)
56 + [ACAATCATTT] 215 (85.28)
56 - [AAATGATTGT] 215 (85.28)
57 + [CCATGCATTT] 1550 (87.47)
57 - [AAATGCATGG] 1550 (87.47)
58 + [ACATTCAATT] 1317 (85.35)
58 + [ACTTTCATTT] 1617 (85.35)
58 + [ATATGTATGT] 1729 (89.82)
58 - [ACATACATAT] 1729 (89.82)
58 - [AAATGAAAGT] 1617 (85.35)
58 - [AATTGAATGT] 1317 (85.35)
59 + [ACATACATAT] 66 (89.82)
59 + [AAATACATTT] 739 (89.31)
59 - [AAATGTATTT] 739 (89.31)
59 - [ATATGTATGT] 66 (89.82)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 559 | 39 | 28 | 66 | | | | 43 | 1 | 0 | 0 |
2 | | 175 | 362 | 58 | 97 | | | | 28 | 12 | 4 | 0 |
3 | | 580 | 20 | 19 | 73 | | | | 44 | 0 | 0 | 0 |
4 | | 70 | 35 | 20 | 567 | | | | 0 | 0 | 0 | 44 |
5 | | 98 | 53 | 412 | 129 | | | | 4 | 0 | 31 | 9 |
6 | | 129 | 412 | 53 | 98 | | | | 9 | 31 | 0 | 4 |
7 | | 567 | 20 | 35 | 70 | | | | 44 | 0 | 0 | 0 |
8 | | 73 | 19 | 20 | 580 | | | | 0 | 0 | 0 | 44 |
9 | | 97 | 58 | 362 | 175 | | | | 0 | 4 | 12 | 28 |
10 | | 66 | 28 | 39 | 559 | | | | 0 | 0 | 1 | 43 |