Your Weeder Web Results

NEW: Starting a large job on file /tmp/motif_master/12051_WEEDER/mec3_t1_3_19.fa

Organism code: CE

Processing both strands

/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/12051_WEEDER/mec3_t1_3_19.fa CE large S


Searching for motifs of length 6 with 1 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12051_WEEDER/mec3_t1_3_19.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) CGCTGC 1.46
2) GGGCGG 1.39
3) CGGGGC 1.39
4) GCTGCG 1.37
5) AGGGCG 1.32
6) GGCGCG 1.30
7) CGTCGA 1.27
8) GCGCTG 1.25
9) CTGCGC 1.23
10) GCGCCG 1.22

Elapsed time : 0 min. 0 sec.


Searching for motifs of length 8 with 2 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12051_WEEDER/mec3_t1_3_19.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) GGTCGTGC 1.66
2) GCGCAGCG 1.60
3) CAGCGCTG 1.59
4) CGCGCAGC 1.53
5) CGCTGACG 1.46
6) CGGCGCGT 1.39
7) ACGACCGC 1.38
8) CTGCGCTG 1.35
9) AAGGGCGG 1.35
10) CGACGCAC 1.33

Elapsed time : 0 min. 5 sec.


Searching for motifs of length 10 with 3 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12051_WEEDER/mec3_t1_3_19.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) CCTCCCGCAC 1.76
2) GTGTGGGAGG 1.63
3) GGCACGACCC 1.60
4) CGCGCTGACG 1.54
5) CGCGCAGCGG 1.53
6) CGGCAGCCCC 1.51
7) GGCAGCCCCG 1.50
8) CGGCGCGTCG 1.44
9) CGGCGGGGCG 1.44
10) CTGACGGGTC 1.42

Elapsed time : 2 min. 0 sec.


Searching for motifs of length 12 with 4 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12051_WEEDER/mec3_t1_3_19.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) GGGGATGGGCGG 2.42
2) GCGCGTCGACTC 2.41
3) CGGCGGGGCGAA 2.40
4) GAGCGAGAGATC 2.37
5) GGCGGCGCGTCG 2.34
6) GCGGCGCGTCGA 2.34
7) GCAGCGGGCGGT 2.33
8) ATCGACGGCGAG 2.33
9) CGTGTGGGAGGA 2.32
10) AATCGACGGCGA 2.32

Elapsed time : 15 min. 22 sec.


Your sequences:

Sequence 1 : >ID1926163_Y48G8AL.8a_u2k_truncated
Sequence 2 : >ID1929342_F31C3.1_u2k_truncated
Sequence 3 : >ID1931660_C06A8.3_u2k_truncated
Sequence 4 : >ID1934657_B0336.11a_u2k_truncated
Sequence 5 : >ID1935092_F37C12.9_u2k_truncated
Sequence 6 : >ID1935354_D2007.2_u2k_truncated
Sequence 7 : >ID1935840_K03H1.4_u2k_truncated
Sequence 8 : >ID1937513_E04A4.8_u2k_truncated
Sequence 9 : >ID1938117_D2024.6_u2k_truncated
Sequence 10 : >ID1938323_F57H12.1_u2k_truncated
Sequence 11 : >ID1939832_Y45F10D.12_u2k_truncated
Sequence 12 : >ID1941055_F54E2.2_u2k_truncated
Sequence 13 : >ID1942149_T07H8.4a_u2k_truncated
Sequence 14 : >ID1944135_F58E10.4_u2k_truncated
Sequence 15 : >ID1946353_F52E4.1a_u2k_truncated
Sequence 16 : >ID1946741_M03F4.7a_u2k_truncated
Sequence 17 : >ID1946996_W05H9.1_u2k_truncated
Sequence 18 : >ID1948027_C03A3.3_u2k_truncated
Sequence 19 : >ID1948088_C35C5.5_u2k_truncated
Sequence 20 : >ID1948407_F46G10.6_u2k_truncated


