Your Weeder Web Results
NEW: Starting a large job on file /tmp/motif_master/12047_WEEDER/mec3_top20o_u2t_3_19.fa
Organism code: CE
Processing both strands
/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/12047_WEEDER/mec3_top20o_u2t_3_19.fa CE large S
Searching for motifs of length 6 with 1 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12047_WEEDER/mec3_top20o_u2t_3_19.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) GCGAGA 2.06
2) AGCGAG 1.74
3) GAGACC 1.72
4) CGCCTT 1.71
5) GAGTGT 1.66
6) GCGCCT 1.66
7) GGCGAG 1.64
8) TGCGCC 1.59
9) TACGGT 1.57
10) AGGGCG 1.56
Elapsed time : 0 min. 0 sec.
Searching for motifs of length 8 with 2 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12047_WEEDER/mec3_top20o_u2t_3_19.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) GCGAGCAC 2.55
2) GCGAGACC 2.55
3) GGCGAGAC 2.52
4) CTACGGTC 2.35
5) GCGAACAC 2.35
6) TACGCGTA 2.34
7) GCGTAACC 2.31
8) GGCGGCAC 2.28
9) AGCGAGCA 2.27
10) GCGCCTTT 2.24
Elapsed time : 0 min. 3 sec.
Searching for motifs of length 10 with 3 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12047_WEEDER/mec3_top20o_u2t_3_19.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) GCGTAACCGT 3.14
2) GGCGAGACCC 2.92
3) CGAAAGGGCG 2.91
4) GAGCGAAAGG 2.91
5) AGCGAGCACA 2.89
6) CGTAACCGTA 2.86
7) GCGAAAGGGC 2.77
8) GCGAACACTC 2.74
9) GTCTCGCCAC 2.74
10) AGGGCGGCAC 2.71
Elapsed time : 1 min. 14 sec.
Searching for motifs of length 12 with 4 mutations.....
(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12047_WEEDER/mec3_top20o_u2t_3_19.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) AGCGAAAGGGCG 4.86
2) GAGCGAAAGGGC 4.81
3) GGGTCTCGCCAC 4.38
4) AGGAGCGAAAGG 4.31
5) CGCGTAACCGTA 4.31
6) ACGCGTAACCGT 4.12
7) GGGTCTCGCAAC 4.12
8) GCGGCGAGACCC 4.11
9) CGAAAGGGCGGC 4.07
10) GGAGCGAAAGGG 4.05
Elapsed time : 10 min. 39 sec.
Your sequences:
Sequence 1 : >ID1926163_Y48G8AL.8a_u2k_truncated
Sequence 2 : >ID1931660_C06A8.3_u2k_truncated
Sequence 3 : >ID1939832_Y45F10D.12_u2k_truncated
Sequence 4 : >ID1948027_C03A3.3_u2k_truncated
Sequence 5 : >ID1952053_cr01.sctg11.wum.158.1_u2k_tr
Sequence 6 : >ID1966062_cr01.sctg412.wum.3.1_u2k_tru
Sequence 7 : >ID1971250_cr01.sctg6.wum.394.1_u2k_tru
Sequence 8 : >ID1975249_cr01.sctg9.wum.412.1_u2k_tru
Sequence 9 : >ID1982240_CBG08510_u2k_truncated
Sequence 10 : >ID1985761_CBG12955_u2k_truncated
Sequence 11 : >ID1988981_CBG17385_u2k_truncated
Sequence 12 : >ID1992898_CBG22372_u2k_truncated
**** MY ADVICE ****
*** Interesting motifs (highest-ranking) seem to be :
GCGAGA
TCTCGC
5 redundant motifs found:
GGCGAGAC - GCGAGACC - GGCGAG - GAGACC - AGCGAG -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .GCGAAA. 16 (95.79)
1 + [GAAAAA] 18 (87.57)
1 + .GCGAGA. 76 (100.00)
1 + [GAAAAA] 205 (87.57)
1 - [GAAAAA] 199 (87.57)
1 - [GAGTGA] 158 (89.12)
1 - [GAAAAA] 154 (87.57)
1 - [AAGAGA] 150 (88.97)
1 - .GAGAAA. 148 (94.52)
1 - [GAAAAA] 146 (87.57)
1 - .GCGAAA. 125 (95.79)
1 - [GCAAGC] 106 (86.14)
1 - .GCGAAA. 102 (95.79)
1 - .GGGAGA. 48 (95.57)
1 - [GAGAGG] 46 (89.12)
2 + [GAAAAA] 7 (87.57)
2 + [GCGAAC] 57 (88.88)
2 + [GGGAGG] 113 (85.95)
2 + .GCGAAA. 120 (95.79)
2 + .GAGAGA. 136 (98.74)
2 + .GAGAGA. 138 (98.74)
2 + .GAGAGA. 140 (98.74)
2 + [GAGAGG] 154 (89.12)
2 + .GAGGGA. 156 (91.83)
2 + .GGGAGA. 158 (95.57)
2 + .GAGAGA. 160 (98.74)
2 + .GAGAGA. 162 (98.74)
2 + .GAGAAA. 164 (94.52)
2 - .GAAAGA. 241 (91.78)
2 - .GAGGGA. 216 (91.83)
2 - [GAGACA] 90 (89.38)
2 - [GAGACA] 79 (89.38)
2 - .GAGAGA. 71 (98.74)
3 + [ACGAAA] 49 (86.02)
3 + [GAAAAA] 51 (87.57)
3 + .GAGGGA. 78 (91.83)
3 - [GCAAAA] 200 (88.83)
3 - [GAAAAA] 147 (87.57)
3 - [GCAAAA] 138 (88.83)
3 - [GAAAAA] 106 (87.57)
3 - .GCGAGA. 42 (100.00)
4 + [AAGAGA] 19 (88.97)
4 + .GCGAGA. 120 (100.00)
4 + .GAGAGA. 122 (98.74)
4 + [GGGACA] 142 (86.22)
4 + [ACGAAA] 332 (86.02)
4 + [GAAAAA] 334 (87.57)
4 + .GCGAGC. 340 (93.10)
4 + [GCGTAA] 362 (86.17)
4 - [GCGTAA] 358 (86.17)
4 - .GCGGGA. 307 (93.10)
4 - [GGGAGG] 305 (85.95)
4 - [GAGGAA] 303 (87.62)
4 - .GAAAGA. 300 (91.78)
4 - .GGGAGA. 247 (95.57)
4 - [GAGAAC] 245 (87.62)
5 + [GGGTGA] 66 (85.95)
5 + .GCGAGA. 120 (100.00)
5 + .GAGAGA. 122 (98.74)
5 + [GCAAAA] 218 (88.83)
5 + [ACGAAA] 332 (86.02)
5 + [GAAAAA] 334 (87.57)
5 + .GCGAGC. 340 (93.10)
5 + [GCGTAA] 362 (86.17)
5 - [GCGTAA] 358 (86.17)
5 - .GCGGGA. 307 (93.10)
5 - [GGGAGG] 305 (85.95)
5 - [GAGGAA] 303 (87.62)
5 - .GAAAGA. 300 (91.78)
5 - [GAAAAA] 201 (87.57)
5 - [ACGAAA] 183 (86.02)
6 + .GGGAAA. 79 (91.36)
6 + [GAAAAA] 186 (87.57)
6 - .GCAAGA. 201 (93.05)
6 - [GAAAAA] 197 (87.57)
6 - [GCAAAA] 160 (88.83)
6 - [GAAAAA] 146 (87.57)
6 - [GAAAAA] 136 (87.57)
6 - .GCGTGA. 129 (90.38)
6 - [GAAAAA] 115 (87.57)
6 - [AGGAGA] 94 (85.80)
6 - .GAGAGA. 92 (98.74)
6 - .GAGAGA. 90 (98.74)
6 - .GCGAGA. 43 (100.00)
7 + [AGGAGA] 41 (85.80)
7 + [GAGACA] 43 (89.38)
7 + .GCGAGA. 76 (100.00)
7 + [GAAAAA] 208 (87.57)
7 - [GAAAAA] 199 (87.57)
7 - [GAAAAA] 187 (87.57)
7 - [GAAAAA] 155 (87.57)
