Your Weeder Web Results

NEW: Starting a large job on file /tmp/motif_master/12014_WEEDER/mec3_top20o_u2t_2_19.fa

Organism code: CE

Processing both strands

/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/12014_WEEDER/mec3_top20o_u2t_2_19.fa CE large S


Searching for motifs of length 6 with 1 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12014_WEEDER/mec3_top20o_u2t_2_19.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) ATTTTT 1.41
2) ATGCAT 1.17
3) CATCTT 0.65
4) CGGATG 0.62
5) AGATGA 0.59
6) GTCTTC 0.59
7) GGGCCC 0.58
8) TCCGGA 0.57
9) GGATGA 0.56
10) CTTCCT 0.56

Elapsed time : 0 min. 6 sec.


Searching for motifs of length 8 with 2 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12014_WEEDER/mec3_top20o_u2t_2_19.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) AATGCATT 1.30
2) ATCCGGAT 0.93
3) GAGATCTC 0.91
4) GTCTAGAC 0.88
5) TGGATCCA 0.88
6) AGACGTCT 0.88
7) ATCTAGAT 0.86
8) CATGCATG 0.86
9) TCCTAGGA 0.85
10) ATCATGAT 0.84

Elapsed time : 2 min. 3 sec.


Searching for motifs of length 10 with 3 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12014_WEEDER/mec3_top20o_u2t_2_19.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) ATGCATTTGT 0.94
2) TATGCATTTG 0.80
3) CATGCATTTG 0.77
4) CCTTCTTCGC 0.74
5) CATCCGGAGG 0.73
6) CCATGCATTT 0.71
7) TTCCTAGGAA 0.71
8) AAATGCATTT 0.71
9) TAATGCATTA 0.71
10) ACCCATGGGT 0.71

Elapsed time : -32 min. -9 sec.


Searching for motifs of length 12 with 4 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12014_WEEDER/mec3_top20o_u2t_2_19.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) AAAGAGAAGAAG 2.20
2) AAAAGAGAAGAA 2.04
3) AAGGAGAAGAGA 2.04
4) GAGATGAAGAGA 2.02
5) AAGAGAAGAAGA 2.02
6) AAGAGGAGAAGA 2.01
7) AAAGAGAAGAGA 2.01
8) GAAGAGAGAAGA 2.01
9) AATGAGAAGAAG 1.99
10) AAAAGGAGAAGA 1.98

Elapsed time : 21 min. 56 sec.


Your sequences:

Sequence 1 : >ID1926163_Y48G8AL.8a_u2k_truncated
Sequence 2 : >ID1931660_C06A8.3_u2k_truncated
Sequence 3 : >ID1931831_F14E5.4_u2k_truncated
Sequence 4 : >ID1933993_C44B11.3_u2k_truncated
Sequence 5 : >ID1935100_F37C12.12_u2k_truncated
Sequence 6 : >ID1936363_ZC482.5_u2k_truncated
Sequence 7 : >ID1938322_F57H12.2_u2k_truncated
Sequence 8 : >ID1938324_F57H12.7_u2k_truncated
Sequence 9 : >ID1938498_F42A9.9_u2k_truncated
Sequence 10 : >ID1939022_F01D4.6a_u2k_truncated
Sequence 11 : >ID1939832_Y45F10D.12_u2k_truncated
Sequence 12 : >ID1942531_F20D6.5_u2k_truncated
Sequence 13 : >ID1943041_C50H2.3_u2k_truncated
Sequence 14 : >ID1943871_F15B9.1_u2k_truncated
Sequence 15 : >ID1946256_T07D1.3_u2k_truncated
Sequence 16 : >ID1946591_C52B9.9_u2k_truncated
Sequence 17 : >ID1946593_C52B9.6_u2k_truncated
Sequence 18 : >ID1947327_ZK154.3_u2k_truncated
Sequence 19 : >ID1948027_C03A3.3_u2k_truncated
Sequence 20 : >ID1948964_T01C8.7_u2k_truncated
Sequence 21 : >ID1949408_cr01.sctg0.wum.271.1_u2k_tru
Sequence 22 : >ID1950002_cr01.sctg0.wum.845.1_u2k_tru
Sequence 23 : >ID1950004_cr01.sctg0.wum.847.1_u2k_tru
Sequence 24 : >ID1951680_cr01.sctg115.wum.12.1_u2k_tr
Sequence 25 : >ID1951892_cr01.sctg11.wum.12.1_u2k_tru
Sequence 26 : >ID1952053_cr01.sctg11.wum.158.1_u2k_tr
Sequence 27 : >ID1953625_cr01.sctg13.wum.195.1_u2k_tr
Sequence 28 : >ID1954240_cr01.sctg14.wum.64.1_u2k_tru
Sequence 29 : >ID1954423_cr01.sctg14.wum.232.2_u2k_tr
Sequence 30 : >ID1954425_cr01.sctg14.wum.234.1_u2k_tr
Sequence 31 : >ID1958467_cr01.sctg1.wum.874.1_u2k_tru
Sequence 32 : >ID1962647_cr01.sctg2.wum.628.1_u2k_tru
Sequence 33 : >ID1963986_cr01.sctg34.wum.75.1_u2k_tru
Sequence 34 : >ID1966062_cr01.sctg412.wum.3.1_u2k_tru
Sequence 35 : >ID1967367_cr01.sctg4.wum.81.1_u2k_trun
Sequence 36 : >ID1969175_cr01.sctg5.wum.40.1_u2k_trun
Sequence 37 : >ID1971250_cr01.sctg6.wum.394.1_u2k_tru
Sequence 38 : >ID1971906_cr01.sctg74.wum.24.1_u2k_tru
Sequence 39 : >ID1975249_cr01.sctg9.wum.412.1_u2k_tru
Sequence 40 : >ID1975285_cr01.sctg60.wum.13.1_u2k_tru
Sequence 41 : >ID1975988_CBG00675_u2k_truncated
Sequence 42 : >ID1978314_CBG03506_u2k_truncated
Sequence 43 : >ID1982139_CBG08386_u2k_truncated
Sequence 44 : >ID1982240_CBG08510_u2k_truncated
Sequence 45 : >ID1983005_CBG09481_u2k_truncated
Sequence 46 : >ID1984424_CBG11337_u2k_truncated
Sequence 47 : >ID1985761_CBG12955_u2k_truncated
Sequence 48 : >ID1986857_CBG14383_u2k_truncated
Sequence 49 : >ID1986859_CBG14385_u2k_truncated
Sequence 50 : >ID1987837_CBG15739_u2k_truncated
Sequence 51 : >ID1988207_CBG16250_u2k_truncated
Sequence 52 : >ID1988458_CBG16615_u2k_truncated
Sequence 53 : >ID1988581_CBG16786_u2k_truncated
Sequence 54 : >ID1988981_CBG17385_u2k_truncated
Sequence 55 : >ID1989234_CBG17726_u2k_truncated
Sequence 56 : >ID1989236_CBG17728_u2k_truncated
Sequence 57 : >ID1990586_CBG19401_u2k_truncated
Sequence 58 : >ID1991280_CBG20310_u2k_truncated
Sequence 59 : >ID1992898_CBG22372_u2k_truncated