**** MY ADVICE ****


*** Interesting motifs (highest-ranking) seem to be :


CGCTGC
GCAGCG

4 redundant motifs found:
GCGCAGCG - CTGCGC - GCGCTG - GCTGCG -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TGTTGC] 41 (86.10)
1 + .CGCGGC. 72 (90.36)
1 + .CGCTGC. 87 (100.00)
1 - .CGCAGC. 88 (93.96)
1 - .CGCCGC. 73 (90.36)
2 + [TACTGC] 67 (85.16)
2 + [CGCTGT] 72 (87.84)
3 - [CGCTCA] 176 (86.09)
3 - .CGCTCC. 117 (92.38)
3 - .CGCTGA. 54 (93.71)
3 - .CGCTGA. 22 (93.71)
4 - .TGCTGC. 14 (93.87)
5 + .GGCTGC. 89 (91.60)
5 + [CGTAGC] 94 (86.18)
5 - .CGCTAC. 95 (90.11)
5 - .CGCAGC. 90 (93.96)
6 + .CGCTGA. 59 (93.71)
6 + [TACTGC] 92 (85.16)
6 + .TGCTGC. 95 (93.87)
8 + .CGCTCC. 6 (92.38)
8 + .CGCTCC. 14 (92.38)
8 + .CACTGC. 78 (91.28)
8 + [CGTTGA] 100 (85.94)
8 - [TGTTGC] 65 (86.10)
9 - [CGCTTC] 14 (87.84)
10 + [GGCTGA] 105 (85.31)
10 + .CGTTGC. 181 (92.23)
11 + .CGCTCC. 27 (92.38)
11 - [CCCTGC] 204 (87.69)
11 - .CGCTAC. 129 (90.11)
11 - .CGTTGC. 46 (92.23)
11 - .CGTTGC. 15 (92.23)
12 + .CGCAGC. 30 (93.96)
12 - .CGCTGC. 31 (100.00)
13 + .CACTGC. 53 (91.28)
14 + .GGCTGC. 47 (91.60)
14 + .TGCTGC. 50 (93.87)
14 + .CGCTGA. 124 (93.71)
14 + .CGCAGC. 154 (93.96)
14 + .CGCTGA. 159 (93.71)
14 - .CGCTGC. 155 (100.00)
14 - .CGCAGC. 51 (93.96)
14 - .CGTTGC. 42 (92.23)
15 + .CGCTGC. 37 (100.00)
15 + [CACAGC] 63 (85.24)
15 - [TGCAGC] 38 (87.83)
15 - [CGCAGA] 31 (87.67)
16 + .TGCTGC. 77 (93.87)
16 + .TGCTGC. 180 (93.87)
16 + [CTCTGC] 206 (87.69)
16 + [GGCAGC] 223 (85.56)
16 + [CGGTGC] 435 (87.69)
16 - .TGCTGC. 290 (93.87)
16 - .GGCTGC. 224 (91.60)
16 - .CGCAGC. 181 (93.96)
16 - [TGCAGC] 78 (87.83)
16 - [CACAGC] 37 (85.24)
18 + [GGCAGC] 9 (85.56)
18 + .CACTGC. 146 (91.28)
18 - [TACTGC] 159 (85.16)
18 - [CGCTCA] 117 (86.09)
18 - [TACTGC] 29 (85.16)
18 - .CGCTGC. 10 (100.00)
19 + [CGCACC] 28 (86.34)
19 + .CGCGGC. 60 (90.36)
20 + [TGCTCC] 26 (86.25)
20 + [GGCTGA] 102 (85.31)
20 + .CGCTGA. 123 (93.71)
20 - .CGCCGC. 142 (90.36)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 39 3 6| 0 34 3 6
2 3 1 43 1| 3 0 40 0
3 0 43 1 4| 0 39 0 4
4 6 2 2 38| 6 2 2 33
5 2 4 41 1| 2 4 37 0
6 6 41 0 1| 6 37 0 0