7 - .GGGAAA. 149 (91.36)
7 - [GAAAAA] 147 (87.57)
7 - .GCGAAA. 125 (95.79)
8 + [GCGAAC] 59 (88.88)
8 + .GCGAAA. 123 (95.79)
8 + [GAGACA] 139 (89.38)
8 - .GAGAGA. 92 (98.74)
8 - .GAGAGA. 83 (98.74)
8 - .GAGGGA. 34 (91.83)
8 - .GGGAGA. 32 (95.57)
8 - .GAGAAA. 30 (94.52)
9 + [GAAAAA] 6 (87.57)
9 + .GCGAGA. 77 (100.00)
9 + .GCGAGG. 86 (90.38)
9 + [GCGAAC] 91 (88.88)
9 - [GAAAAA] 189 (87.57)
9 - .GCGAAA. 180 (95.79)
9 - [AAGAGA] 152 (88.97)
9 - .GAGAAA. 150 (94.52)
9 - [GAAAAA] 148 (87.57)
9 - .GCGAGA. 120 (100.00)
10 + [GAAAAA] 7 (87.57)
10 + [GCGAAC] 59 (88.88)
10 + [GGGAGG] 116 (85.95)
10 + .GCGAAA. 123 (95.79)
10 + .GAGAGA. 139 (98.74)
10 + [GAGACA] 141 (89.38)
10 + .GCGACA. 175 (90.65)
10 - .ACGAGA. 94 (90.23)
10 - .GAGAGA. 92 (98.74)
10 - .GAGAGA. 83 (98.74)
10 - [AGGAGA] 71 (85.80)
11 + [ACGAAA] 18 (86.02)
11 + [GAAAAA] 20 (87.57)
11 + .GCGAGC. 26 (93.10)
11 + [GCGTAA] 48 (86.17)
11 - [GCGTAA] 44 (86.17)
12 + .GCAAGA. 76 (93.05)
12 + [AAGAGA] 78 (88.97)
12 + .GAGAGA. 80 (98.74)
12 + .GAGAAA. 82 (94.52)
12 - .GCAAGA. 200 (93.05)
12 - [GAAAAA] 196 (87.57)
12 - [GAAAAA] 158 (87.57)
12 - [GCAAAA] 149 (88.83)
12 - [GCAAAA] 138 (88.83)
12 - [GAAAAA] 115 (87.57)
12 - [GAAAAA] 105 (87.57)
12 - [AGGAGA] 94 (85.80)
12 - .GAGAGA. 92 (98.74)
12 - .GAGAGA. 90 (98.74)
12 - .GCGAGA. 43 (100.00)
12 - .GCGGGA. 32 (93.10)
12 - .GGGAGA. 30 (95.57)
12 - .GAGAGC. 28 (91.83)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 0 | 52 | 0 | | | | 1 | 0 | 67 | 0 |
2 | | 18 | 30 | 5 | 0 | | | | 31 | 30 | 7 | 0 |
3 | | 3 | 0 | 50 | 0 | | | | 6 | 0 | 62 | 0 |
4 | | 49 | 0 | 3 | 1 | | | | 60 | 0 | 7 | 1 |
5 | | 8 | 1 | 44 | 0 | | | | 15 | 1 | 52 | 0 |
6 | | 49 | 3 | 1 | 0 | | | | 63 | 4 | 1 | 0 |
GCGAGACC
GGTCTCGC
6 redundant motifs found:
GCGAGCAC - GGCGAGACCC - GCGTAACC - GGCGAGAC - GAGACC - GCGAGA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [GCGAAAAA] 16 (88.64)
1 + .GCGAGACC. 76 (100.00)
1 - [GAGTGAAA] 156 (86.15)
1 - [GAGAAAAA] 146 (86.05)
1 - [GCGAAATG] 123 (87.50)
1 - .GCGAAACC. 100 (95.89)
1 - [GGGAGAGG] 46 (88.11)
1 - [GAGAGGCA] 44 (85.91)
2 + [GCGAACAC] 57 (88.99)
2 + [GCGAAAGG] 120 (87.50)
2 + [GAGAGAGA] 136 (89.02)
2 + [GAGAGAGA] 138 (89.02)
2 + [GAGAGATA] 140 (89.02)
2 + [GGGAGAGA] 158 (88.11)
2 + [GAGAGAGA] 160 (89.02)
2 + .GAGAGAAA. 162 (90.17)
2 - [GAGAGATA] 69 (89.02)
3 - .GCGAGACC. 40 (100.00)
3 - [GCGCGCCC] 9 (88.84)
4 + .GCGAGAGA. 120 (91.61)
4 + .GAGAGATC. 122 (93.39)
4 + .GCGAGCAC. 340 (93.10)
4 + .GCGTAACC. 362 (91.86)
4 - .GGGAGAAC. 245 (93.63)
4 - [GAGAACCC] 243 (89.28)
5 + [GGGTGAAA] 66 (85.24)
5 + .GCGAGAGA. 120 (91.61)
5 + .GAGAGATC. 122 (93.39)
5 + .GCGAGCAC. 340 (93.10)
5 + .GCGTAACC. 362 (91.86)
5 - [GGGAACCC] 246 (88.37)
6 - .GCGTGAAC. 127 (93.10)
6 - [GAGAGAGA] 90 (89.02)
6 - .GAGAGAAG. 88 (90.17)
6 - .GCGAGACC. 41 (100.00)
7 + .GCGAGACC. 76 (100.00)
7 - [GGGAAAAA] 147 (85.14)
7 - [GCGAAATG] 123 (87.50)
7 - [TGGAGACC] 100 (89.10)
8 + [GCGAACAC] 59 (88.99)
8 + [GCGAAAGG] 123 (87.50)
8 - [GAGAGAGT] 90 (88.11)
8 - .GAGAGACG. 81 (93.04)
8 - [GGGAGAAA] 30 (89.26)
8 - [GAGAAAAT] 28 (85.14)
9 + .GCGAGACC. 77 (100.00)
9 + [GCGAGGCG] 86 (88.50)
9 - [GCGAAAAT] 178 (87.73)
9 - [GAGAAAAA] 148 (86.05)
9 - .GCGAGATT. 118 (90.70)
10 + [GCGAACAC] 59 (88.99)
10 + [GCGAAAGG] 123 (87.50)
10 + .GAGAGACA. 139 (93.04)
10 - [GAGAGAGT] 90 (88.11)
10 - .GAGAGACG. 81 (93.04)
10 - [AGGAGACC] 69 (89.10)
11 + .GCGAGCAC. 26 (93.10)
11 + .GCGTAACC. 48 (91.86)
12 + .GAGAGAAA. 80 (90.17)
12 + [GAGAAAAG] 82 (86.05)
12 - [GAGAGAGA] 90 (89.02)
12 - .GAGAGACT. 88 (92.13)
12 - .GCGAGACC. 41 (100.00)
12 - .GGGAGAGC. 28 (92.48)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 0 | 27 | 1 | | | | 0 | 0 | 28 | 0 |
2 | | 6 | 19 | 4 | 0 | | | | 9 | 17 | 2 | 0 |
3 | | 0 | 0 | 29 | 0 | | | | 0 | 0 | 28 | 0 |
4 | | 24 | 1 | 0 | 4 | | | | 24 | 0 | 0 | 4 |
5 | | 4 | 0 | 25 | 0 | | | | 4 | 0 | 24 | 0 |
6 | | 24 | 4 | 1 | 0 | | | | 25 | 3 | 0 | 0 |
7 | | 5 | 18 | 3 | 3 | | | | 8 | 14 | 3 | 3 |
8 | | 3 | 21 | 3 | 2 | | | | 5 | 18 | 3 | 2 |
GCGTAACCGT
ACGGTTACGC
4 redundant motifs found:
ACGCGTAACCGT - CGCGTAACCGTA - CGTAACCGTA - GCGTAACC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [GCGAGACCCA] 76 (86.33)
1 - .GCGCAAGCGA. 104 (92.45)
1 - .GCGAAACCGT. 98 (96.20)
3 - [GCGCACACTT] 55 (87.99)
4 + .GCGGCCCCGT. 53 (90.16)
4 + .GCGTAACCGT. 362 (100.00)
4 - .GCGTAATTGA. 354 (95.20)
4 - [GCGTCGACTT] 170 (87.64)
4 - [GTGTCCCCGA] 139 (86.74)
5 + [GCCTCGACGA] 13 (86.06)
5 + [GCCAAGTCGA] 227 (86.41)
5 + .GCGTAACCGT. 362 (100.00)
5 - .GCGTAATTGA. 354 (95.20)
5 - [GCGTCGACTT] 170 (87.64)
5 - [GTGCAGCCGT] 153 (88.67)
5 - .GCCTCATCGT. 19 (93.14)
6 - .GCGTGAACTT. 125 (90.74)
7 + .GCCTAAACTT. 172 (91.94)
8 - [GCCCACACGT] 110 (87.99)
9 + [GCAGAACCCT] 40 (89.11)
9 + [GCCTAAATTT] 172 (89.69)
9 - [GCGAAAATTT] 176 (88.84)
9 - [GCACACTCGA] 102 (86.41)
10 + [GCGACAATTT] 175 (85.90)
11 + .GCGTAACCGT. 48 (100.00)
11 - .GCGTAATTGA. 40 (95.20)