**** MY ADVICE ****


*** Interesting motifs (highest-ranking) seem to be :


AATGCATT
AATGCATT

4 redundant motifs found:
AAATGCATTT - TAATGCATTA - CATGCATG - ATGCAT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATACATT. 196 (92.96)
1 + [AATTAATT] 463 (89.89)
1 - [AATTAATT] 463 (89.89)
1 - .AATGTATT. 196 (92.96)
2 + [ATTTCATT] 363 (85.29)
2 + [AATGAAAT] 611 (85.29)
2 + [ATTTCATT] 1137 (85.29)
2 + [AATTTATT] 1714 (87.90)
2 - [AATAAATT] 1714 (87.90)
2 - [AATGAAAT] 1137 (85.29)
2 - [ATTTCATT] 611 (85.29)
2 - [AATGAAAT] 363 (85.29)
3 + [CATGCATT] 328 (88.54)
3 + [ATTTCATT] 474 (85.29)
3 - [AATGAAAT] 474 (85.29)
3 - [AATGCATG] 328 (88.54)
4 + [AATTCATA] 333 (85.19)
4 + .AATACATT. 493 (92.96)
4 + .AATGCATT. 575 (100.00)
4 + [AATTAATT] 816 (89.89)
4 - [AATTAATT] 816 (89.89)
4 - .AATGCATT. 575 (100.00)
4 - .AATGTATT. 493 (92.96)
4 - [TATGAATT] 333 (85.19)
5 + .AATGTATT. 7 (92.96)
5 + [CATGCATT] 664 (88.54)
5 - [AATGCATG] 664 (88.54)
5 - .AATACATT. 7 (92.96)
6 + [AATGAATA] 47 (85.19)
6 - [TATTCATT] 47 (85.19)
7 + [TATTCATT] 46 (85.19)
7 + .AATGCATT. 673 (100.00)
7 - .AATGCATT. 673 (100.00)
7 - [AATGAATA] 46 (85.19)
8 + [AATGAATA] 223 (85.19)
8 + [ATTGAATT] 236 (85.29)
8 + .AATACATT. 293 (92.96)
8 + [AAAGCATT] 319 (89.57)
8 + [AATTTATT] 606 (87.90)
8 + [AATGAAAT] 948 (85.29)
8 + [AATTCATA] 1143 (85.19)
8 + [TATGAATT] 1172 (85.19)
8 + [AATGCATG] 1226 (88.54)
8 - [CATGCATT] 1226 (88.54)
8 - [AATTCATA] 1172 (85.19)
8 - [TATGAATT] 1143 (85.19)
8 - [ATTTCATT] 948 (85.29)
8 - [AATAAATT] 606 (87.90)
8 - [AATGCTTT] 319 (89.57)
8 - .AATGTATT. 293 (92.96)
8 - [AATTCAAT] 236 (85.29)
8 - [TATTCATT] 223 (85.19)
9 + .AATGAATT. 855 (94.94)
9 + [AATTCATA] 1006 (85.19)
9 + [AATTCATA] 1953 (85.19)
9 - [TATGAATT] 1953 (85.19)
9 - [TATGAATT] 1006 (85.19)
9 - .AATTCATT. 855 (94.94)
10 + [ATTGAATT] 283 (85.29)
10 + [ATTTCATT] 716 (85.29)
10 + [ACTGCATT] 1078 (86.14)
10 + [AATGAATA] 1102 (85.19)
10 + .AATTCATT. 1518 (94.94)
10 + .AATGCATT. 1529 (100.00)
10 + [AATGCATC] 1656 (87.08)
10 + [ATTTCATT] 1812 (85.29)
10 - [AATGAAAT] 1812 (85.29)
10 - [GATGCATT] 1656 (87.08)
10 - .AATGCATT. 1529 (100.00)
10 - .AATGAATT. 1518 (94.94)
10 - [TATTCATT] 1102 (85.19)
10 - [AATGCAGT] 1078 (86.14)
10 - [AATGAAAT] 716 (85.29)
10 - [AATTCAAT] 283 (85.29)
11 + [ATTTCATT] 278 (85.29)
11 + .AATGTATT. 312 (92.96)
11 + [AATGAAAT] 396 (85.29)
11 + [ATTTCATT] 402 (85.29)
11 + .AATGAATT. 593 (94.94)
11 - .AATTCATT. 593 (94.94)
11 - [AATGAAAT] 402 (85.29)
11 - [ATTTCATT] 396 (85.29)
11 - .AATACATT. 312 (92.96)
11 - [AATGAAAT] 278 (85.29)
12 + [AATTTATT] 413 (87.90)
12 - [AATAAATT] 413 (87.90)
13 + [ATTGAATT] 37 (85.29)
13 + .AATGTATT. 103 (92.96)
13 + .AATACATT. 343 (92.96)
13 + .AATTCATT. 629 (94.94)
13 - .AATGAATT. 629 (94.94)
13 - .AATGTATT. 343 (92.96)
13 - .AATACATT. 103 (92.96)
13 - [AATTCAAT] 37 (85.29)
15 + [AATGCTTT] 59 (89.57)
15 + .AATGCATT. 228 (100.00)
15 + .AATGAATT. 264 (94.94)
15 + [AATTGATT] 977 (86.01)
15 + .AATGTATT. 1129 (92.96)
15 + .AATTCATT. 1228 (94.94)
15 + [ATTTCATT] 1351 (85.29)
15 - [AATGAAAT] 1351 (85.29)
15 - .AATGAATT. 1228 (94.94)
15 - .AATACATT. 1129 (92.96)
15 - [AATCAATT] 977 (86.01)
15 - .AATTCATT. 264 (94.94)
15 - .AATGCATT. 228 (100.00)
15 - [AAAGCATT] 59 (89.57)
16 + .TATGCATT. 109 (90.25)
16 + [TATTCATT] 164 (85.19)
16 - [AATGAATA] 164 (85.19)
16 - .AATGCATA. 109 (90.25)
17 + [AATATATT] 270 (85.91)
17 + [ATTGAATT] 1844 (85.29)
17 - [AATTCAAT] 1844 (85.29)
17 - [AATATATT] 270 (85.91)
18 + .AATGCATT. 295 (100.00)
18 + [CATGCATT] 460 (88.54)
18 - [AATGCATG] 460 (88.54)
18 - .AATGCATT. 295 (100.00)
19 + .AATGCATA. 50 (90.25)
19 + [AATTCAAT] 476 (85.29)
19 + [AATTAATT] 626 (89.89)
19 + [AATTGATT] 926 (86.01)
19 + .AATTCATT. 1262 (94.94)
19 + [AATGAAAT] 1455 (85.29)
19 + .AATCCATT. 1653 (91.06)
19 + .AATGCATT. 1936 (100.00)
19 - .AATGCATT. 1936 (100.00)
19 - .AATGGATT. 1653 (91.06)
19 - [ATTTCATT] 1455 (85.29)
19 - .AATGAATT. 1262 (94.94)
19 - [AATCAATT] 926 (86.01)
19 - [AATTAATT] 626 (89.89)
19 - [ATTGAATT] 476 (85.29)
19 - .TATGCATT. 50 (90.25)
20 + .TATGCATT. 138 (90.25)
20 + .AATACATT. 301 (92.96)
20 - .AATGTATT. 301 (92.96)
20 - .AATGCATA. 138 (90.25)
21 + .AATGCATT. 285 (100.00)
21 + [CATGCATT] 449 (88.54)
21 + [AATGAATA] 526 (85.19)
21 + [AATAAATT] 530 (87.90)
21 - [AATTTATT] 530 (87.90)
21 - [TATTCATT] 526 (85.19)
21 - [AATGCATG] 449 (88.54)
21 - .AATGCATT. 285 (100.00)
22 + .AATGTATT. 114 (92.96)
22 + [AATAAATT] 521 (87.90)
22 + [TATTCATT] 552 (85.19)
22 + [AATGCTTT] 1202 (89.57)
22 + .AATGCATA. 1245 (90.25)
22 + [AATATATT] 1282 (85.91)
22 - [AATATATT] 1282 (85.91)
22 - .TATGCATT. 1245 (90.25)
22 - [AAAGCATT] 1202 (89.57)
22 - [AATGAATA] 552 (85.19)
22 - [AATTTATT] 521 (87.90)
22 - .AATACATT. 114 (92.96)
23 + .TATGCATT. 44 (90.25)
23 + [TATTCATT] 94 (85.19)
23 - [AATGAATA] 94 (85.19)
23 - .AATGCATA. 44 (90.25)
24 + [AATTCAAT] 878 (85.29)
24 + [ATTTCATT] 889 (85.29)
24 + [AATTCAAT] 1039 (85.29)
24 + [AATTCAAT] 1044 (85.29)
24 + [AATTGATT] 1233 (86.01)
24 - [AATCAATT] 1233 (86.01)
24 - [ATTGAATT] 1044 (85.29)
24 - [ATTGAATT] 1039 (85.29)
24 - [AATGAAAT] 889 (85.29)
24 - [ATTGAATT] 878 (85.29)
25 + [AATTGATT] 7 (86.01)
25 + [AATTAATT] 256 (89.89)
25 + [AATTCAAT] 466 (85.29)
25 + [AATGCTTT] 709 (89.57)
25 + [AATTCATA] 1008 (85.19)
25 + [TATGAATT] 1198 (85.19)
25 + [AATTCATA] 1239 (85.19)
25 - [TATGAATT] 1239 (85.19)
25 - [AATTCATA] 1198 (85.19)
25 - [TATGAATT] 1008 (85.19)
25 - [AAAGCATT] 709 (89.57)
25 - [ATTGAATT] 466 (85.29)