GGTCGTGC
GCACGACC

1 redundant motifs found:
GGCACGACCC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [GATCGCGG] 69 (89.52)
1 + [GGTTTCGC] 100 (86.50)
1 + [GCTTGCGC] 106 (85.74)
1 - [CGTAGTCC] 93 (85.43)
1 - .GGTCTCGC. 76 (92.69)
1 - [GATCTTGT] 65 (87.26)
2 + [GGTCAAGG] 8 (87.01)
2 - .GGTGGTGG. 105 (92.93)
2 - .GGTAGTGT. 99 (91.42)
4 - .GATGGTGC. 72 (92.30)
4 - [GTGAGTGC] 17 (85.76)
4 - .GCTCATGC. 8 (90.29)
6 + .GGTCGTGC. 24 (100.00)
7 + .GGTCGTCG. 32 (92.58)
8 + [GGTTTTCC] 117 (85.65)
8 - [GGCAGTGC] 77 (89.68)
8 - [GGGAGCGG] 13 (85.51)
8 - .GGTGGAGC. 7 (91.42)
10 + [GGGCGCGT] 92 (87.78)
10 + .GGTCTCGC. 113 (92.69)
10 + [GCTATTGC] 185 (87.39)
10 - .TGTCGTCC. 160 (90.73)
10 - .GATCGTGG. 120 (92.81)
11 + .GGGCGCGC. 9 (92.58)
11 + .GGTCTCGC. 40 (92.69)
11 - [TGTCGTTG] 16 (85.05)
12 + [GGGCTTCC] 91 (87.69)
13 - [GGCAGTGG] 52 (86.39)
13 - .GGTCGTGC. 45 (100.00)
14 + .GGTCGTGC. 36 (100.00)
14 + [GCTCGTCT] 96 (86.27)
14 + [CGTCTTCC] 99 (85.19)
14 - .GCGCGTGC. 119 (91.06)
15 + [TGTCACGC] 54 (86.67)
15 - .TGTAGTGC. 75 (91.08)
16 + [GGGCGTCT] 375 (86.92)
16 + [TGTCTTCC] 399 (86.70)
16 + [GACGGTGC] 433 (85.76)
16 - .GGTCAAGC. 460 (90.29)
16 - [GCTCACGC] 284 (87.01)
16 - .CGTCGTGC. 81 (93.35)
16 - [TGTCGTCT] 29 (85.93)
17 + [GGTGGCTC] 76 (86.39)
18 + .GATCGTGT. 126 (91.29)
18 - [GGTTACGC] 362 (85.62)
18 - [GTTTGTGC] 344 (87.51)
19 - [GCTAGTGG] 87 (88.14)
19 - .GGTCGTCG. 21 (92.58)
20 + [GGCGGCGC] 141 (86.39)
20 - [GGGCGTTC] 175 (89.32)
20 - [GTGGGTGC] 91 (85.76)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 1 21 2| 0 1 18 2
2 3 2 18 1| 3 2 16 0
3 0 1 3 20| 0 0 2 19
4 3 17 3 1| 2 16 3 0
5 2 0 19 3| 2 0 16 3
6 2 4 0 18| 2 4 0 15
7 0 3 20 1| 0 3 18 0
8 0 18 4 2| 0 15 4 2






CCTCCCGCAC
GTGCGGGAGG

0 redundant motifs found:


Best occurrences (match percentage):
Seq St oligo pos match
2 + .CCTCCCCCCC. 41 (92.59)
2 + [CCCCCCCCTC] 44 (85.98)
2 + [ACTCACTCAC] 199 (89.22)
3 + [CATCCCTCAT] 214 (86.28)
3 - .TCTCCCTCTC. 154 (90.60)
3 - [TCTCTCTCTC] 136 (85.49)
3 - [CCTTTCGCTC] 118 (86.32)
3 - .CCTCCCACAC. 109 (96.45)
4 + [ACTCACACTC] 40 (86.23)
4 + .CCGCCAGCAC. 66 (90.29)
8 + [ACTGCCGCAT] 79 (87.10)
12 - [CCTACCGCCC] 36 (90.00)
12 - [CCGCCCGCTG] 32 (85.17)
13 - .CCTCCCACAC. 106 (96.45)
13 - [ATTCCCGCCC] 24 (86.35)
16 + [ACTGCTGCAC] 75 (85.21)
16 + [CCGCCCTCCC] 137 (88.68)
16 + .CCTCCCGCAT. 141 (95.63)
16 + [TCTCTCTCTC] 264 (85.49)
16 + [TCTCTCTCTC] 266 (85.49)
18 + .CCTCCCGCAC. 305 (100.00)
18 - [TCTCTCGCTC] 118 (88.48)
19 + [ACGACCGCAC] 23 (85.94)
19 - [ACTGCCCCTC] 8 (85.49)
20 + [CCTTCTGCTC] 21 (85.17)
20 + [CCTCCCTTTC] 156 (86.15)
20 - .CCTCCAACAC. 133 (91.22)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 5 19 1 4| 0 7 0 1
2 2 24 1 2| 0 8 0 0
3 1 1 4 23| 0 0 1 7
4 2 22 3 2| 0 8 0 0
5 4 22 0 3| 0 8 0 0
6 3 23 1 2| 2 6 0 0
7 4 4 16 5| 3 1 3 1
8 1 27 0 1| 0 8 0 0
9 18 4 0 7| 6 1 0 1
10 2 22 1 4| 0 7 0 1






GGGGATGGGCGG
CCGCCCATCCCC

0 redundant motifs found:


Best occurrences (match percentage):
Seq St oligo pos match
1 - [GGGGAGAGGCAA] 43 (85.87)
2 - [AGGGGGGGGAGG] 41 (87.87)
2 - [GGGGAGGTGAAG] 36 (88.11)
3 - [AGGGATGTCCAG] 209 (85.04)
8 - [GGGGAGCGGTGG] 10 (86.79)
13 + .GGGGATGGGCGG. 18 (100.00)
15 - [AGGGATGTGAGG] 18 (89.22)
18 - [GGGGTTGGGGAG] 248 (86.00)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 5 3 14 3| 0 0 1 0
2 5 2 17 1| 0 0 1 0
3 3 1 20 1| 0 0 1 0
4 3 3 18 1| 0 0 1 0
5 20 1 3 1| 1 0 0 0
6 2 3 8 12| 0 0 0 1
7 3 1 21 0| 0 0 1 0
8 3 1 18 3| 0 0 1 0
9 2 3 18 2| 0 0 1 0
10 4 14 4 3| 0 1 0 0
11 6 1 17 1| 0 0 1 0
12 3 1 21 0| 0 0 1 0





*** Interesting motifs (not highest-ranking) can also be :


GCGCAGCG
CGCTGCGC

5 redundant motifs found:
CGCGCAGCGG - CGCGCAGC - CTGCGC - GCTGCG - CGCTGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TCGCGGCG] 71 (89.23)
1 + [TCGCTGCG] 86 (89.23)
1 - [CCGCAGCG] 87 (89.90)
1 - [TCGCCGCG] 72 (89.23)
2 - [GCGCAGTA] 67 (87.23)
3 + [GAGGAGCG] 115 (87.80)
4 + [GAGCAGCA] 12 (89.16)
5 + [GCGGGGCG] 45 (87.37)
5 + [GCGTAGCG] 93 (86.80)
6 - [GAGCAGCA] 95 (89.16)
6 - .GCTCAGCG. 59 (90.46)
8 - [GGGGAGCG] 14 (85.25)
8 - [GTGGAGCG] 6 (86.31)
11 + .GCGCAACG. 13 (90.37)
11 + [TCGCAACG] 44 (86.20)
11 - [GCGGAGTG] 22 (85.87)
12 + .GCGCAGCG. 29 (100.00)
14 + .TCGCAGCG. 153 (95.83)
14 + [GCGCTGAG] 158 (85.30)
14 - [TCTCAGCG] 159 (86.29)
14 - .GCGCTGCG. 154 (93.40)
14 - .TCGCAGCA. 50 (91.16)
15 + [GCGCTGCA] 36 (88.73)
15 - [TTGCAGCG] 37 (88.17)
15 - [GCGCAGAA] 30 (87.23)
16 + [GAGCAGCA] 288 (89.16)
16 - [GAGCAGAG] 206 (85.74)
16 - [ACGCAGCA] 180 (85.23)
16 - [GTGCAGCA] 77 (87.67)
18 + [TGGCAGCG] 8 (87.11)
18 - [TCGCAGTG] 146 (87.74)
19 - [GAGCCGCG] 60 (87.23)
20 + [GCGGCGCG] 142 (87.37)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 2 2 31 10| 0 0 4 2
2 6 32 3 4| 0 6 0 0
3 1 1 40 3| 0 0 5 1
4 1 36 7 1| 0 6 0 0
5 30 5 5 5| 5 0 0 1
6 3 0 41 1| 1 0 5 0
7 4 36 1 4| 0 6 0 0
8 9 2 32 2| 1 0 5 0






GGGCGG
CCGCCC

2 redundant motifs found:
AAGGGCGG - AGGGCG -

Best occurrences (match percentage):
Seq St oligo pos match
2 - .AGGCGG. 121 (90.78)
2 - [GGGTGG] 108 (85.07)
2 - [GGGGGG] 46 (89.80)
2 - [GGGGGG] 45 (89.80)
2 - [GGGGGG] 44 (89.80)
2 - .GGGAGG. 41 (93.45)
3 + .GGGAGG. 113 (93.45)
3 + .GGGCGG. 126 (100.00)
4 - [TGGCGG] 66 (87.79)
5 + [CGGCGG] 43 (89.54)
6 - [CGGCGG] 40 (89.54)
8 - [GAGCGG] 13 (87.43)
10 + .GGGAGG. 88 (93.45)
10 + [GGGCGC] 92 (87.31)
11 + [GGGCGC] 9 (87.31)
11 - [GAGCGG] 26 (87.43)
12 + .GGGCGG. 36 (100.00)
12 + [GCGCGG] 86 (87.43)
13 + .GGGCGG. 24 (100.00)
13 + .GGGAGG. 110 (93.45)
14 + [GGACGG] 188 (86.99)
15 - [GGACGG] 6 (86.99)
16 + .AGGCGG. 23 (90.78)
16 + [TGGCGG] 324 (87.79)
16 + [GGGCGT] 375 (87.31)
16 + [GGGCTG] 395 (87.20)
16 - [GGGCTG] 225 (87.20)
16 - .GGGAGG. 141 (93.45)
16 - .GGGCGG. 137 (100.00)
16 - .AGGCGG. 131 (90.78)
17 + .GGGCGG. 18 (100.00)
18 + [CGGCGG] 51 (89.54)
18 - [GTGCGG] 309 (87.43)
18 - .GGGAGG. 305 (93.45)
19 + [GCGCGG] 59 (87.43)
19 - [GTGCGG] 27 (87.43)
20 + .GGGCGG. 39 (100.00)
20 + .AGGCGG. 140 (90.78)
20 - [GGGCGT] 177 (87.31)
20 - .GGGAGG. 156 (93.45)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 4 3 34 2| 4 0 13 0
2 2 2 37 2| 0 0 17 0
3 2 0 41 0| 0 0 17 0
4 7 32 3 1| 7 10 0 0
5 1 1 39 2| 0 0 17 0
6 1 2 38 2| 0 0 17 0