12 + [GCCAAATTTT] 142 (87.09)
12 - [GCGAGACCCA] 39 (86.33)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 0 | 14 | 0 | | | | 0 | 0 | 12 | 0 |
2 | | 0 | 13 | 0 | 1 | | | | 0 | 12 | 0 | 0 |
3 | | 1 | 2 | 11 | 0 | | | | 0 | 2 | 10 | 0 |
4 | | 1 | 2 | 2 | 9 | | | | 1 | 1 | 1 | 9 |
5 | | 11 | 2 | 1 | 0 | | | | 9 | 2 | 1 | 0 |
6 | | 12 | 1 | 1 | 0 | | | | 11 | 1 | 0 | 0 |
7 | | 2 | 7 | 1 | 4 | | | | 2 | 5 | 1 | 4 |
8 | | 0 | 11 | 0 | 3 | | | | 0 | 9 | 0 | 3 |
9 | | 0 | 1 | 11 | 2 | | | | 0 | 0 | 10 | 2 |
10 | | 4 | 0 | 0 | 10 | | | | 4 | 0 | 0 | 8 |
AGCGAAAGGGCG
CGCCCTTTCGCT
4 redundant motifs found:
CGAAAGGGCGGC - GAGCGAAAGGGC - GCGAAAGGGC - CGAAAGGGCG -
Best occurrences (match percentage):
Seq St oligo pos match
1 - [TAAAAAACGGCG] 181 (87.81)
1 - .AGTGAAAAAGAG. 151 (90.96)
1 - [TGAAAAAGAGAA] 149 (85.55)
1 - [AGAGAAAAAGGC] 143 (87.28)
1 - [AGAAAAAGGCCC] 141 (87.87)
1 - [AGCGAAACCGTA] 97 (87.19)
1 - [AGCGATGGGTCT] 79 (88.57)
2 + .AGCGAAAGGGCG. 119 (100.00)
2 + [AGAGAGAGAGAT] 135 (89.84)
2 + .AGAGAGAGATAG. 137 (91.06)
2 + .AGAGAGATAGAG. 139 (90.70)
2 + [AGAGATAGAGAT] 141 (88.67)
2 + [AGATAGAGATAG] 143 (85.93)
2 + [ATAGAGATAGAG] 145 (85.50)
2 + .AGAGATAGAGAG. 147 (91.38)
2 + [AGATAGAGAGGG] 149 (85.09)
2 + [ATAGAGAGGGAG] 151 (88.32)
2 + [AGAGAGGGAGAG] 153 (89.27)
2 + [AGAGGGAGAGAG] 155 (89.68)
2 + [AGAGAAATGACT] 163 (89.61)
2 - [AGAGAGATACAG] 66 (87.10)
2 - [AGAGATACAGTG] 64 (88.57)
3 + .AACGAAAAAGTG. 48 (92.37)
3 - .AGCGGAGTGTCG. 19 (90.52)
4 + [AGAGATGAGGCA] 20 (87.14)
4 + .AGCGAGAGATCG. 119 (94.75)
4 + .TACGAAAAAGCG. 331 (91.98)
5 + [AGAAAATCGGCG] 43 (89.06)
5 + .AGCGAGAGATCG. 119 (94.75)
5 + .TACGAAAAAGCG. 331 (91.98)
6 + [TGAAAAATAACG] 185 (85.43)
6 - [AGAAAAACGTTA] 192 (85.71)
6 - [AGCAAAAAAAAT] 155 (85.84)
6 - .AGAAAAACGGTG. 141 (91.08)
7 - .AGAAAAAAACCG. 194 (91.26)
7 - [TGAAAAACAGCA] 182 (85.84)
7 - [TGTGAAAAAGGG] 152 (85.13)
7 - [TGAAAAAGGGAA] 150 (86.52)
7 - [AAAATAATAGCG] 128 (85.63)
7 - .AGCGAAATGGAA. 120 (91.65)
7 - [AGCAGACGGGGG] 82 (85.81)
8 + [AGCGAACACTCT] 58 (87.66)
8 + .AGCGAAAGGGCG. 122 (100.00)
9 - [AGAGAAAAAGGC] 145 (87.28)
9 - .AGAAAAAGGCCT. 143 (90.21)
9 - [AAAATAATGGCG] 130 (86.60)
9 - [AGATTAAAGGCG] 111 (87.92)
10 + .AGCGAACACTCG. 58 (90.37)
10 + .AGCGAAAGGGCG. 122 (100.00)
10 + [AGAGAGACAGTA] 138 (85.86)
10 + [AGTATAAAAGCG] 166 (85.97)
10 - [AGAAGGAGACCG] 68 (86.29)
11 + .TACGAAAAAGCG. 17 (91.98)
12 + .AGAGAAAAGTCT. 81 (94.05)
12 - [TGAAAAAACTCG] 110 (87.34)
12 - .AGCGGGAGAGCG. 27 (93.37)
12 - .AGCGGAGTGTCG. 19 (90.52)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 24 | 0 | 0 | 3 | | | | 19 | 0 | 0 | 3 |
2 | | 4 | 0 | 22 | 1 | | | | 4 | 0 | 18 | 0 |
3 | | 9 | 17 | 0 | 1 | | | | 7 | 14 | 0 | 1 |
4 | | 5 | 0 | 21 | 1 | | | | 3 | 0 | 19 | 0 |
5 | | 22 | 0 | 4 | 1 | | | | 19 | 0 | 3 | 0 |
6 | | 21 | 0 | 4 | 2 | | | | 16 | 0 | 5 | 1 |
7 | | 21 | 2 | 3 | 1 | | | | 19 | 1 | 2 | 0 |
8 | | 8 | 3 | 12 | 4 | | | | 8 | 1 | 9 | 4 |
9 | | 9 | 2 | 16 | 0 | | | | 12 | 1 | 9 | 0 |
10 | | 1 | 2 | 17 | 7 | | | | 0 | 2 | 13 | 7 |
11 | | 4 | 19 | 1 | 3 | | | | 5 | 15 | 0 | 2 |
12 | | 2 | 1 | 20 | 4 | | | | 1 | 0 | 19 | 2 |
*** Interesting motifs (not highest-ranking) can also be :
AGCGAG
CTCGCT
3 redundant motifs found:
AGCGAGCA - GGCGAG - GCGAGA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .GGCGAG. 75 (92.55)
1 - .AGAGAA. 149 (91.43)
1 - .AGCGAA. 103 (94.91)
1 - .AGCGAT. 85 (92.37)
1 - [GGAGAG] 47 (89.07)
2 + .AGCGAT. 24 (92.37)
2 + .AGCGAA. 56 (94.91)
2 + .AGCGAA. 119 (94.91)
2 + .AGAGAG. 135 (96.52)
2 + .AGAGAG. 137 (96.52)
2 + .AGAGAG. 139 (96.52)
2 + [AGAGAT] 141 (88.88)
2 + [AGAGAT] 147 (88.88)
2 + .AGAGAG. 153 (96.52)
2 + [AGGGAG] 157 (89.94)
2 + [GGAGAG] 159 (89.07)
2 + .AGAGAG. 161 (96.52)
2 + .AGAGAA. 163 (91.43)
2 - .AGAGAG. 72 (96.52)
2 - [AGAGAT] 70 (88.88)
3 + [AGCGTG] 131 (86.19)
3 - [TGCGAG] 43 (89.19)
4 + [AGAGAT] 20 (88.88)
4 + .AGCGAG. 119 (100.00)
4 + [AGAGAT] 123 (88.88)
4 + .AGCGAG. 339 (100.00)
5 + .AGCGAG. 119 (100.00)
5 + [AGAGAT] 123 (88.88)
5 + .AGCGAG. 339 (100.00)
6 + [AGCGCG] 10 (86.19)
6 - [GGAGAG] 93 (89.07)
6 - .AGAGAG. 91 (96.52)
6 - .AGAGAA. 89 (91.43)
6 - .GGCGAG. 44 (92.55)
7 + .GGCGAG. 75 (92.55)
7 - .AGCGAA. 126 (94.91)
7 - [AGTGAG] 92 (87.39)
8 + .AGCGAT. 24 (92.37)
8 + .AGCGAA. 58 (94.91)
8 + .AGCGAA. 122 (94.91)
8 + [AGAGAC] 138 (86.34)
8 + [AGCGAC] 170 (89.82)
8 - [TGAGAG] 93 (85.71)
8 - .AGAGAG. 91 (96.52)
8 - [TGAGAG] 84 (85.71)
8 - [AGAGAC] 82 (86.34)
8 - [AGGGAG] 33 (89.94)
9 + .GGCGAG. 76 (92.55)
9 + [CGCGAG] 85 (86.65)
9 + [GGCGAA] 90 (87.47)
9 - .AGAGAA. 151 (91.43)
9 - [GGCGAA] 128 (87.47)
9 - [TGCGAG] 121 (89.19)
9 - .AGAGAA. 30 (91.43)
10 + .AGCGAT. 24 (92.37)
10 + .AGCGAA. 58 (94.91)
10 + .AGCGAA. 122 (94.91)
10 + .AGAGAG. 138 (96.52)
10 + [AGAGAC] 140 (86.34)
10 + [AGCGAC] 174 (89.82)
10 - .AGAGAG. 91 (96.52)
10 - [GGAGAG] 84 (89.07)
10 - [AGAGAC] 82 (86.34)
10 - [ACCGAG] 66 (86.03)
11 + .AGCGAG. 25 (100.00)
12 + .AGAGAG. 79 (96.52)
12 + .AGAGAA. 81 (91.43)