25 - [AATTAATT] 256 (89.89)
25 - [AATCAATT] 7 (86.01)
26 + .AATGCATA. 278 (90.25)
26 + .AATGCATT. 1812 (100.00)
26 - .AATGCATT. 1812 (100.00)
26 - .TATGCATT. 278 (90.25)
27 + .AATGAATT. 17 (94.94)
27 + [AATGAAAT] 93 (85.29)
27 + .AATTCATT. 176 (94.94)
27 - .AATGAATT. 176 (94.94)
27 - [ATTTCATT] 93 (85.29)
27 - .AATTCATT. 17 (94.94)
28 + [AATGAAAT] 255 (85.29)
28 + [TATGAATT] 500 (85.19)
28 + .AATGCATT. 1276 (100.00)
28 + [AATGCATC] 1401 (87.08)
28 - [GATGCATT] 1401 (87.08)
28 - .AATGCATT. 1276 (100.00)
28 - [AATTCATA] 500 (85.19)
28 - [ATTTCATT] 255 (85.29)
29 + [AATATATT] 42 (85.91)
29 + [AATGAAAT] 73 (85.29)
29 + [GATGCATT] 595 (87.08)
29 + [AATCAATT] 830 (86.01)
29 + .AATGCATT. 1096 (100.00)
29 - .AATGCATT. 1096 (100.00)
29 - [AATTGATT] 830 (86.01)
29 - [AATGCATC] 595 (87.08)
29 - [ATTTCATT] 73 (85.29)
29 - [AATATATT] 42 (85.91)
30 + [AATGAATA] 84 (85.19)
30 + [AATCAATT] 812 (86.01)
30 + [AATATATT] 865 (85.91)
30 + [AATTCATA] 950 (85.19)
30 + [AATGCATG] 1006 (88.54)
30 - [CATGCATT] 1006 (88.54)
30 - [TATGAATT] 950 (85.19)
30 - [AATATATT] 865 (85.91)
30 - [AATTGATT] 812 (86.01)
30 - [TATTCATT] 84 (85.19)
31 + [AATTGATT] 73 (86.01)
31 + [AATTTATT] 421 (87.90)
31 + .AATTCATT. 1377 (94.94)
31 - .AATGAATT. 1377 (94.94)
31 - [AATAAATT] 421 (87.90)
31 - [AATCAATT] 73 (86.01)
32 + [ATTTCATT] 88 (85.29)
32 + [AATTTATT] 428 (87.90)
32 + .AATGAATT. 458 (94.94)
32 + [AATGAATA] 894 (85.19)
32 - [TATTCATT] 894 (85.19)
32 - .AATTCATT. 458 (94.94)
32 - [AATAAATT] 428 (87.90)
32 - [AATGAAAT] 88 (85.29)
33 + .AATACATT. 197 (92.96)
33 + [AACGCATT] 636 (86.69)
33 - [AATGCGTT] 636 (86.69)
33 - .AATGTATT. 197 (92.96)
34 + [AATTGATT] 372 (86.01)
34 + .AATTCATT. 461 (94.94)
34 + [AATTAATT] 761 (89.89)
34 - [AATTAATT] 761 (89.89)
34 - .AATGAATT. 461 (94.94)
34 - [AATCAATT] 372 (86.01)
35 + [TATGAATT] 603 (85.19)
35 + .AATGCAAT. 1195 (90.35)
35 + [AATATATT] 1394 (85.91)
35 + [CATGCATT] 1459 (88.54)
35 + [ATTGAATT] 1646 (85.29)
35 + [AATGCATC] 1760 (87.08)
35 - [GATGCATT] 1760 (87.08)
35 - [AATTCAAT] 1646 (85.29)
35 - [AATGCATG] 1459 (88.54)
35 - [AATATATT] 1394 (85.91)
35 - .ATTGCATT. 1195 (90.35)
35 - [AATTCATA] 603 (85.19)
36 + [AATCAATT] 517 (86.01)
36 + .AATGAATT. 765 (94.94)
36 + [TATGAATT] 940 (85.19)
36 + [AATCAATT] 1022 (86.01)
36 + .ATTGCATT. 1744 (90.35)
36 - .AATGCAAT. 1744 (90.35)
36 - [AATTGATT] 1022 (86.01)
36 - [AATTCATA] 940 (85.19)
36 - .AATTCATT. 765 (94.94)
36 - [AATTGATT] 517 (86.01)
37 + .AATACATT. 61 (92.96)
37 + [AATCAATT] 138 (86.01)
37 - [AATTGATT] 138 (86.01)
37 - .AATGTATT. 61 (92.96)
38 + [AATAAATT] 45 (87.90)
38 + [AATTAATT] 1033 (89.89)
38 - [AATTAATT] 1033 (89.89)
38 - [AATTTATT] 45 (87.90)
39 + .AATGAATT. 600 (94.94)
39 + .AATGAATT. 883 (94.94)
39 + [AATTGATT] 1221 (86.01)
39 + [AATGAATA] 1328 (85.19)
39 - [TATTCATT] 1328 (85.19)
39 - [AATCAATT] 1221 (86.01)
39 - .AATTCATT. 883 (94.94)
39 - .AATTCATT. 600 (94.94)
41 + [AATTTATT] 1930 (87.90)
41 - [AATAAATT] 1930 (87.90)
42 + [ATTGAATT] 492 (85.29)
42 - [AATTCAAT] 492 (85.29)
43 + [ATTTCATT] 69 (85.29)
43 + .AATGCATT. 650 (100.00)
43 + [AATGCATC] 775 (87.08)
43 - [GATGCATT] 775 (87.08)
43 - .AATGCATT. 650 (100.00)
43 - [AATGAAAT] 69 (85.29)
44 + [AATTCAAT] 152 (85.29)
44 + .AATGAATT. 308 (94.94)
44 - .AATTCATT. 308 (94.94)
44 - [ATTGAATT] 152 (85.29)
45 + .AATACATT. 392 (92.96)
45 + [TATTCATT] 751 (85.19)
45 + [AATGAATA] 778 (85.19)
45 + [AAAGCATT] 1119 (89.57)
45 - [AATGCTTT] 1119 (89.57)
45 - [TATTCATT] 778 (85.19)
45 - [AATGAATA] 751 (85.19)
45 - .AATGTATT. 392 (92.96)
46 + [AATTTATT] 576 (87.90)
46 - [AATAAATT] 576 (87.90)
47 + .AATTCATT. 1413 (94.94)
47 + [AAAGCATT] 1472 (89.57)
47 - [AATGCTTT] 1472 (89.57)
47 - .AATGAATT. 1413 (94.94)
48 + .TATGCATT. 132 (90.25)
48 + [TATTCATT] 183 (85.19)
48 - [AATGAATA] 183 (85.19)
48 - .AATGCATA. 132 (90.25)
49 + [AATGCACT] 194 (85.80)
49 + [AATTGATT] 472 (86.01)
49 + .AATGCATA. 677 (90.25)
49 - .TATGCATT. 677 (90.25)
49 - [AATCAATT] 472 (86.01)
49 - [AGTGCATT] 194 (85.80)
51 + [AAAGCATT] 391 (89.57)
51 + .TATGCATT. 478 (90.25)
51 - .AATGCATA. 478 (90.25)
51 - [AATGCTTT] 391 (89.57)
52 + .AATGTATT. 164 (92.96)
52 + [TATTCATT] 168 (85.19)
52 + [AATAAATT] 1115 (87.90)
52 + [CATGCATT] 1651 (88.54)
52 + [AATGAAAT] 1981 (85.29)
52 - [ATTTCATT] 1981 (85.29)
52 - [AATGCATG] 1651 (88.54)
52 - [AATTTATT] 1115 (87.90)
52 - [AATGAATA] 168 (85.19)
52 - .AATACATT. 164 (92.96)
53 + [TATTCATT] 169 (85.19)
53 + .TATGCATT. 298 (90.25)
53 + .TATGCATT. 441 (90.25)
53 + .AATGAATT. 535 (94.94)
53 - .AATTCATT. 535 (94.94)
53 - .AATGCATA. 441 (90.25)
53 - .AATGCATA. 298 (90.25)
53 - [AATGAATA] 169 (85.19)
54 + .AATGCATA. 671 (90.25)
54 + .AATGCATT. 1380 (100.00)
54 - .AATGCATT. 1380 (100.00)
54 - .TATGCATT. 671 (90.25)
55 + [AATGAAAT] 45 (85.29)
55 + [AATTCATA] 900 (85.19)
55 + [AATGCATG] 965 (88.54)
55 - [CATGCATT] 965 (88.54)
55 - [TATGAATT] 900 (85.19)
55 - [ATTTCATT] 45 (85.29)
56 + .AATGCATT. 406 (100.00)
56 - .AATGCATT. 406 (100.00)
57 + .ATTGCATT. 317 (90.35)
57 + [AATTTATT] 1156 (87.90)
57 + [CATGCATT] 1911 (88.54)
57 - [AATGCATG] 1911 (88.54)
57 - [AATAAATT] 1156 (87.90)
57 - .AATGCAAT. 317 (90.35)
59 + .AATGAATT. 1287 (94.94)
59 - .AATTCATT. 1287 (94.94)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 903 68 49 100| 112 0 0 12
2 935 41 38 106| 121 0 0 3
3 90 47 37 946| 0 0 0 124
4 138 90 676 216| 14 1 90 19
5 216 676 90 138| 19 90 1 14
6 946 37 47 90| 124 0 0 0
7 106 38 41 935| 3 0 0 121
8 100 49 68 903| 12 0 0 112






