Your Weeder Web Results
NEW: Starting a large job on file /tmp/motif_master/12083_WEEDER/mec3_t69_u2_2_19.fa
Organism code: CE
Processing both strands
/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/12083_WEEDER/mec3_t69_u2_2_19.fa CE large S
Searching for motifs of length 6 with 1 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12083_WEEDER/mec3_t69_u2_2_19.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) ATTTTT 1.71
2) TAATTA 0.67
3) ATTAAT 0.65
4) ATGCAT 0.62
5) AAGCTT 0.54
6) TTATAA 0.50
7) GTAAGT 0.50
8) AATATT 0.48
9) TTTTTT 0.46
10) TTGCAA 0.41
Elapsed time : 0 min. 8 sec.
Searching for motifs of length 8 with 2 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12083_WEEDER/mec3_t69_u2_2_19.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) AATGCATT 1.01
2) CATTAATG 0.89
3) TTCATGAA 0.85
4) ATACGTAT 0.85
5) ATCTAGAT 0.83
6) GATATATC 0.82
7) TTGTACAA 0.79
8) ATAGCTAT 0.78
9) CTAATTAG 0.77
10) ATAATTAT 0.76
Elapsed time : 2 min. 43 sec.
Searching for motifs of length 10 with 3 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12083_WEEDER/mec3_t69_u2_2_19.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) TGATATATCA 0.79
2) AATACGTATT 0.75
3) ATCTATAGAT 0.71
4) TCGGATCCGA 0.67
5) AGATTAATCT 0.65
6) AAAGGCCTTT 0.64
7) TCTAATTAGA 0.63
8) TAAATATTTA 0.63
9) TAATGCATTA 0.62
10) TAGGATCCTA 0.59
Elapsed time : -22 min. -37 sec.
Searching for motifs of length 12 with 4 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12083_WEEDER/mec3_t69_u2_2_19.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) AAACACAAGAAT 1.69
2) GAAACAGAAGAA 1.66
3) AGGATAAGATGA 1.64
4) GATAGAGAGGGA 1.63
5) AACTAAAGCAAA 1.62
6) AGAGTACAGAGA 1.61
7) AAACAGTACAAA 1.60
8) AATGAGAAGAAG 1.59
9) AATAACAGAGAA 1.58
10) AAGAATGATAAA 1.58
Elapsed time : -27 min. -22 sec.