12 - [GGAGAG] 93 (89.07)
12 - .AGAGAG. 91 (96.52)
12 - [AGAGAC] 89 (86.34)
12 - .GGCGAG. 44 (92.55)
12 - [AGCGGG] 33 (86.19)
12 - [GGAGAG] 29 (89.07)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 38 | 1 | 5 | 2 | | | | 35 | 0 | 5 | 0 |
2 | | 0 | 1 | 45 | 0 | | | | 0 | 0 | 40 | 0 |
3 | | 12 | 31 | 2 | 1 | | | | 18 | 22 | 0 | 0 |
4 | | 0 | 0 | 46 | 0 | | | | 0 | 0 | 40 | 0 |
5 | | 43 | 1 | 1 | 1 | | | | 40 | 0 | 0 | 0 |
6 | | 8 | 2 | 32 | 4 | | | | 14 | 0 | 22 | 4 |
GCGAGCAC
GTGCTCGC
4 redundant motifs found:
AGCGAGCACA - AGCGAGCA - GCGAACAC - GCGAGACC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [ACGCGAAA] 14 (86.39)
1 + .GCGAAAAA. 16 (91.77)
1 + .GCGAGACC. 76 (98.08)
1 - [GTGAAAAA] 154 (86.36)
1 - .GCGAAACC. 100 (96.03)
2 + .GCGAACAC. 57 (97.94)
3 + .GCGCGCAA. 11 (92.66)
3 + [GCGCAACG] 13 (88.69)
3 + [ACGAAAAA] 49 (86.26)
3 - [GTGAAAAA] 106 (86.36)
3 - [AGGCGCAC] 59 (87.15)
3 - .GCGCACAC. 57 (96.02)
3 - .GCGAGACC. 40 (98.08)
3 - .GCGCGCCC. 9 (96.91)
4 + [ACGAAAAA] 332 (86.26)
4 + .GCGAGCAC. 340 (100.00)
4 + .GCGTAACC. 362 (91.08)
4 - .GGGAGAAC. 245 (93.83)
5 + [ACGAAAAA] 332 (86.26)
5 + .GCGAGCAC. 340 (100.00)
5 + .GCGTAACC. 362 (91.08)
5 - .GGGAACCC. 246 (91.37)
6 - [GTGAAAAA] 136 (86.36)
6 - .GCGTGAAC. 127 (94.30)
6 - .GCGAGACC. 41 (98.08)
7 + .GCGAGACC. 76 (98.08)
7 - [GTGAAAAA] 187 (86.36)
7 - [GTGAAAAA] 155 (86.36)
7 - [GGGAAAAA] 147 (86.36)
7 - [GTGAGCAG] 89 (89.18)
8 + .GCGAACAC. 59 (97.94)
8 - .ACGCACAC. 150 (90.50)
8 - [GGGAGAAA] 30 (88.42)
9 + .GCGAGACC. 77 (98.08)
9 + [AGGCGAAC] 89 (86.39)
9 - [AGGCGCAC] 108 (87.15)
9 - .GCGCACAC. 106 (96.02)
10 + .GCGAACAC. 59 (97.94)
10 - [AGGAGACC] 69 (87.16)
11 + [ACGAAAAA] 18 (86.26)
11 + .GCGAGCAC. 26 (100.00)
11 + .GCGTAACC. 48 (91.08)
12 + .ACGCGCAC. 9 (92.56)
12 - .GCGAGACC. 41 (98.08)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 0 | 19 | 0 | | | | 2 | 0 | 24 | 0 |
2 | | 0 | 18 | 1 | 1 | | | | 0 | 24 | 2 | 0 |
3 | | 0 | 0 | 20 | 0 | | | | 0 | 0 | 26 | 0 |
4 | | 14 | 5 | 0 | 1 | | | | 16 | 6 | 0 | 4 |
5 | | 5 | 0 | 15 | 0 | | | | 12 | 0 | 14 | 0 |
6 | | 8 | 12 | 0 | 0 | | | | 13 | 13 | 0 | 0 |
7 | | 13 | 7 | 0 | 0 | | | | 14 | 12 | 0 | 0 |
8 | | 1 | 18 | 1 | 0 | | | | 2 | 24 | 0 | 0 |
GAGCGAAAGGGC
GCCCTTTCGCTC
4 redundant motifs found:
GGAGCGAAAGGG - AGCGAAAGGGCG - GCGAAAGGGC - GAGCGAAAGG -
Best occurrences (match percentage):
Seq St oligo pos match
1 - [GAGTGAAAAAGA] 152 (87.47)
1 - [GTGAAAAAGAGA] 150 (86.78)
1 - .GAGAAAAAGGCC. 142 (91.88)
2 + .GAGCGAAAGGGC. 118 (100.00)
2 + [CAGAGAGAGAGA] 134 (85.45)
2 + [GAGAGAGAGATA] 136 (89.83)
2 + .GAGAGAGATAGA. 138 (90.11)
2 + [GAGAGATAGAGA] 140 (89.96)
2 + [GATAGAGATAGA] 144 (85.03)
2 + [GATAGAGAGGGA] 150 (88.96)
2 + [GAGAGGGAGAGA] 154 (88.52)
2 + [GAGGGAGAGAGA] 156 (88.74)
2 + .GAGAGAAATGAC. 162 (93.00)
3 - [GAGCGGAGTGTC] 20 (88.72)
4 + .GAGCGAGAGATC. 118 (93.03)
5 + .GAGCGAGAGATC. 118 (93.03)
6 - [GAGAGAGAAGAA] 86 (87.11)
7 - [GTGAAAAACAGC] 183 (85.02)
7 - [GTGAAAAAGGGA] 151 (88.94)
7 - [GGGAAAAAAGGC] 143 (87.18)
7 - [TAGCGAAATGGA] 121 (89.54)
8 + .GAGCGAAAGGGC. 121 (100.00)
9 - .GAGAAAAAGGCC. 144 (91.88)
10 + .GAGCGAAAGGGC. 121 (100.00)
12 + .GAGAGAAAAGTC. 80 (94.44)
12 - [AAGCGGGAGAGC] 28 (86.74)
12 - [GAGCGGAGTGTC] 20 (88.72)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 2 | 1 | 22 | 1 | | | | 0 | 0 | 10 | 0 |
2 | | 22 | 1 | 1 | 2 | | | | 10 | 0 | 0 | 0 |
3 | | 1 | 0 | 23 | 2 | | | | 0 | 0 | 10 | 0 |
4 | | 9 | 14 | 2 | 1 | | | | 5 | 5 | 0 | 0 |
5 | | 5 | 0 | 20 | 1 | | | | 2 | 0 | 8 | 0 |
6 | | 20 | 1 | 4 | 1 | | | | 10 | 0 | 0 | 0 |
7 | | 19 | 0 | 5 | 2 | | | | 7 | 0 | 3 | 0 |
8 | | 22 | 1 | 3 | 0 | | | | 10 | 0 | 0 | 0 |
9 | | 4 | 2 | 14 | 6 | | | | 1 | 0 | 7 | 2 |
10 | | 6 | 2 | 17 | 1 | | | | 3 | 0 | 7 | 0 |
11 | | 2 | 2 | 16 | 6 | | | | 1 | 2 | 4 | 3 |
12 | | 6 | 18 | 1 | 1 | | | | 1 | 9 | 0 | 0 |
GAGACC
GGTCTC
2 redundant motifs found:
GCGAGACC - GCGAGA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [GAAACA] 8 (86.68)
1 + .GAGACC. 78 (100.00)
1 - [GAGAAA] 148 (86.95)
1 - .GAAACC. 100 (90.25)
2 + [GAGAGA] 136 (86.95)
2 + [GAGAGA] 138 (86.95)
2 + [GAGAGA] 140 (86.95)
2 + [GAGATA] 142 (89.08)
2 + [GAGATA] 148 (89.08)
2 + [GAGAGA] 160 (86.95)
2 + [GAGAGA] 162 (86.95)
2 + [GAGAAA] 164 (86.95)
2 + [GAAACT] 196 (85.12)
2 - [TAGATC] 102 (85.02)
2 - .GAGACA. 90 (96.43)
2 - .GAGACA. 79 (96.43)
2 - [GAGAGA] 71 (86.95)
2 - [GAGATA] 69 (89.08)
2 - [GATACA] 67 (86.68)
2 - [GAAACT] 12 (85.12)
3 - .GAGACC. 40 (100.00)
4 + [GAGATG] 21 (86.27)
4 + [GAAACT] 70 (85.12)
4 + [GAGAGA] 122 (86.95)
4 + .GAGATC. 124 (92.65)
4 - [TAGATC] 267 (85.02)
4 - .GAGAAC. 245 (90.52)
4 - .TAGACC. 108 (92.38)
5 + [GAAACT] 70 (85.12)
5 + [GAGAGA] 122 (86.95)
5 + .GAGATC. 124 (92.65)
5 - [TAGATC] 267 (85.02)
5 - .TAGACC. 108 (92.38)
6 - [GAGAGA] 92 (86.95)
6 - [GAGAGA] 90 (86.95)
6 - .GAGACC. 41 (100.00)
7 + .GAGACA. 43 (96.43)
7 + .GAGACC. 78 (100.00)
7 - .GAGACC. 100 (100.00)
8 + [GAAACT] 42 (85.12)