ATGCATTTGT
ACAAATGCAT

2 redundant motifs found:
CATGCATTTG - TATGCATTTG -

Best occurrences (match percentage):
Seq St oligo pos match
1 - [ATTGATTTTT] 105 (87.76)
2 + [ATGAAATTGT] 612 (87.56)
2 + [TTTCATTTTT] 1542 (88.12)
2 - [ATGATTTTTT] 1642 (86.99)
2 - [ATCTATTTTT] 659 (86.02)
3 + [TTTAATTTGT] 272 (85.86)
3 + .ATGCATTTTA. 329 (91.15)
3 + [AATCATTTTT] 435 (87.21)
3 + .ATTTATTTGT. 928 (91.14)
3 + .ATGTATTTTT. 1027 (92.93)
3 - [ATTTATTTAT] 849 (85.79)
4 + [ATACATTTTA] 494 (85.81)
4 + .ATTAATTTTT. 817 (91.25)
4 + .ATTAATTTTT. 831 (91.25)
4 + [ATGTTTTTTT] 1065 (85.31)
4 - [TTGAATTTTT] 859 (87.65)
4 - .ATTAATTTTT. 813 (91.25)
4 - [ATGAATTTGG] 371 (85.44)
4 - .ATGAATTTTT. 330 (94.61)
4 - .ATTCATTTTT. 298 (95.08)
4 - [AAACATTTTT] 27 (85.23)
5 + [ATGTATTTAT] 8 (89.15)
5 + [ATTTATTTCT] 19 (85.60)
5 + [ATTCTTTTGT] 598 (89.02)
5 + [ATGCATTTCA] 665 (87.18)
5 + .ATTAATTTTT. 884 (91.25)
5 + [TTTCATTTTT] 1123 (88.12)
5 - [CTGAATTTTT] 1144 (85.27)
5 - [CTGAATTTTT] 445 (85.27)
6 + [TTGAATTTTT] 1221 (87.65)
6 - [ATGATTTTTT] 1295 (86.99)
6 - [ATGCAATTTT] 425 (89.82)
6 - [ATGTTTTTGT] 242 (86.87)
6 - [ATTCATTTGA] 44 (89.36)
7 + [CTGAATTTTT] 223 (85.27)
7 + [TTGAATTTTT] 289 (87.65)
7 + .ATGCATTTGT. 674 (100.00)
7 - .ATGCATTTAT. 670 (94.65)
7 - [ATTTATTTTT] 666 (89.57)
7 - [TTGCATTTGA] 658 (85.76)
7 - .ATGTATTTTT. 86 (92.93)
8 + [TTACATTTTT] 114 (86.14)
8 + [TTGAATTTTT] 237 (87.65)
8 - .ATGCATTTTT. 1223 (98.43)
8 - [ATGAATTTTA] 1140 (87.33)
8 - [AAACATTTTT] 996 (85.23)
8 - [ATAAATTTCT] 603 (85.30)
8 - [ATTCTTTTTT] 369 (87.45)
8 - .ATTCATTTTT. 220 (95.08)
9 + [ATGAATTTGA] 856 (88.89)
9 + [AAGAATTTTT] 891 (86.75)
9 + [ATTCAGTTGT] 1282 (85.32)
9 - [ATGAATTTTA] 1950 (87.33)
9 - [ATTCATTTTA] 852 (87.79)
10 + [TTGAATTTTT] 284 (87.65)
10 - .ATGCATTTCT. 1653 (94.46)
10 - .ATGAATTTGT. 1515 (96.18)
10 - .TTGCATTTGT. 862 (93.04)
10 - [AAACATTTGT] 743 (86.79)
12 + [ATCAATTTTT] 292 (87.70)
12 + [ATTCATTTGA] 454 (89.36)
12 - [ATTCTTTTGT] 385 (89.02)
12 - .ATTTATTTGT. 53 (91.14)
13 + [ATGTTTTTGT] 285 (86.87)
13 + [ATAAATTTTT] 1260 (89.27)
13 + .AAGCATTTTT. 1558 (90.57)
13 + [ATACATTTTA] 1700 (85.81)
13 - [TTACATTTTT] 936 (86.14)
13 - .ATTAATTTGT. 844 (92.82)
13 - .ATGTATTTTT. 340 (92.93)
13 - [ATACATTTTA] 100 (85.81)
13 - [TTGTATTTTT] 80 (85.97)
14 - [ATCTATTTGT] 713 (87.59)
14 - [ATTAATTTCT] 218 (87.28)
15 + [ATGCATTTAA] 229 (87.37)
15 + [ATGAATTTTA] 265 (87.33)
15 + [ATGCTTTTCT] 1501 (86.84)
15 - [ATGAATATGT] 1578 (85.86)
15 - [ATCAATTTTT] 974 (87.70)
15 - [TTACATTTTT] 544 (86.14)
15 - [ATGCCTTTGT] 306 (87.46)
15 - .ATTCATTTAT. 261 (91.29)
15 - .ATTTATTTGT. 257 (91.14)
15 - .ATGCATTTTA. 225 (91.15)
16 + .ATGCATTTGT. 110 (100.00)
17 + [AATCATTTTT] 151 (87.21)
17 - [TTTCATTTTT] 1213 (88.12)
18 + [ATCAATTTTT] 140 (87.70)
18 + .ATGCATTTGT. 461 (100.00)
18 - .ATGAATTTGT. 357 (96.18)
18 - [CTGCATTTTT] 271 (89.09)
19 + [TTCCATTTGT] 460 (86.13)
19 + [TTACATTTTT] 1759 (86.14)
19 - .ATACATTTTT. 1708 (93.10)
19 - .ATGAATTTGT. 1259 (96.18)
19 - [ATGTTTTTTT] 826 (85.31)
19 - .ATTAATTTTT. 623 (91.25)
19 - [ATGCATTTGC] 47 (88.80)
19 - [ATTTATTTTT] 11 (89.57)
20 + [ATACATTTAT] 431 (89.31)
20 + [CTTCATTTTT] 500 (85.73)
20 - [ATGTATTTGA] 298 (87.22)
21 + .ATGCATTTGT. 450 (100.00)
21 - .ATGAATTTGT. 353 (96.18)
22 + [AAGTATTTTT] 180 (85.07)
22 + [ATACTTTTTT] 903 (85.47)
22 - [ATTTATTTTT] 518 (89.57)
23 + .ATGCATTTGT. 45 (100.00)
24 + [AAGAATTTTT] 346 (86.75)
24 + [ATCCATTTGA] 790 (85.80)
24 + [TTTCATTTTT] 890 (88.12)
24 + [AAACATTTTT] 1010 (85.23)
24 + [ATTCAATTTT] 1045 (86.46)
24 + [ATGATTTTTT] 1410 (86.99)
24 + [ATACTTTTTT] 1781 (85.47)
24 - [AATCATTTTT] 1406 (87.21)
24 - [ATCAATTTTT] 1230 (87.70)
25 + [ATGCATATTT] 131 (88.11)
25 - [ATGAATATGT] 1628 (85.86)
25 - .ATGAATTTTT. 1005 (94.61)
26 - [ATGCATTTGC] 275 (88.80)
27 + .ATGCAATTGT. 164 (91.38)
27 + .ATTCATTTTT. 177 (95.08)