CAGCGCTG
CAGCGCTG

2 redundant motifs found:
CTGCGCTG - GCGCTG -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .CATCGCTG. 84 (90.77)
1 - .CAGCGATG. 84 (90.77)
2 + .CTGCGCTG. 69 (91.09)
2 - .CAGCGCAG. 69 (91.09)
14 + .CAGCGCTG. 156 (100.00)
14 - .CAGCGCTG. 156 (100.00)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 3 27 3 1| 0 6 0 0
2 25 3 3 3| 5 0 0 1
3 1 3 27 3| 0 0 5 1
4 3 27 1 3| 0 6 0 0
5 3 1 27 3| 0 0 6 0
6 3 27 3 1| 1 5 0 0
7 3 3 3 25| 1 0 0 5
8 1 3 27 3| 0 0 6 0






GCTGCG
CGCAGC

4 redundant motifs found:
CGCGCAGC - GCGCAGCG - CTGCGC - CGCTGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .GCGGCG. 73 (90.86)
1 + .GCTGCG. 88 (100.00)
1 - .GCAGCG. 87 (93.99)
1 - .GCCGCG. 72 (90.86)
2 + .ACTGCG. 68 (90.22)
4 - .GCTGCT. 13 (93.11)
5 + .GCTGCG. 90 (100.00)
5 + [GTAGCG] 95 (85.69)
5 - [GCTACG] 94 (87.85)
6 + .GCTGAG. 60 (91.80)
6 + .GCTGCT. 96 (93.11)
8 - .GTTGCG. 64 (91.70)
11 + [GTAGCG] 129 (85.69)
11 - .GTTGCG. 45 (91.70)
11 - .GTTGCG. 14 (91.70)
12 + .GCAGCG. 31 (93.99)
12 - .GCTGCG. 30 (100.00)
13 + [GCTTCG] 92 (87.85)
14 + .GCTGCT. 48 (93.11)
14 + .GCTGCG. 51 (100.00)
14 + .GCAGCG. 155 (93.99)
14 + .GCTGAG. 160 (91.80)
14 - .GCTGCG. 154 (100.00)
15 + [TCTGCG] 31 (87.85)
15 + .GCTGCA. 38 (90.74)
15 - .GCTGTG. 63 (90.42)
15 - .GCAGCG. 37 (93.99)
16 + .GCTGTG. 37 (90.42)
16 + .GCTGCA. 78 (90.74)
16 + .GCTGCG. 181 (100.00)
16 - .GCTGCT. 289 (93.11)
16 - .GCTGCC. 223 (90.74)
16 - [GCAGAG] 206 (85.79)
18 + .GCAGCG. 10 (93.99)
18 + .ACTGCG. 147 (90.22)
18 - .GCTGCC. 9 (90.74)
19 - .GCCGCG. 60 (90.86)
19 - [GGTGCG] 28 (87.94)
20 + .GCTGAG. 103 (91.80)
20 + .GCGGCG. 142 (90.86)
20 - [GCTCCG] 42 (87.85)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 2 0 35 1| 2 0 31 0
2 0 34 1 3| 0 30 0 3
3 5 2 2 29| 5 2 2 24
4 1 1 35 1| 0 0 33 0
5 3 33 0 2| 3 28 0 2
6 2 2 30 4| 2 2 25 4