8 + .GAGACA. 139 (96.43)
8 - [GAGAGA] 92 (86.95)
8 - [GAGAGT] 90 (85.38)
8 - [GAGAGA] 83 (86.95)
8 - .GAGACG. 81 (93.62)
8 - [GATACA] 69 (86.68)
8 - [GAGAAA] 30 (86.95)
8 - .GAGACT. 12 (94.87)
9 + .GAGACC. 79 (100.00)
9 - [GAGAAA] 150 (86.95)
9 - [GAGATT] 118 (87.51)
9 - [GAGAAT] 29 (85.38)
10 + [GAGAGA] 139 (86.95)
10 + .GAGACA. 141 (96.43)
10 - .GATACC. 192 (90.25)
10 - [GAGAGA] 92 (86.95)
10 - [GAGAGT] 90 (85.38)
10 - [GAGAGA] 83 (86.95)
10 - .GAGACG. 81 (93.62)
10 - .GAGACC. 69 (100.00)
10 - .GAGACT. 12 (94.87)
12 + [GAGAGA] 80 (86.95)
12 + [GAGAAA] 82 (86.95)
12 - [GAGAGA] 92 (86.95)
12 - [GAGAGA] 90 (86.95)
12 - .GAGACT. 88 (94.87)
12 - .GAGACC. 41 (100.00)
12 - .GAGAGC. 28 (90.52)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 0 | 24 | 2 | | | | 0 | 0 | 24 | 2 |
2 | | 26 | 0 | 0 | 0 | | | | 26 | 0 | 0 | 0 |
3 | | 1 | 0 | 24 | 1 | | | | 1 | 0 | 24 | 1 |
4 | | 26 | 0 | 0 | 0 | | | | 26 | 0 | 0 | 0 |
5 | | 1 | 22 | 1 | 2 | | | | 1 | 22 | 1 | 2 |
6 | | 5 | 16 | 2 | 3 | | | | 5 | 16 | 2 | 3 |
GGCGAGAC
GTCTCGCC
6 redundant motifs found:
GTCTCGCCAC - GGCGAGACCC - GGCGGCAC - GCGAGACC - GGCGAG - GCGAGA -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .GGCGAGAC. 75 (100.00)
1 - .AGCGAAAC. 101 (90.15)
1 - .GGGGAGAG. 47 (91.97)
1 - .GGAGAGGC. 45 (92.60)
1 - .GGCAACAC. 40 (90.08)
2 + [AGCGAAAG] 119 (86.76)
2 + .GGCGGCAC. 127 (90.17)
2 + .AGAGAGAG. 135 (91.07)
2 + .AGAGAGAG. 137 (91.07)
2 + [AGAGAGAT] 139 (86.03)
2 + [AGAGGGAG] 155 (85.03)
2 + [AGGGAGAG] 157 (87.71)
2 + .GGAGAGAG. 159 (95.33)
2 + [AGAGAGAA] 161 (86.03)
2 - [GATGAGAC] 91 (88.28)
2 - [TGAGACAG] 89 (85.95)
2 - [GGAGACAT] 78 (86.51)
2 - [AGAGAGAT] 70 (86.03)
3 - [GGAAAAAC] 146 (87.02)
3 - .TGCGAGAC. 41 (94.41)
4 + [GGTGAAAC] 67 (89.78)
4 + .AGCGAGAG. 119 (92.34)
4 + .GGGGACAC. 141 (91.57)
4 - .GGAAAGAC. 299 (92.60)
4 - [GGGGAGAA] 246 (86.94)
5 + [GGTGAAAC] 67 (89.78)
5 + .AGCGAGAG. 119 (92.34)
5 - .GGAAAGAC. 299 (92.60)
6 - .GGAGAGAG. 91 (95.33)
6 - [AGAGAGAA] 89 (86.03)
6 - .GGCGAGAC. 42 (100.00)
7 + .GGAGACAC. 42 (94.93)
7 + .GGCGAGAC. 75 (100.00)
8 + [AGCGAAAG] 122 (86.76)
8 + .GGCGGCAC. 130 (90.17)
8 + [ACAGAGAC] 136 (85.58)
8 - [TGAGAGAG] 91 (89.75)
8 - .TGAGAGAC. 82 (93.14)
9 + .GGCGAGAC. 76 (100.00)
9 + [CGCGAGGC] 85 (85.45)
9 - [TGCGAGAT] 119 (85.99)
10 + [AGCGAAAG] 122 (86.76)
10 + .GGCGGCAC. 130 (90.17)
10 + .AGAGAGAC. 138 (94.46)
10 + [AGAGACAG] 140 (87.27)
10 - [GACGAGAG] 93 (89.52)
10 - [CGAGAGAG] 91 (86.90)
10 - .GGAGAGAC. 82 (98.73)
12 + [AGAGAGAA] 79 (86.03)
12 - .GGAGAGAG. 91 (95.33)
12 - .AGAGAGAC. 89 (94.46)
12 - .GGCGAGAC. 42 (100.00)
12 - [AGCGGGAG] 31 (86.30)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 5 | 1 | 26 | 3 | | | | 7 | 0 | 19 | 2 |
2 | | 2 | 1 | 31 | 1 | | | | 0 | 0 | 28 | 0 |
3 | | 11 | 18 | 3 | 3 | | | | 13 | 13 | 2 | 0 |
4 | | 3 | 0 | 32 | 0 | | | | 3 | 0 | 25 | 0 |
5 | | 31 | 1 | 3 | 0 | | | | 25 | 0 | 3 | 0 |
6 | | 3 | 6 | 26 | 0 | | | | 1 | 6 | 21 | 0 |
7 | | 32 | 0 | 3 | 0 | | | | 27 | 0 | 1 | 0 |
8 | | 1 | 26 | 7 | 1 | | | | 0 | 20 | 8 | 0 |
GAGCGAAAGG
CCTTTCGCTC
4 redundant motifs found:
GGAGCGAAAGGG - AGGAGCGAAAGG - GAGCGAAAGGGC - GCGAAAGGGC -
Best occurrences (match percentage):
Seq St oligo pos match
1 - .GAGTGAAAAA. 154 (90.14)
1 - [GTGAAAAAGA] 152 (88.24)
1 - .GAGAAAAAGG. 144 (94.87)
1 - [TCGCGAAATG] 123 (85.18)
2 + [GTGTGGGAGG] 109 (88.63)
2 + .GAGCGAAAGG. 118 (100.00)
2 + [CAGAGAGAGA] 134 (87.22)
2 + .GAGAGAGAGA. 136 (94.70)
2 + .GAGAGAGATA. 138 (91.48)
2 + .GAGAGATAGA. 140 (91.08)
2 + [GAGATAGAGA] 142 (87.30)
2 + [GATAGAGATA] 144 (85.47)
2 + [TAGAGATAGA] 146 (85.16)
2 + [GAGATAGAGA] 148 (87.30)
2 + .GATAGAGAGG. 150 (91.71)
2 + .GAGAGGGAGA. 154 (91.49)
2 + [GAGGGAGAGA] 156 (89.31)
2 + .GAGAGAGAAA. 160 (90.98)
2 + .GAGAGAAATG. 162 (95.94)
2 - [TAGAGAGATA] 69 (85.55)
2 - [GAGAGATACA] 67 (85.80)
3 - [GAGCGGAGTG] 22 (88.64)
4 + .GAGCGAGAGA. 118 (95.54)
4 + [GTGTGAAAGT] 130 (87.79)
4 - .GTGCGGGAGG. 305 (91.74)
5 + .GAGCGAGAGA. 118 (95.54)
5 - .GTGCGGGAGG. 305 (91.74)
6 - [GTGAAAAATG] 134 (88.03)
6 - .GAGAGAGAAG. 88 (93.99)
6 - [GAGAGAAGAA] 86 (87.48)
7 - .GTGAAAAAGG. 153 (91.26)
7 - .TAGCGAAATG. 123 (90.85)
7 - [GAGCAGACGG] 85 (85.10)
8 + .GAGCGAAAGG. 121 (100.00)
8 - [GAGAGAGTTG] 88 (87.09)
8 - [GAGGGAGAAA] 30 (85.59)
9 - [GTTCGAAAAG] 155 (86.66)
9 - .GAGAAAAAGG. 146 (94.87)
10 + .GAGTGGGAGG. 112 (92.24)
10 + .GAGCGAAAGG. 121 (100.00)
10 + [GAGAGACAGT] 139 (87.06)
10 - [GAGTAGAAGA] 209 (86.38)
10 - .GAGAGAGTGG. 88 (90.32)
10 - [GAGTGGAGAG] 84 (85.02)
12 + .GAGAGAAAAG. 80 (95.43)
12 - [GAGAGAGACT] 88 (86.95)
12 - [GAGCGGAGTG] 22 (88.64)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 1 | 28 | 2 | | | | 0 | 0 | 22 | 1 |
2 | | 25 | 2 | 0 | 5 | | | | 20 | 0 | 0 | 3 |
3 | | 1 | 0 | 29 | 2 | | | | 0 | 0 | 22 | 1 |
4 | | 11 | 16 | 1 | 4 | | | | 13 | 8 | 0 | 2 |
5 | | 4 | 0 | 27 | 1 | | | | 3 | 0 | 20 | 0 |
6 | | 25 | 1 | 6 | 0 | | | | 19 | 0 | 4 | 0 |
7 | | 19 | 1 | 10 | 2 | | | | 10 | 0 | 12 | 1 |