28 - [AAACATTTGT] 1149 (86.79)
28 - [CTGAATTTTT] 582 (85.27)
29 + .ATGCATTTTT. 596 (98.43)
29 + [TTGTATTTTT] 621 (85.97)
29 + .ATGCATTTGT. 1097 (100.00)
29 - .ATGCATTTAT. 1093 (94.65)
29 - [TTGCATTTGA] 1081 (85.76)
29 - [ATTGATTTGT] 827 (89.32)
30 - .ATGCATTTTT. 1003 (98.43)
30 - [ATGAATTTTA] 947 (87.33)
30 - [ATATATTTGT] 862 (89.16)
30 - [ATGAAATTGT] 423 (87.56)
31 + .ATTCATTTAT. 1378 (91.29)
31 - [ATTTATTTTT] 1564 (89.57)
31 - [ATGAATTTGG] 1374 (85.44)
31 - [ATGTATTTCT] 505 (88.96)
31 - [ATTCTTTTGT] 473 (89.02)
32 + [TTGTATTTTT] 413 (85.97)
32 - [ATTCATTGGT] 455 (85.21)
32 - [ATTAATTTCT] 297 (87.28)
33 + [ATCAATTTTT] 685 (87.70)
33 - [CTGAATTTTT] 908 (85.27)
33 - .ATGTATTTTT. 194 (92.93)
34 + [AAGAATTTGT] 224 (88.31)
34 + [ATTTATTTTT] 604 (89.57)
34 + .ATTAATTTTT. 762 (91.25)
34 + .ATGCTTTTTT. 826 (90.81)
34 + [ATTAATTTGA] 849 (85.54)
34 + [ACGCATTTTT] 1320 (88.00)
34 - [ATTCTTTTTT] 1078 (87.45)
34 - [ATTTATTTCT] 798 (85.60)
34 - [ATTAATTTAT] 758 (87.47)
35 + [ATGATTTTTT] 8 (86.99)
35 + [ATCTATTTTT] 78 (86.02)
35 + .ATGAATTTAT. 604 (90.83)
35 + [ATGCATTTCA] 1460 (87.18)
35 + .ATTAATTTTT. 1656 (91.25)
35 - [AGTCATTTGT] 1527 (85.72)
36 + [ATGATTTTTT] 804 (86.99)
36 + [ATGCATGTTT] 841 (87.60)
36 + .ATGAATTTAT. 941 (90.83)
36 + [ATCAATTTTT] 1023 (87.70)
36 - [ATTGATTTTT] 1019 (87.76)
36 - [ATGAAATTTT] 886 (86.00)
37 + .ATGTATTTGT. 453 (94.50)
37 - [ATTTATTTTT] 327 (89.57)
37 - [ATTGATTTTT] 135 (87.76)
38 + [ATCAATTTTT] 134 (87.70)
38 - [AAGTATTTGT] 189 (86.63)
39 + [ATACATTTAT] 437 (89.31)
39 - [ATTCATTTGC] 1325 (85.44)
41 + .ATAAATTTGT. 343 (90.84)
41 + [AAGTATTTTT] 432 (85.07)
41 + [AATCATTTTT] 453 (87.21)
41 + [ATTTATTTTT] 1931 (89.57)
42 - [TTTCATTTTT] 659 (88.12)
42 - [ATTCAATTTT] 489 (86.46)
43 + [AAGTATTTTT] 242 (85.07)
43 + [ATGCATTGGT] 651 (88.57)
44 + [ATTCAATTTT] 153 (86.46)
44 + .ATGGATTTTT. 581 (91.12)
44 - [ATTGATTTTT] 301 (87.76)
44 - [TTGAATTTTT] 149 (87.65)
44 - [CTGAATTTTT] 95 (85.27)
44 - [TTGAATTTTT] 35 (87.65)
45 + [ATTCTTTTGT] 375 (89.02)
45 + .ATACATTTTT. 393 (93.10)
45 + [AAGAATTTGT] 742 (88.31)
45 + [ATTCATTTTA] 752 (87.79)
45 + .AAGCATTTTT. 1120 (90.57)
45 + [ATACTTTTTT] 1503 (85.47)
45 - [ATGGATTTCT] 929 (87.14)
45 - .ATGTATTTTT. 389 (92.93)
45 - [AAGAATTTTT] 371 (86.75)
46 - [ATTCAATTTT] 108 (86.46)
47 + [ATGAATTTGG] 753 (85.44)
47 + [ATTCATTCGT] 1418 (85.21)
47 + [AAGAATTTTT] 1496 (86.75)
47 - [TTGAATTTTT] 1445 (87.65)
48 + .ATGCATTTGT. 133 (100.00)
49 + .ATTCATTTTT. 75 (95.08)
49 + [TTGGATTTGT] 974 (85.72)
49 + .ATACATTTTT. 996 (93.10)
50 - [ATGATTTTTT] 117 (86.99)
51 + [ATCTATTTTT] 59 (86.02)
51 - [ATAGATTTTT] 55 (85.78)
52 + .ATTCATTTTT. 169 (95.08)
52 + [ATGCATTTCA] 1652 (87.18)
52 - .ATACATTTTT. 161 (93.10)
53 + [TTGTATTTTT] 117 (85.97)
53 + [ATTCATTTTA] 170 (87.79)
53 + [TTACATTTTT] 177 (86.14)
53 + .ATGCATTTGT. 442 (100.00)
53 - .ATGAATTTTT. 356 (94.61)
54 + [CTGTATTTGT] 40 (85.16)
54 + [AGGAATTTGT] 105 (85.25)
54 + [ATAAATTTTT] 1061 (89.27)
55 - .ATGCATTTTT. 962 (98.43)
55 - [ATGAATTTTA] 897 (87.33)
55 - .ATTCATTTCT. 869 (91.10)
56 + .ATGCATTTGT. 407 (100.00)
56 - .ATGCATTTAT. 403 (94.65)
56 - .TTGCATTTGT. 391 (93.04)
57 + .ATGCAATTGT. 107 (91.38)
57 + [TTGCATTTCT] 318 (87.50)
57 + .ATGCATTTTT. 1912 (98.43)
57 - [AAACATTTTT] 1982 (85.23)
57 - [AAGTATTTTT] 1613 (85.07)
57 - [ATTCTTTTTT] 1568 (87.45)
57 - [AAGTATTTTT] 821 (85.07)
59 + [AAGAATTTGT] 641 (88.31)
59 + .ATGAATTTTT. 1288 (94.61)
59 - .ATTCATTTTT. 1284 (95.08)
59 - [ATTCATGTGT] 444 (85.81)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 810 76 46 139| 67 0 0 2
2 115 60 53 843| 2 0 0 67
3 149 100 576 246| 5 0 44 20
4 228 600 94 149| 19 40 1 9
5 862 36 48 125| 68 0 0 1
6 99 44 50 878| 2 0 0 67
7 66 46 58 901| 0 0 0 69
8 67 50 50 904| 0 0 0 69
9 127 121 492 331| 7 2 23 37
10 132 49 55 835| 2 0 0 67