CGCGCAGC
GCTGCGCG

4 redundant motifs found:
CGCGCAGCGG - GCGCAGCG - CTGCGC - GCTGCG -

Best occurrences (match percentage):
Seq St oligo pos match
1 - [CTCGCCGC] 73 (86.58)
4 + [TGAGCAGC] 11 (87.87)
5 + [TGCGTAGC] 92 (86.94)
5 - [TACGCAGC] 90 (87.05)
5 - [CGCCCCGC] 45 (85.44)
6 + [CGAGCCGC] 54 (86.58)
6 - [TGCTCAGC] 60 (85.67)
8 + [CACGCAAC] 62 (85.64)
11 + .CGCGCAAC. 12 (93.57)
11 + [CTCGCAAC] 43 (86.47)
12 + .CGCGCAGC. 28 (100.00)
12 - [CGCGCCTC] 83 (85.75)
12 - [CGCGTAAC] 24 (85.53)
14 + [TTCGCAGC] 152 (87.87)
14 - [TTCGCAGC] 51 (87.87)
15 + .CGCGCTGC. 35 (92.18)
15 - .CGCGCAGA. 31 (90.49)
16 + [TGAGCAGC] 287 (87.87)
16 - .CGTGCAGC. 78 (91.00)
18 + [CGCGTAAC] 361 (85.53)
20 - .CGCGCCGC. 142 (93.68)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 3 31 3 8| 0 6 0 0
2 4 2 34 5| 0 0 6 0
3 5 34 3 3| 0 5 0 1
4 1 4 37 3| 0 0 6 0
5 2 35 4 4| 0 6 0 0
6 33 6 2 4| 4 1 0 1
7 6 1 34 4| 1 0 5 0
8 3 39 0 3| 1 5 0 0






CGCGCTGACG
CGTCAGCGCG

2 redundant motifs found:
CGCGCAGCGG - CGCTGACG -

Best occurrences (match percentage):
Seq St oligo pos match
2 + [TGCGCTGTTG] 70 (85.90)
3 - [TTCGCTGAAG] 52 (87.54)
4 + [CTCACTGAAG] 20 (88.73)
5 - .CGCCCCGCCG. 43 (90.85)
5 - .CCCGCCGACG. 40 (91.30)
6 + [GTCACCGCCG] 36 (85.24)
6 - [GGCGGTGACT] 35 (86.04)
7 - [CTCTCTGTCG] 72 (85.29)
8 + [AGCACTGCCG] 76 (89.17)
8 - .CTCGCCGTCG. 28 (90.24)
10 + .CTGGCTGACG. 103 (91.84)
12 + [CGCGCAGCGG] 28 (88.60)
13 + [CCCACTGCCG] 51 (88.90)
14 + .CGCGCTGACG. 122 (100.00)
15 + [CGCGCTGCAA] 35 (89.37)
15 - [CGCGCAGAAA] 29 (87.24)
16 + [GGCGGAGACG] 24 (86.33)
16 + [CGCCCTCCCG] 138 (85.08)
16 + [GGCACTGACC] 236 (87.33)
16 - [CGGACAGACG] 378 (88.21)
16 - .GGGGCTGCCG. 222 (90.48)
18 - [GGGGCCGCCG] 51 (87.77)
19 - [CGCGCCGATT] 54 (87.24)
20 + [CACGCTGACC] 121 (86.34)
20 - .CGCGCCGCCT. 140 (91.60)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 2 18 5 3| 0 6 1 0
2 1 2 20 5| 0 1 4 2
3 0 23 4 1| 0 5 2 0
4 5 3 19 1| 0 1 6 0
5 0 25 2 1| 0 7 0 0
6 4 6 1 17| 0 4 0 3
7 0 1 26 1| 0 0 7 0
8 15 8 1 4| 3 3 0 1
9 4 20 2 2| 0 7 0 0
10 3 2 19 4| 0 0 6 1