8 | | 27 | 1 | 3 | 1 | | | | 22 | 0 | 0 | 1 |
9 | | 4 | 2 | 21 | 5 | | | | 4 | 0 | 16 | 3 |
10 | | 6 | 1 | 23 | 2 | | | | 8 | 0 | 15 | 0 |
GGGTCTCGCCAC
GTGGCGAGACCC
3 redundant motifs found:
GGGTCTCGCAAC - GTCTCGCCAC - GGCGAGACCC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + [GAGTGTTGCCTC] 38 (88.74)
1 - .GGGTCTCGCCGC. 73 (98.14)
3 + [AGGGCGCGCAAC] 8 (89.73)
3 + .GGGTCTCGCAAC. 39 (98.64)
4 + .GGTTCTCCCCAA. 244 (92.46)
6 + .GGGTCTCGCCAC. 40 (100.00)
7 - .GGGTCTCGCCAC. 73 (100.00)
7 - [GAGTGTCTCCTA] 40 (87.14)
8 + .GCGTCTCTCAAC. 80 (95.06)
9 - .GGGTCTCGCCGC. 74 (98.14)
10 + .GCGTCTCTCCAC. 80 (96.42)
10 + [GGGTATCCTCAT] 191 (89.61)
12 + .GGGTCTCGCCAC. 40 (100.00)
12 - [GAGTGTCGTAGT] 15 (85.38)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 0 | 11 | 0 | | | | 0 | 0 | 9 | 0 |
2 | | 1 | 2 | 9 | 0 | | | | 0 | 2 | 7 | 0 |
3 | | 0 | 0 | 11 | 1 | | | | 0 | 0 | 8 | 1 |
4 | | 0 | 0 | 1 | 11 | | | | 0 | 0 | 0 | 9 |
5 | | 1 | 10 | 1 | 0 | | | | 0 | 9 | 0 | 0 |
6 | | 0 | 0 | 1 | 11 | | | | 0 | 0 | 0 | 9 |
7 | | 0 | 11 | 0 | 1 | | | | 0 | 9 | 0 | 0 |
8 | | 0 | 2 | 8 | 2 | | | | 0 | 1 | 6 | 2 |
9 | | 0 | 11 | 0 | 1 | | | | 0 | 9 | 0 | 0 |
10 | | 3 | 9 | 0 | 0 | | | | 2 | 7 | 0 | 0 |
11 | | 9 | 0 | 2 | 1 | | | | 7 | 0 | 2 | 0 |
12 | | 1 | 10 | 0 | 1 | | | | 1 | 8 | 0 | 0 |
CGCCTT
AAGGCG
2 redundant motifs found:
GCGCCTTT - GCGCCT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .CGCCTT. 111 (100.00)
1 + .GGCCTT. 142 (91.94)
1 + .CGCCGT. 181 (92.49)
1 + [CGTTTT] 184 (85.47)
1 - .CGCATT. 177 (92.74)
1 - [CGATTT] 57 (87.80)
1 - .CGCGTT. 13 (91.38)
2 + [CGATTT] 26 (87.80)
2 + .CGTCTT. 228 (91.01)
2 - .CGCCCT. 125 (93.46)
3 + .CGCCTT. 62 (100.00)
3 + [CGTTTT] 113 (85.47)
3 - .CGCCCT. 8 (93.46)
4 - .CGCTTT. 337 (94.46)
4 - .CGACTT. 170 (93.34)
4 - [CGCAGT] 147 (85.24)
4 - .CGACTT. 136 (93.34)
4 - .CGCCGT. 50 (92.49)
4 - [CGTTTT] 47 (85.47)
5 - .CGCTTT. 337 (94.46)
5 - .CGACTT. 230 (93.34)
5 - .CGACTT. 170 (93.34)
5 - [CGCTGT] 143 (86.95)
5 - [CGGCTT] 136 (88.68)
5 - [GGCTTT] 135 (86.40)
5 - [CGATTT] 46 (87.80)
6 + .CGCCGT. 29 (92.49)
6 + .CGCCTT. 62 (100.00)
6 + .CGCATT. 132 (92.74)
6 + [CGTTTT] 144 (85.47)
6 + [CGTTTT] 195 (85.47)
6 - [CGCTGT] 8 (86.95)
7 + .CGCCTT. 111 (100.00)
7 + .GGCCTT. 142 (91.94)
7 - .CGCATT. 107 (92.74)
7 - [CGATTT] 57 (87.80)
8 + [CGATTT] 26 (87.80)
8 - .CGCTTT. 168 (94.46)
8 - .CGCCCT. 128 (93.46)
9 + .CGCCTT. 111 (100.00)
9 + [CGCCAT] 130 (88.80)
9 + .GGCCTT. 144 (91.94)
9 + [CGATTT] 185 (87.80)
9 - [CGAATT] 126 (86.09)
9 - [CGCCTC] 88 (88.05)
9 - [CGATTT] 58 (87.80)
9 - [CGTTTT] 9 (85.47)
10 + [CGATTT] 26 (87.80)
10 + [CTCCTT] 72 (88.05)
10 + .CGTCTT. 207 (91.01)
10 - .CGCTTT. 172 (94.46)
10 - .CGCCCT. 128 (93.46)
11 - .CGCTTT. 23 (94.46)
12 + [CGCACT] 12 (86.20)
12 + [CGCTCT] 27 (87.92)
12 + .CGCCTT. 62 (100.00)
12 + [CGTTTT] 194 (85.47)
12 - .CGCGTT. 8 (91.38)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 33 | 3 | 0 | | | | 0 | 29 | 3 | 0 |
2 | | 0 | 0 | 35 | 1 | | | | 0 | 0 | 32 | 0 |
3 | | 4 | 29 | 1 | 2 | | | | 4 | 26 | 0 | 2 |
4 | | 3 | 26 | 2 | 5 | | | | 3 | 22 | 2 | 5 |
5 | | 1 | 4 | 3 | 28 | | | | 0 | 4 | 3 | 25 |
6 | | 0 | 1 | 0 | 35 | | | | 0 | 0 | 0 | 32 |
GCGAACAC
GTGTTCGC
2 redundant motifs found:
GCGAACACTC - GCGAGCAC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .GCGAAAAA. 16 (93.45)
1 + [GCGAGACC] 76 (89.92)
1 + [GCGGACTA] 91 (88.05)
1 + .TCGAAAAA. 203 (90.44)
1 - .TCGAAAAA. 199 (90.44)
1 - [GCCAAAAT] 165 (89.68)
1 - [GAGAAAAA] 146 (87.76)
1 - [GCCCAAAA] 137 (87.43)
1 - .GCGAAACC. 100 (93.64)
1 - .GGCAACAC. 40 (93.36)
2 + .GCGAACAC. 57 (100.00)
2 + [GAACACAC] 59 (85.71)
2 - .TCCCACAC. 109 (90.98)
2 - [TGGAAAAT] 28 (86.05)
3 + [GCGCGCAA] 11 (89.72)
3 + [ACGAAAAA] 49 (87.85)
3 + [GGGAATAT] 80 (86.46)
3 - [GCAAAAAT] 198 (87.09)
3 - [TCAAAAAC] 157 (88.39)
3 - [GGAAAAAC] 146 (87.76)
3 - [GGCAAAAA] 137 (86.80)
3 - .GCAAAAAC. 136 (91.39)
3 - .GCGCACAC. 57 (96.99)
3 - [GCGAGACC] 40 (89.92)
3 - [GCGCGCCC] 9 (89.92)
4 + [TAGAAAAC] 44 (88.30)
4 + .GGGGACAC. 141 (90.77)
4 + [ACGCACAT] 176 (87.09)
4 + [TAGAACTC] 205 (88.49)
4 + [TCCCGCAC] 307 (87.25)
4 + .TCGAATAC. 321 (91.39)
4 + [ACGAAAAA] 332 (87.85)
4 + .GCGAGCAC. 340 (96.28)
4 + [GAGCACAA] 342 (87.76)
4 + [GCACAAAC] 344 (88.39)
4 - [TCAAATAC] 370 (85.80)
4 - [GGGAGAAC] 245 (89.63)
4 - .GAGAACCC. 243 (90.96)
5 + [ACGCACAT] 176 (87.09)
5 + .TCGAACTC. 205 (94.18)
5 + [GCAAAATC] 218 (88.58)
5 + [TCCCGCAC] 307 (87.25)
5 + [ACGAAAAA] 332 (87.85)
5 + .GCGAGCAC. 340 (96.28)
5 + [GAGCACAA] 342 (87.76)
5 + [GCACAAAC] 344 (88.39)
5 - .GCCAACTC. 376 (94.18)
5 - [TCAAATAC] 370 (85.80)
5 - .GGGAACCC. 246 (93.02)
5 - .TCGAAAAA. 201 (90.44)
6 + [GGGAAATT] 79 (86.24)
6 - [GCAAAAAA] 158 (87.85)
6 - [GAAAAAAC] 113 (85.71)
6 - [GCGAGACC] 41 (89.92)
7 + [GGAGACAC] 42 (85.17)
7 + [GCGAGACC] 76 (89.92)
7 + [TGGAAAAA] 206 (86.80)
7 - .GCCAAAAA. 166 (90.44)
7 - [GGGAAAAA] 147 (89.81)
7 - [GCCCAAAA] 137 (87.43)
8 + [GCCAACTT] 49 (89.88)