AAAGAGAAGAAG
CTTCTTCTCTTT

5 redundant motifs found:
AATGAGAAGAAG - AAAGAGAAGAGA - AAGAGAAGAAGA - AAAAGAGAAGAA - AAGGAGAAGAGA -

Best occurrences (match percentage):
Seq St oligo pos match
1 - [AAAAACAAAAAA] 358 (86.02)
1 - [AAAAAGAGAAAA] 224 (85.34)
1 - .AAAGAGAAAAAG. 222 (97.63)
2 + .AAAATGAAGAAG. 896 (91.55)
2 + .AAAGAGAAAAAT. 1078 (92.71)
2 + [AAAAAGATGAAT] 1159 (85.89)
2 + [AAAAAGCAAAAG] 1316 (87.05)
2 - [AAAAAAAAAGAG] 301 (85.40)
2 - [AAAAAAAAGAGA] 300 (85.82)
2 - [AAAAAAGAGAAA] 298 (85.69)
2 - [AAAAAGAGAAAA] 297 (85.34)
2 - [AAAGAGAAAACA] 295 (86.41)
2 - [AAAGTGAAAAAA] 29 (88.71)
3 - [AAAAAAAACAAA] 933 (86.02)
3 - [AATTAGAAGAAG] 696 (87.81)
4 + [AAAAAAAAGGAA] 456 (85.59)
4 - [ACAGAGAAAAAA] 1458 (85.70)
5 + .AAAGAGAAGAAG. 802 (100.00)
6 + .AAAAAAAAAAAA. 380 (90.84)
6 + .AAAAAAAAAAAA. 381 (90.84)
6 + .AAAAAAAAAAAA. 382 (90.84)
6 + .AAAAAAAAAAAA. 383 (90.84)
6 + .AAAAAAAAAAAA. 384 (90.84)
6 + .AAAAAAAAAAAA. 385 (90.84)
6 + .AAAAAAAAAAAA. 386 (90.84)
6 + .AAAAAAAAAAAA. 387 (90.84)
6 + .AAAAAAAAAAAA. 388 (90.84)
6 + [AAAAAAAAAAAT] 389 (88.10)
6 + [AAAAATAAAAAA] 1048 (86.95)
6 + [AAATAAAAAAAA] 1050 (87.12)
6 + [AAATTGAAGAAA] 1081 (85.65)
6 - [GAAGAGAAAAAA] 979 (88.93)
6 - [GAGAAGAAGAAG] 550 (85.11)
6 - [AAAAAAAATAAA] 177 (86.22)
7 - .AAAGAGACGAAG. 774 (91.02)
8 + .AAAAAAAAGAAT. 367 (90.47)
8 + .AAAAAGAAAAAG. 1066 (95.92)
8 + [CAAGAAAAGAAA] 1110 (86.41)
9 + [AAAAAAACGAAG] 291 (86.42)
9 + .AATGAGAAGAAG. 1640 (93.24)
9 + [GAGAAGAAGAAG] 1643 (85.11)
9 + .AAGAAGAAGAAG. 1646 (91.63)
9 - [AGAAAGAAAAAG] 1878 (88.80)
9 - [ATAGAAAAGAAG] 398 (88.44)
9 - [AAAGAAGAGAAA] 393 (87.40)
10 - [AAAAAAAAGGAA] 1403 (85.59)
11 + [TAAAAGAAGAAA] 361 (87.75)
11 - [AAAAAAAACAAA] 3 (86.02)
13 + [AAAGAGCAAAAA] 1288 (86.58)
14 + [AAACAGAAGATG] 669 (87.25)
15 + [AAAGAGAAGTAA] 713 (88.82)
17 + .AAGAAGAAGAAG. 75 (91.63)
17 + .AAGAAGAAGAAG. 78 (91.63)
17 + [AAAATGAAAAAA] 1214 (86.99)
17 - .AAAAAGAAGAAA. 728 (96.10)
17 - [AGAAAGAAGAAA] 704 (88.99)
17 - [AAAGAGGAGAAC] 55 (85.82)
19 + [AAAGAGATGAGG] 30 (85.14)
20 - .AATGAGAAGAAA. 391 (91.06)
22 + [AAAAAAAATAAA] 1306 (86.22)
24 + .AAATAGAAAAAG. 963 (92.20)
24 + .AAAAAGAAAAAA. 969 (93.73)
24 + [AAAGAAAAAAGA] 971 (85.17)
24 + [AGAAAAAAGAAG] 973 (88.28)
24 + [AAAAAGAAGAGA] 976 (88.72)
24 + [AAAGAAGAGAAG] 978 (89.58)
24 + [AATAAGAAAAAG] 1113 (89.16)
24 + .AAAGAGATGAAG. 1644 (92.52)
24 + [AGAAAAAAAAAG] 1672 (85.91)
24 + [AAAAAAAAAGAG] 1674 (85.40)
24 + [AAAAAAAAGAGA] 1675 (85.82)
24 - [AAAAAGGAAAAA] 1053 (86.21)
24 - [AAAAGGAAAAAA] 1052 (85.62)
24 - [AAGAAAAAAAAG] 1026 (86.36)
24 - .AAAAAAAAGAAG. 1023 (95.39)
24 - .AAAAAGAAGAAG. 1020 (98.29)
24 - [AAGAAGAAGAAA] 1017 (89.44)
24 - .AAAGAGAAAGAG. 709 (90.01)
24 - .AAAGAGAAGATG. 640 (92.95)
24 - .AAAGAAAAGAAG. 7 (97.10)
25 + [AAAAAAAAGAAC] 267 (88.73)
25 + [AAATAGAAGAAT] 1515 (89.65)
25 - [AAAATAAAAAAG] 81 (86.28)
26 + .AAATAGAAAAAA. 691 (90.02)
26 + [AACAAAAAGAAG] 1004 (86.18)
26 + [AAAAAGAAGTAA] 1007 (87.11)
26 + [AAAAAAAAGGAG] 1085 (87.77)
26 + .AAAAAGGAGAAG. 1088 (90.77)
26 + .GAAGAGAAAAAG. 1096 (91.11)
28 - [AATGGGAAGAAG] 1420 (85.13)
28 - .AGAGAGAAAAAG. 1377 (90.52)
28 - [AAAGAAGAGAAG] 1345 (89.58)
28 - [AGAGAAAAGAAT] 1195 (85.07)
28 - [AAAGAATAGAAA] 1190 (86.56)
29 + .AAAGAGAAGAGA. 1162 (90.43)
29 - [AAGAAGAAAAAG] 1223 (89.26)
29 - [CAAAAGAAGAAG] 685 (89.78)
29 - [AAAAAGAGAAAA] 434 (85.34)
29 - .AAAGAGAAAAAA. 432 (95.45)
29 - [AGAGAAAAAAAA] 430 (85.44)
29 - [AAAAAAAAGAGA] 426 (85.82)
29 - [AAAAAAGAGAAA] 424 (85.69)
29 - [AAAAAGAGAAAG] 423 (87.52)
29 - [AAAGAGAAAGAA] 421 (87.83)
29 - [AACGAGAAGAAA] 112 (88.60)
29 - [AAAAAGATGAAA] 27 (88.62)
30 + .AAAAAAAAGAAG. 907 (95.39)
30 - .AAAAAGGAGAAG. 652 (90.77)
30 - .AAGGAGAAGAAG. 649 (93.34)
31 + .AAATAGAAGAAA. 56 (92.39)
31 - [AAAAAAATAAAG] 1744 (85.54)
31 - [AGAAAGAAAAAG] 1693 (88.80)
31 - [ATAAAGAAAAAG] 1511 (87.25)
31 - [AAAGAAAAAGAG] 1509 (87.12)
31 - .GAAGAGAAGAAG. 1492 (93.49)
31 - [AAAGATAATAAG] 957 (86.23)
32 - [AGAAAAAAGAAA] 94 (86.10)
32 - [AAAGAAATGAAA] 89 (87.44)
33 + [GAAGAGGAGAAG] 520 (85.97)
33 - .AAAGTGAAAAAG. 1177 (90.89)
33 - .AAAAAAAAGAAG. 571 (95.39)
33 - [AAAAAGAAGGAA] 568 (88.49)
33 - [AAGAAAAAGAAG] 446 (88.73)
33 - .AAAAAGAAGAAG. 443 (98.29)
34 + .GAAGAAAAGAAG. 423 (90.59)