AGGGCG
CGCCCT

3 redundant motifs found:
AAGGGCGG - GGCGCG - GGGCGG -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [GCGGCG] 73 (86.61)
1 - .ACGGCG. 181 (94.30)
1 - .AAGGCG. 111 (92.19)
1 - [GGGGAG] 49 (85.98)
2 - .AGGGTG. 191 (94.55)
2 - [AAGGTG] 157 (86.74)
2 - [GGGGTG] 109 (86.86)
2 - [ACAGCG] 72 (86.27)
2 - .AGGGGG. 47 (90.33)
2 - [GGGGAG] 42 (85.98)
3 + [TGGGAG] 112 (87.22)
3 + .AGGGCG. 125 (100.00)
3 + [AGAGAG] 135 (85.64)
3 + [AGAGAG] 137 (85.64)
3 + [AGAGAG] 139 (85.64)
3 + [AGAGAG] 153 (85.64)
3 + .AGGGAG. 157 (93.67)
3 + [AGAGAG] 161 (85.64)
3 + [TGAGCG] 176 (85.51)
3 - [AGAGAG] 72 (85.64)
4 + [GGGGAG] 29 (85.98)
5 + [TCGGCG] 42 (87.85)
5 + .GGGGCG. 47 (92.31)
6 - [AGCGAG] 107 (85.64)
6 - .ACGGCG. 41 (94.30)
6 - [AGGGCA] 29 (89.55)
7 + [AGGTCG] 31 (89.65)
7 + [AGAGAG] 76 (85.64)
7 + [AGAGAG] 78 (85.64)
8 + .ACGGCG. 30 (94.30)
8 - [GGGGAG] 16 (85.98)
9 + [AGAGTG] 36 (86.51)
10 + .AGGGAG. 87 (93.67)
10 + .AGGGCG. 91 (100.00)
11 + .AGGGCG. 8 (100.00)
11 + [AGCGTG] 131 (86.51)
11 - .AAGGCG. 62 (92.19)
11 - [TGCGCG] 12 (85.51)
12 + .CGGGCG. 35 (92.31)
12 + [ACGGTG] 78 (88.85)
12 - [TGCGCG] 28 (85.51)
13 + .TGGGCG. 23 (93.55)
13 + .AGAGCG. 98 (91.97)
13 + [TGGGAG] 109 (87.22)
13 - [TGCGCG] 73 (85.51)
14 - .AGCGCG. 122 (91.97)
15 + [TGCGCG] 33 (85.51)
15 - .AGCGCG. 35 (91.97)
15 - [AGGACG] 7 (89.65)
16 + [CGGGTG] 327 (86.86)
16 + .CGGGCG. 374 (92.31)
16 + [ACGGTG] 434 (88.85)
16 - [AAGGAG] 363 (85.86)
16 - [AGAGAG] 269 (85.64)
16 - [AGAGAG] 267 (85.64)
16 - [AGAGAG] 265 (85.64)
16 - [AGAGAG] 204 (85.64)
16 - [CGGGAG] 188 (85.98)
16 - [CGGGAG] 142 (85.98)
16 - .AGGGCG. 138 (100.00)
16 - [AGAGAG] 107 (85.64)
17 + .TGGGCG. 17 (93.55)
18 + .ACGGCG. 50 (94.30)
18 + [TGAGCG] 117 (85.51)
18 + [AGCGAG] 119 (85.64)
18 + [AGCGAG] 339 (85.64)
18 - [CGGGAG] 306 (85.98)
18 - [GGGGAG] 248 (85.98)
19 + [TCGGCG] 56 (87.85)
19 - .AGGGTG. 128 (94.55)
20 + .TGGGCG. 38 (93.55)
20 + .AGAGCG. 65 (91.97)
20 + [ACCGCG] 128 (86.27)
20 + [GCGGCG] 142 (86.61)
20 - .AGGGTG. 233 (94.55)
20 - .GGGGCG. 178 (92.31)
20 - .AGGGAG. 157 (93.67)
20 - [AGCGTG] 121 (86.51)
20 - [TGGGTG] 92 (88.09)
20 - .AGGGTG. 84 (94.55)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 25 2 2 3| 22 2 2 3
2 2 4 26 0| 2 4 23 0
3 2 2 28 0| 2 2 25 0
4 1 0 30 1| 0 0 29 0
5 3 24 1 4| 3 21 1 4
6 1 0 31 0| 0 0 29 0