8 + .GCGAACAC. 59 (100.00)
8 - .ACGCACAC. 150 (91.39)
8 - .GCCCACAC. 112 (93.99)
8 - [GGGAGAAA] 30 (86.09)
8 - [GAGAAAAT] 28 (87.00)
9 + [GAAAAAAC] 6 (85.71)
9 + .GCCAAAAA. 14 (90.44)
9 + [GGCAGAAC] 39 (86.63)
9 + [GCGAGACC] 77 (89.92)
9 + .GCGAACTA. 91 (93.64)
9 + .TCGAACAT. 159 (92.69)
9 - .GCGAAAAT. 178 (92.69)
9 - .GCCAAAAA. 166 (90.44)
9 - [GAGAAAAA] 148 (87.76)
9 - [GCGAGATT] 118 (86.16)
9 - .GCGCACAC. 106 (96.99)
9 - [GCACACTC] 104 (88.58)
9 - [GAGAATTC] 27 (85.90)
10 + [GCCAACTT] 49 (89.88)
10 + .GCGAACAC. 59 (100.00)
10 - [TCCCACTC] 112 (88.17)
11 + [ACGAAAAA] 18 (87.85)
11 + .GCGAGCAC. 26 (96.28)
11 + [GAGCACAA] 28 (87.76)
11 + [GCACAAAC] 30 (88.39)
11 - .GCCAACTC. 62 (94.18)
11 - [TCAAATAC] 56 (85.80)
12 + [ACGCGCAC] 9 (87.67)
12 + .GCGCACTA. 11 (90.64)
12 + [GCCAAATT] 142 (86.87)
12 + [TCGAAATT] 175 (86.87)
12 - .TCGAACAA. 171 (93.45)
12 - [GCAAAAAT] 147 (87.09)
12 - [GGCAAAAA] 137 (86.80)
12 - [GAAAAAAC] 113 (85.71)
12 - .TCGAAAAA. 105 (90.44)
12 - [GCGAGACC] 41 (89.92)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 0 | 20 | 4 | | | | 1 | 0 | 24 | 9 |
2 | | 1 | 21 | 3 | 0 | | | | 1 | 30 | 3 | 0 |
3 | | 1 | 4 | 20 | 0 | | | | 1 | 8 | 25 | 0 |
4 | | 20 | 4 | 1 | 0 | | | | 27 | 6 | 1 | 0 |
5 | | 22 | 0 | 3 | 0 | | | | 31 | 0 | 3 | 0 |
6 | | 4 | 20 | 0 | 1 | | | | 11 | 22 | 0 | 1 |
7 | | 18 | 3 | 0 | 4 | | | | 26 | 3 | 0 | 5 |
8 | | 3 | 20 | 0 | 2 | | | | 11 | 21 | 0 | 2 |
CGAAAGGGCG
CGCCCTTTCG
3 redundant motifs found:
CGAAAGGGCGGC - AGCGAAAGGGCG - GCGAAAGGGC -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .CGAAACAACG. 7 (92.95)
1 + [CGAAAAATTA] 17 (88.44)
1 + .CTAAAATGCG. 173 (92.46)
1 + [CGAAAAATAA] 204 (88.44)
1 - [CGAAAAAAAA] 196 (87.31)
1 - .AAAAACGGCG. 181 (91.17)
1 - [CAAAATTGAG] 161 (89.38)
1 - [AAAAAGAGAA] 149 (86.95)
1 - [AGAGAAAAAG] 145 (87.23)
1 - [AAAATAATCG] 130 (85.33)
2 + [CGTGTGGGAG] 108 (88.49)
2 + .CGAAAGGGCG. 121 (100.00)
2 + .AGAGAGAGAG. 135 (93.45)
2 + [AGAGAGATAG] 139 (89.79)
2 + .AGAGATAGAG. 141 (90.53)
2 + .AGAGATAGAG. 147 (90.53)
2 + .AGAGAGGGAG. 153 (93.45)
2 + [AGGGAGAGAG] 157 (88.58)
2 + [GGAGAGAGAA] 159 (87.92)
2 - .AGAAAGAGTA. 238 (90.61)
2 - [GGAGACATAG] 76 (85.74)
3 + .CGAAAAAGTG. 50 (95.85)
3 + [AAAAAGTGTG] 52 (89.38)
3 + [AAAGTGTGCG] 54 (88.19)
3 + [CGTAAAGTAG] 123 (87.31)
3 - [AAAAATAACG] 194 (85.71)
3 - [AAAAACAACG] 153 (86.37)
4 + [ATAGAAAACG] 43 (85.17)
4 + [GAAAACGGCG] 46 (89.38)
4 + [CTAAAATGAG] 111 (89.74)
4 + .AAAATGAGCG. 113 (90.42)
4 + .CGAGAGATCG. 121 (95.43)
4 + [AAAAAAGTCG] 166 (88.33)
4 + .CGAAAAAGCG. 333 (98.58)
4 + [CGTATTTGAG] 369 (85.16)
4 - [GAAATGTGCG] 177 (87.31)
5 + [AAAATCGGCG] 45 (88.16)
5 + [CTAAACTGAG] 111 (88.91)
5 + .CGAGAGATCG. 121 (95.43)
5 + [AAAAAAGTCG] 166 (88.33)
5 + .CGAAAAAGCG. 333 (98.58)
5 + [CGTATTTGAG] 369 (85.16)
5 - [GAAATGTGCG] 177 (87.31)
6 + [AAAAATAACG] 187 (85.71)
6 - [AAAAACGGTG] 141 (88.44)
6 - [GAAAAATGCG] 132 (88.89)
6 - [GGAGAGAGAA] 89 (87.92)
7 + [CTAAACTTTG] 174 (85.25)
7 - [AAAAACAGCA] 182 (87.42)
7 - [AAAAAGGGAA] 150 (86.95)
7 - [AATAATAGCG] 128 (85.63)
7 - .CGAAATGGAA. 120 (90.61)
7 - [ATTAAAGGCG] 111 (85.99)
7 - [CGGAAAAGTA] 27 (87.23)
8 + .CGTGTGGGCG. 111 (91.21)
8 + .CGAAAGGGCG. 124 (100.00)
8 + .CAAGAAAGTG. 143 (91.28)
8 + .AGAAAGTGTG. 145 (93.04)
8 + [AAAGTGTGCG] 147 (88.19)
8 - [AGAGTGTTCG] 60 (88.19)
9 + .CGAGTGTGCG. 103 (94.77)
9 - [GAAAAAATCG] 185 (86.55)
9 - [CGAAAATTTA] 175 (87.12)
9 - [AAAATGTTCG] 160 (85.43)
9 - [GAAAAGAGAA] 151 (85.16)
9 - [AGAGAAAAAG] 147 (87.23)
9 - [AATAATGGCG] 130 (85.63)
9 - [ATTAAAGGCG] 111 (85.99)
9 - [AGAGAATTCA] 26 (86.02)
10 + .CGAGTGGGAG. 111 (93.36)
10 + .CGAAAGGGCG. 124 (100.00)
10 + [AGAGACAGTA] 140 (87.45)
10 + [AGTGTGAGTG] 153 (85.57)
10 - [AGAATGAGTA] 214 (87.61)
10 - .CGAGAGAGTG. 89 (96.37)
10 - .CGAGTGTTCG. 60 (91.10)
11 + .CGAAAAAGCG. 19 (98.58)
11 + [CGTATTTGAG] 55 (85.16)
12 + [CAAGAGAGAA] 77 (88.96)
12 + .CGAAATTGCA. 176 (92.02)
12 - [AAAAATTGCA] 152 (85.44)
12 - [CAAAAATTTG] 144 (87.21)
12 - .CGGGAGAGCG. 27 (94.21)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 3 | 18 | 1 | 0 | | | | 8 | 20 | 0 | 0 |
2 | | 2 | 0 | 19 | 1 | | | | 3 | 0 | 24 | 1 |
3 | | 20 | 0 | 1 | 1 | | | | 26 | 0 | 1 | 1 |
4 | | 14 | 0 | 8 | 0 | | | | 15 | 0 | 13 | 0 |
5 | | 19 | 0 | 0 | 3 | | | | 23 | 0 | 0 | 5 |
6 | | 5 | 3 | 12 | 2 | | | | 6 | 2 | 16 | 4 |
7 | | 9 | 0 | 9 | 4 | | | | 15 | 0 | 8 | 5 |
8 | | 1 | 0 | 19 | 2 | | | | 1 | 0 | 24 | 3 |
9 | | 3 | 16 | 0 | 3 | | | | 6 | 17 | 0 | 5 |
10 | | 2 | 0 | 20 | 0 | | | | 3 | 0 | 25 | 0 |
CGCGTAACCGTA
TACGGTTACGCG
3 redundant motifs found:
ACGCGTAACCGT - CGTAACCGTA - GCGTAACCGT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .CGCGAAAAATTA. 15 (91.49)
1 - [GGCGCAAGCGAA] 103 (89.89)
1 - .AGCGAAACCGTA. 97 (93.55)
3 - [CACGCTACTTTA] 125 (86.04)
4 + [CAATTACGCGTA] 355 (87.08)
4 + .CGCGTAACCGTA. 361 (100.00)
4 - .CGGTTACGCGTA. 359 (94.11)
4 - .CGCGTAATTGAA. 353 (95.72)
4 - .CGCTTTTTCGTA. 331 (94.39)