34 + [GAAAAGAAGAAA] 426 (89.59)
34 + [AGAAAAAAAAAG] 1073 (85.91)
34 + .AAAAAAAAGAAT. 1076 (90.47)
34 - .AGAGAGAAGAAA. 1274 (90.70)
34 - [AAAAAAGAGAAA] 255 (85.69)
34 - [AAAAAGAGAAAA] 254 (85.34)
34 - .AAAGAGAAAAAG. 252 (97.63)
35 + [AATAAAAAGAAG] 1591 (88.64)
35 + .AAAAAGAAGAAA. 1594 (96.10)
35 - [AAACAGTAGAAG] 1697 (85.94)
35 - [AAAAAGAAGTAG] 695 (89.29)
35 - [AAAGAAAAGTAG] 38 (88.11)
36 + [AAACAGAAAAAT] 242 (87.01)
36 + [AAAAAAAACAAA] 920 (86.02)
36 + [AAAAACAAAAAG] 923 (88.20)
36 + [AAAAAGCAGAAA] 1202 (87.24)
36 + .AAAAAGAAAAAA. 1287 (93.73)
36 + [AAAGAAAAAAAT] 1289 (89.82)
36 - [AAAGAAAAGAGA] 1721 (87.54)
36 - .AAAGAGAAGAGG. 1348 (92.62)
36 - [AAAGAAAAAAAT] 807 (89.82)
36 - .AAAGAGAACAAA. 689 (90.63)
37 - [AAAGGGAAAAAA] 264 (87.33)
38 + [AAAGAAAATAAA] 39 (87.93)
38 + [AAATTGAAAAAG] 602 (85.46)
38 + .AAAAAGAAAAAA. 608 (93.73)
38 + [AAAGAAAAAAAT] 610 (89.82)
39 + [AAAGGGAAAAAA] 1076 (87.33)
39 + .AAAAAGGAGAAG. 1083 (90.77)
39 + .AAGGAGAAGAAA. 1086 (91.16)
39 - [AAAGAGAGGAAA] 1607 (89.42)
40 - [CAAGAGAAAAAA] 160 (86.94)
41 + [AAAGAGAATAGG] 1740 (85.63)
41 - [GAAAAAAAGAAG] 1949 (88.88)
41 - [AAAAAGAAGAGA] 1946 (88.72)
41 - [AAAGAGAATAGG] 1213 (85.63)
41 - [AAATAAAAGAAC] 1194 (85.01)
41 - [GAAGTGAAGAAG] 992 (86.75)
41 - [GAAAAAAAGAAA] 792 (86.69)
42 + [AAAGTGAAAAAT] 340 (85.97)
42 + [AACGAAAAAAAG] 427 (85.52)
42 + [GAAAAAAAGAAG] 430 (88.88)
42 + [AAAAAGAAGGAA] 433 (88.49)
42 + [AAACAAAAGAAA] 459 (89.22)
44 + .AAAGAGAAAAAA. 5 (95.45)
44 - .AAAGAGAAAAAG. 431 (97.63)
45 + [AAATATAAAAAG] 68 (85.42)
45 + [ATAGAAAAAAAG] 783 (86.07)
45 + [GAAAAAAAGAAA] 786 (86.69)
45 + [AAAAAGAAAGAG] 789 (88.30)
45 + [AATAAAAAGAAA] 1214 (86.45)
45 - [TAAAAGAAAAAG] 1074 (87.57)
45 - [AAGAAAAAGAAG] 1071 (88.73)
45 - [AAAGAAAACAAT] 1010 (85.00)
45 - [AGAGAAAAAAAA] 700 (85.44)
46 + .AAAAAAAAGAAA. 95 (93.21)
46 + .AAAAAGAAAAAA. 98 (93.73)
46 + .AAAGAAAAAAAA. 100 (92.55)
46 + [AAAAAAAAAATG] 650 (85.97)
47 + .AAGGAAAAGAAG. 469 (90.45)
47 + [AAAAAGAAAACG] 740 (86.88)
47 + .GAAGAGAAGAAA. 809 (91.30)
49 + [AAAAAAAGGAAG] 266 (87.00)
49 - [ATAGAGAAAAAA] 1001 (86.78)
52 + [AAAAAGAGAAAA] 1786 (85.34)
52 + .AAAGAGAAAAAG. 1788 (97.63)
52 + [AAAAGGAAGAAA] 1795 (87.99)
52 - [ACAAAGAAGAAG] 1889 (88.54)
52 - [AAAGAGAATAAT] 500 (88.10)
53 - [AAAGAGACAAAA] 27 (86.47)
54 + [AAAATAAAAAAG] 19 (86.28)
54 + [ATAAAAAAGAAG] 22 (86.73)
54 - [AATGAGAAAAAA] 1255 (88.69)
54 - [AAAAAGATAAAA] 1083 (86.25)
54 - [AAAGATAAAAAA] 1081 (88.66)
55 + .GAAAAGAAGAAG. 695 (91.77)
55 + [AAAAAGAAGACA] 825 (87.07)
55 - [AAAAAGAGGAAG] 761 (89.90)
56 + [AGAGAGGAGAAG] 497 (85.37)
56 + [AAAGAGCAAAAG] 512 (88.76)
56 - [GAAGAGAAGAAC] 596 (86.82)
56 - .ATAGAGAAGAAG. 568 (91.34)
56 - [AAAAAGAAGTAG] 544 (89.29)
56 - [AAGTAGAAGAAG] 532 (87.91)
56 - .AAGAAGAAGAAG. 526 (91.63)
56 - .AAAAAAAAGAAA. 219 (93.21)
56 - .AAAAAGAAAAAA. 216 (93.73)
56 - .AAAGAAAAAAAA. 214 (92.55)
56 - [AAAAAAAATAAA] 209 (86.22)
56 - [AAAAAAATAAAG] 208 (85.54)
57 + .GAAGAGAAAAAG. 134 (91.11)
57 + .AAAAAGAAAAAT. 754 (91.00)
57 + [GAAGAGAACAAG] 792 (86.30)
57 + .AAAAAGAAGAAG. 1841 (98.29)
57 + [AAACAGAAAAAA] 1861 (89.75)
57 - .AAAAAAAAGAAG. 1951 (95.39)
57 - .AAAAAGAAGAAG. 1948 (98.29)
58 + [AGAAAGAAAAAA] 108 (86.62)
58 + [AAAAAGAACAAA] 221 (88.92)
58 - .AAAAAAAAGAAG. 465 (95.39)
58 - .AAAAAGAAGAGG. 462 (90.90)
58 - .AAAAAAAAAAAG. 197 (93.02)
58 - .AAAAAAAAGAAG. 194 (95.39)
58 - [AAAAAGAAGAGA] 191 (88.72)
58 - [AAAGAAGAGAAA] 189 (87.40)
59 + [GAAAAAAAGAAG] 74 (88.88)
59 + [AAAAAGAAGTAA] 77 (87.11)
59 + [AATAAGAAAAAG] 98 (89.16)
59 + [AAGAAAAAGAAG] 101 (88.73)
59 + [AAAAACAAGAAT] 124 (85.65)
59 + [GAAAAAAAAAAG] 525 (86.51)
59 + [AAAAAAAAAAGG] 526 (85.64)
59 + [AAAGTGAAAAAA] 1187 (88.71)
59 - [AATTAGAAGAAA] 799 (85.63)
59 - [CAAGAAAAGAAA] 672 (86.41)
59 - [GAAAAGAAAAAA] 669 (87.22)
59 - [AAAGAAAAAATA] 667 (85.50)
59 - .AAATAGAAAAAA. 660 (90.02)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 1249 109 193 114| 73 0 6 0
2 1306 80 170 109| 76 0 2 1
3 1221 87 181 176| 70 0 7 2
4 505 161 825 174| 43 0 32 4
5 1270 87 124 184| 77 0 0 2
6 430 108 986 141| 25 0 54 0
7 1295 102 150 118| 76 0 3 0
8 1297 99 117 152| 77 1 0 1
9 477 120 941 127| 34 1 44 0
10 1332 82 150 101| 78 0 1 0
11 1254 94 151 166| 75 0 3 1
12 462 128 864 211| 31 0 44 4