CGCGCAGCGG
CCGCTGCGCG

3 redundant motifs found:
CGCGCTGACG - CGCGCAGC - GCGCAGCG -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [CGCGGCGAGA] 72 (86.46)
1 + .ATCGCTGCGG. 85 (92.02)
1 - .TCCGCAGCGA. 86 (92.94)
1 - .CTCGCCGCGA. 71 (93.31)
1 - [CGGGGAGAGG] 46 (88.30)
2 - [AGCGCAGTAA] 66 (88.06)
3 - [TTCGCTGAAG] 52 (85.84)
4 + [TGAGCAGCAC] 11 (86.12)
5 + [TTGGCTGCGT] 87 (85.65)
5 + .TGCGTAGCGA. 92 (90.98)
5 - [CGCCCCGCCG] 43 (87.53)
5 - [CCCGCCGACG] 40 (86.80)
6 + [CGAGCCGCTG] 54 (86.61)
6 + [CGCTGAGCAA] 59 (86.12)
6 - [AGAGCAGCAG] 94 (89.83)
6 - .TGCTCAGCGG. 58 (92.37)
8 + [CGCTCCACCG] 6 (85.33)
8 - [CTCGCCGTCG] 28 (86.80)
8 - .CGGGGAGCGG. 13 (92.37)
10 + [CTGGCTGACG] 103 (85.39)
10 + [CTCGCCACGA] 116 (89.72)
11 + .CGCGCAACGA. 12 (95.03)
11 + .CTCGCAACGA. 43 (92.84)
11 - [TTCGTTGCGA] 44 (86.12)
11 - [ATTGGAGCGG] 26 (85.23)
12 + .CGCGCAGCGG. 28 (100.00)
12 - .CCCGCTGCGC. 29 (90.17)
13 - [CCGGCAGTGG] 52 (89.45)
14 + .CGTGCAACGG. 39 (91.92)
14 + .CGCGCTGACG. 122 (90.26)
14 + .TTCGCAGCGC. 152 (90.98)
14 + [AGCGCTGAGA] 157 (88.76)
14 + [CGAGTAGCAA] 170 (86.59)
14 - [TTCTCAGCGC] 158 (86.02)
14 - .AGCGCTGCGA. 153 (92.83)
14 - .TTCGCAGCAG. 49 (92.58)
15 + .CGCGCTGCAA. 35 (93.39)
15 - [ATTGCAGCGC] 36 (86.04)
15 - .CGCGCAGAAA. 29 (91.98)
16 + [CTTGCTGCGT] 178 (86.48)
16 + [TGAGCAGCAA] 287 (88.89)
16 - [AGAGCAGAGA] 205 (86.93)
16 - .CGTGCAGCAG. 76 (92.94)
18 + .ATGGCAGCGG. 7 (92.02)
18 + [CGCGTAACCG] 361 (88.45)
18 - [ATCGCAGTGT] 145 (85.65)
18 - [CCTGCCACGG] 59 (85.80)
19 + [ATCGGCGCGG] 55 (86.61)
19 - [AGAGCCGCGC] 59 (85.12)
20 + [CCCACAGTGG] 94 (85.76)
20 - [CGCGCCGCCT] 140 (89.72)
20 - [CGGTCAGCGT] 122 (88.21)
20 - [CCCGGAGAAG] 74 (85.40)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 4 19 0 5| 3 11 0 5
2 0 4 18 6| 0 2 11 6
3 2 19 5 2| 0 15 2 2
4 1 1 24 2| 0 0 18 1
5 0 24 2 2| 0 17 1 1
6 19 4 0 5| 13 1 0 5
7 4 0 24 0| 3 0 16 0
8 3 23 0 2| 2 17 0 0
9 5 4 18 1| 4 1 14 0
10 8 2 16 2| 8 2 9 0






GCGGCGCGTCGA
TCGACGCGCCGC

2 redundant motifs found:
GGCGGCGCGTCG - CGGCGCGTCG -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [GCGGCGAGACCC] 73 (85.88)
3 + [GCGGCACAGAGA] 128 (87.68)
3 + [TATGAGCGTCGA] 174 (87.67)
5 + .TCGGCGGGGCGA. 42 (92.39)
5 + [GCTGCGTAGCGA] 90 (88.25)
6 - [TCAGCGGCTCGA] 53 (86.79)
11 - [GCGGAGTGTCGT] 18 (85.73)
12 + [GAGGCGCGGGGC] 83 (86.79)
12 - [GCTGCGCGTAAC] 24 (87.62)
14 + [GCAGCGCTGAGA] 155 (89.42)
14 - .TCAGCGCTGCGA. 153 (90.37)
14 - [GCTGCGAATCAA] 148 (86.86)
15 - .GCAGCGCGCAGA. 31 (92.24)
16 + [GCTGCACGACGG] 78 (86.07)
19 + [TCGGCGCGGCTC] 56 (88.34)
19 + [GCGGCTCTTCGG] 61 (85.73)
19 - [GAGCCGCGCCGA] 56 (89.28)
20 + .GCGGCGCGTCGA. 142 (100.00)
20 - [TCGACGCGCCGC] 142 (87.90)
20 - [GCGCCGCCTCCA] 137 (85.51)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 2 0 19 7| 0 0 2 2
2 4 22 2 0| 0 4 0 0
3 6 1 15 6| 2 0 2 0
4 3 3 22 0| 0 0 4 0
5 3 22 1 2| 0 4 0 0
6 3 1 22 2| 0 0 4 0
7 4 19 3 2| 0 3 1 0
8 4 2 19 3| 0 0 3 1
9 4 4 7 13| 0 1 2 1
10 5 21 2 0| 1 3 0 0
11 3 2 21 2| 0 0 4 0
12 19 5 2 2| 4 0 0 0