4 - .CGGTTGACAGTA. 97 (93.80)
5 + .CGAGAGATCGTA. 121 (92.06)
5 + [CAATTACGCGTA] 355 (87.08)
5 + .CGCGTAACCGTA. 361 (100.00)
5 - .CGGTTACGCGTA. 359 (94.11)
5 - .CGCGTAATTGAA. 353 (95.72)
5 - .CGCTTTTTCGTA. 331 (94.39)
5 - .CGGTTGACAGTA. 97 (93.80)
6 + [TGCTAAAATTTA] 163 (86.92)
6 - [TGCGTGAACTTA] 124 (89.81)
7 - [AGCGAAATGGAA] 120 (87.18)
9 - .CGCGAAAATTTA. 175 (91.92)
9 - .CACTCGACCGTA. 97 (90.86)
10 + [AGAGAGACAGTA] 138 (85.48)
11 + [CAATTACGCGTA] 41 (87.08)
11 + .CGCGTAACCGTA. 47 (100.00)
11 - .CGGTTACGCGTA. 45 (94.11)
11 - .CGCGTAATTGAA. 39 (95.72)
11 - .CGCTTTTTCGTA. 17 (94.39)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 1 | 19 | 1 | 1 | | | | 1 | 18 | 0 | 0 |
2 | | 1 | 0 | 21 | 0 | | | | 1 | 0 | 18 | 0 |
3 | | 1 | 16 | 5 | 0 | | | | 1 | 13 | 5 | 0 |
4 | | 0 | 0 | 13 | 9 | | | | 0 | 0 | 10 | 9 |
5 | | 4 | 3 | 0 | 15 | | | | 4 | 1 | 0 | 14 |
6 | | 14 | 0 | 5 | 3 | | | | 12 | 0 | 4 | 3 |
7 | | 16 | 3 | 0 | 3 | | | | 13 | 3 | 0 | 3 |
8 | | 3 | 8 | 4 | 7 | | | | 2 | 7 | 3 | 7 |
9 | | 3 | 14 | 1 | 4 | | | | 3 | 12 | 0 | 4 |
10 | | 1 | 0 | 18 | 3 | | | | 0 | 0 | 17 | 2 |
11 | | 4 | 1 | 0 | 17 | | | | 3 | 0 | 0 | 16 |
12 | | 22 | 0 | 0 | 0 | | | | 19 | 0 | 0 | 0 |
GCGCCT
AGGCGC
3 redundant motifs found:
GCGCCTTT - TGCGCC - CGCCTT -
Best occurrences (match percentage):
Seq St oligo pos match
1 + .GCGCCT. 110 (100.00)
1 + .GGGCCT. 141 (94.34)
1 + [TGGCCT] 169 (86.85)
1 + .GCGCCG. 180 (92.63)
1 - .GCGCAT. 178 (96.44)
1 - [GGGTCT] 79 (88.93)
1 - [TCGCCG] 74 (85.14)
1 - [TCGCGT] 14 (85.54)
2 + [GCGTCG] 179 (87.23)
2 + [TCGTCT] 227 (87.11)
2 - .GCTCAT. 175 (90.78)
2 - .GCTCCT. 116 (94.34)
3 + [GCGCGC] 11 (85.66)
3 + [GGGTCT] 39 (88.93)
3 + .GCGCCT. 61 (100.00)
3 + [GGGAAT] 80 (85.37)
3 + [GCGTGT] 132 (87.63)
3 - [GCTACT] 128 (88.93)
3 - [GCGCAC] 59 (89.07)
3 - [GCGCGC] 11 (85.66)
3 - .GCGCCC. 9 (92.63)
4 - [GCGTCG] 174 (87.23)
4 - [TCGACT] 171 (87.11)
4 - .GCTCAT. 116 (90.78)
4 - [GGGCCG] 54 (86.97)
4 - [GCTACT] 31 (88.93)
5 - [TCGACT] 231 (87.11)
5 - [GCGTCG] 174 (87.23)
5 - [TCGACT] 171 (87.11)
5 - [GGGCCG] 53 (86.97)
5 - [GCTACT] 29 (88.93)
6 + [GCGCGC] 11 (85.66)
6 + [GCGCGG] 13 (85.66)
6 + [GGGTCT] 40 (88.93)
6 + .GCGCCT. 61 (100.00)
6 + [TCTCCT] 94 (86.85)
6 - .GCGCAT. 59 (96.44)
6 - [GCGCGC] 11 (85.66)
7 + .GCGCCT. 110 (100.00)
7 + .GGGCCT. 141 (94.34)
7 + [TGGCCT] 170 (86.85)
7 - .GCGCAT. 108 (96.44)
7 - [GGGTCT] 79 (88.93)
7 - [TCTCCT] 41 (86.85)
8 + .GCGTCT. 80 (94.60)
8 + .GCGACT. 171 (94.60)
8 + [GGGAAT] 187 (85.37)
8 - [GCTCCG] 119 (86.97)
9 + .GCGCCT. 110 (100.00)
9 + [TGGCCT] 170 (86.85)
9 - .GCGAAT. 127 (91.04)
9 - [GCGCAC] 108 (89.07)
9 - .TCGCCT. 89 (92.51)
9 - [GGGTCT] 80 (88.93)
9 - [TCGCCG] 75 (85.14)
9 - .GCGACT. 70 (94.60)
9 - [GGGCCG] 50 (86.97)
10 + [TCTCCT] 71 (86.85)
10 + .GCGTCT. 80 (94.60)
10 + [GGGTAT] 191 (85.37)
10 + [TCGTCT] 206 (87.11)
10 - .GCTCCT. 119 (94.34)
12 + [GCGCAC] 11 (89.07)
12 + [GGGTCT] 40 (88.93)
12 + .GCGCCT. 61 (100.00)
12 + [TCTCCT] 94 (86.85)
12 - .GCGCAT. 59 (96.44)
12 - .GCGCGT. 9 (93.03)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 0 | 0 | 21 | 1 | | | | 0 | 0 | 24 | 1 |
2 | | 0 | 20 | 2 | 0 | | | | 0 | 23 | 2 | 0 |
3 | | 0 | 0 | 20 | 2 | | | | 0 | 0 | 21 | 4 |
4 | | 2 | 18 | 0 | 2 | | | | 3 | 20 | 0 | 2 |
5 | | 4 | 17 | 1 | 0 | | | | 7 | 17 | 1 | 0 |
6 | | 0 | 1 | 1 | 20 | | | | 0 | 1 | 1 | 23 |
AGGAGCGAAAGG
CCTTTCGCTCCT
2 redundant motifs found:
GGAGCGAAAGGG - GAGCGAAAGG -
Best occurrences (match percentage):
Seq St oligo pos match
1 - .AAGAGAAAAAGG. 144 (95.44)
1 - [AATCGCGAAATG] 123 (89.87)
2 + .AGGAGCGAAAGG. 116 (100.00)
2 + [CAGAGAGAGAGA] 134 (87.25)
2 + [GAGATAGAGAGG] 148 (85.12)
2 + [GGGAGAGAGAAA] 158 (85.25)
2 + .GAGAGAGAAATG. 160 (91.66)
4 + [AGTAGCAAATGC] 31 (86.69)
4 + .ATGAGCGAGAGA. 116 (90.03)
4 - .AGGAAAGACATG. 296 (90.43)
5 + [AGTAGCAAATGC] 29 (86.69)
5 + [CTGAGCGAGAGA] 116 (86.56)
5 - .AGGAAAGACATG. 296 (90.43)
6 - [CGGTGAAAAATG] 134 (86.28)
6 - .AGGAGAGAGAAG. 88 (93.98)
7 - [AAGGGAAAAAAG] 145 (86.63)
7 - [AGGGAAAAAAGG] 144 (88.28)
7 - .AATAGCGAAATG. 123 (93.55)
8 + .CGGAGCGAAAGG. 119 (96.52)
8 - [ATGAGAGAGTTG] 88 (88.52)
8 - [GGGAGAAAATCG] 26 (85.49)
9 - .AAGAGAAAAAGG. 146 (95.44)
10 + .AGGAGCGAAAGG. 119 (100.00)
10 - [ACGAGAGAGTGG] 88 (88.03)
12 + .AAGAGAGAAAAG. 78 (94.58)
12 - [AGGAGAGAGACT] 88 (87.38)
Frequency Matrix | All Occs | | | Best Occs |
---|
| | A | C | G | T | | | A | C | G | T |
---|
1 | | 18 | 3 | 2 | 2 | | | | 10 | 1 | 1 | 0 |
2 | | 6 | 1 | 15 | 3 | | | | 5 | 0 | 6 | 1 |
3 | | 1 | 1 | 19 | 4 | | | | 0 | 0 | 11 | 1 |
4 | | 20 | 3 | 1 | 1 | | | | 12 | 0 | 0 | 0 |
5 | | 4 | 0 | 20 | 1 | | | | 2 | 0 | 10 | 0 |
6 | | 10 | 14 | 0 | 1 | | | | 7 | 5 | 0 | 0 |
7 | | 6 | 0 | 18 | 1 | | | | 2 | 0 | 10 | 0 |
8 | | 22 | 1 | 2 | 0 | | | | 12 | 0 | 0 | 0 |
9 | | 17 | 2 | 5 | 1 | | | | 8 | 2 | 2 | 0 |
10 | | 20 | 0 | 2 | 3 | | | | 12 | 0 | 0 | 0 |
11 | | 3 | 2 | 14 | 6 | | | | 2 | 0 | 6 | 4 |
12 | | 2 | 2 | 20 | 1 | | | | 1 | 0 | 11 | 0 |