*** Interesting motifs (not highest-ranking) can also be :


ATCCGGAT
ATCCGGAT

3 redundant motifs found:
ATCATGAT - ATCTAGAT - TCCGGA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [ATCCGAAA] 81 (85.59)
1 + [ATACGAAT] 320 (85.03)
1 - [ATTCGTAT] 320 (85.03)
1 - [TTTCGGAT] 81 (85.59)
2 + [ATCTGAAT] 134 (86.81)
2 + [ATCTGAAT] 554 (86.81)
2 + .ATCCAGAT. 1558 (93.24)
2 - .ATCTGGAT. 1558 (93.24)
2 - [ATTCAGAT] 554 (86.81)
2 - [ATTCAGAT] 134 (86.81)
3 + [ATTCTGAT] 705 (85.56)
3 - [ATCAGAAT] 705 (85.56)
4 + [ATCTGAAT] 570 (86.81)
4 + [TTCCAGAT] 629 (85.26)
4 + [ATCCGAAA] 1042 (85.59)
4 - [TTTCGGAT] 1042 (85.59)
4 - [ATCTGGAA] 629 (85.26)
4 - [ATTCAGAT] 570 (86.81)
5 + .AACCGGAT. 684 (90.76)
5 + [ATTAGGAT] 1048 (85.56)
5 + [ATTCAGAT] 1148 (86.81)
5 - [ATCTGAAT] 1148 (86.81)
5 - [ATCCTAAT] 1048 (85.56)
5 - .ATCCGGTT. 684 (90.76)
6 + [ATTCGGAA] 145 (85.59)
6 - [TTCCGAAT] 145 (85.59)
8 + .ATCCGAAT. 277 (93.57)
8 + .ATCCGAAT. 1081 (93.57)
8 - .ATTCGGAT. 1081 (93.57)
8 - .ATTCGGAT. 277 (93.57)
9 + [ATCTAGAT] 81 (86.48)
9 + [ATCTAGAT] 558 (86.48)
9 + [ATCTGAAT] 1794 (86.81)
9 - [ATTCAGAT] 1794 (86.81)
9 - [ATCTAGAT] 558 (86.48)
9 - [ATCTAGAT] 81 (86.48)
10 + [TTTCGGAT] 13 (85.59)
10 + [ATCTGAAT] 1336 (86.81)
10 - [ATTCAGAT] 1336 (86.81)
10 - [ATCCGAAA] 13 (85.59)
11 + [ATCTTGAT] 65 (85.23)
11 + .ATCCAGAT. 137 (93.24)
11 - .ATCTGGAT. 137 (93.24)
11 - [ATCAAGAT] 65 (85.23)
14 + [ATCTAGAT] 433 (86.48)
14 + [ATTCGAAT] 973 (87.15)
14 - [ATTCGAAT] 973 (87.15)
14 - [ATCTAGAT] 433 (86.48)
15 + [ATCTTGAT] 584 (85.23)
15 - [ATCAAGAT] 584 (85.23)
16 + [ATCAAGAT] 42 (85.23)
16 - [ATCTTGAT] 42 (85.23)
17 + [TTTCGGAT] 207 (85.59)
17 + [TTCCGAAT] 491 (85.59)
17 + [ATCCGGAG] 955 (88.16)
17 + [ATTCGTAT] 1486 (85.03)
17 - [ATACGAAT] 1486 (85.03)
17 - [CTCCGGAT] 955 (88.16)
17 - [ATTCGGAA] 491 (85.59)
17 - [ATCCGAAA] 207 (85.59)
18 + [ATCTTGAT] 398 (85.23)
18 + [ATTCGAAT] 450 (87.15)
18 - [ATTCGAAT] 450 (87.15)
18 - [ATCAAGAT] 398 (85.23)
19 + [ATGCGGAT] 712 (89.06)
19 + [ATACGAAT] 854 (85.03)
19 - [ATTCGTAT] 854 (85.03)
19 - [ATCCGCAT] 712 (89.06)
21 + [ATCTTGAT] 392 (85.23)
21 + [ATTCGAAT] 439 (87.15)
21 - [ATTCGAAT] 439 (87.15)
21 - [ATCAAGAT] 392 (85.23)
24 + [GTCCGGAT] 119 (85.89)
24 + .ATCCGGAT. 476 (100.00)
24 + [GTCCGGAT] 578 (85.89)
24 - [ATCCGGAC] 578 (85.89)
24 - .ATCCGGAT. 476 (100.00)
24 - [ATCCGGAC] 119 (85.89)
26 + [ATCTGAAT] 1652 (86.81)
26 - [ATTCAGAT] 1652 (86.81)
29 + [ATCTGGAA] 60 (85.26)
29 + [ATCTGAAT] 126 (86.81)
29 + [ATCCGAAA] 859 (85.59)
29 + [ATCCAGAA] 882 (85.26)
29 - [TTCTGGAT] 882 (85.26)
29 - [TTTCGGAT] 859 (85.59)
29 - [ATTCAGAT] 126 (86.81)
29 - [TTCCAGAT] 60 (85.26)
30 + [TTCCGAAT] 926 (85.59)
30 + [ATCCGAAA] 964 (85.59)
30 - [TTTCGGAT] 964 (85.59)
30 - [ATTCGGAA] 926 (85.59)
31 + [ATTCGTAT] 1198 (85.03)
31 - [ATACGAAT] 1198 (85.03)
32 + [ATCTGGAA] 365 (85.26)
32 + .ATCAGGAT. 605 (91.99)
32 + [ATCTAGAT] 1694 (86.48)
32 - [ATCTAGAT] 1694 (86.48)
32 - .ATCCTGAT. 605 (91.99)
32 - [TTCCAGAT] 365 (85.26)
33 + [TTCCGAAT] 602 (85.59)
33 - [ATTCGGAA] 602 (85.59)
35 + [TTCCAGAT] 441 (85.26)
35 + [ATCTTGAT] 540 (85.23)
35 - [ATCAAGAT] 540 (85.23)
35 - [ATCTGGAA] 441 (85.26)
36 + [ATCAGAAT] 1548 (85.56)
36 - [ATTCTGAT] 1548 (85.56)
38 + .ATCCGGTT. 426 (90.76)
38 - .AACCGGAT. 426 (90.76)
41 + .TTCCGGAT. 1315 (92.02)
41 - .ATCCGGAA. 1315 (92.02)
42 + [TTCTGGAT] 144 (85.26)
42 - [ATCCAGAA] 144 (85.26)
43 + [ATCCCGAT] 511 (89.23)
43 - [ATCGGGAT] 511 (89.23)
44 + .ATCAGGAT. 498 (91.99)
44 - .ATCCTGAT. 498 (91.99)
45 + .TTCCGGAT. 352 (92.02)
45 + [ATCTGAAT] 1344 (86.81)
45 - [ATTCAGAT] 1344 (86.81)
45 - .ATCCGGAA. 352 (92.02)
46 + .AACCGGAT. 259 (90.76)
46 + [ATTCGAAT] 710 (87.15)
46 - [ATTCGAAT] 710 (87.15)
46 - .ATCCGGTT. 259 (90.76)
47 + [ATCGGGAT] 711 (89.23)
47 + [ATTCGGAA] 1145 (85.59)
47 + [ATTCTGAT] 1930 (85.56)
47 - [ATCAGAAT] 1930 (85.56)
47 - [TTCCGAAT] 1145 (85.59)
47 - [ATCCCGAT] 711 (89.23)
48 + [ATCAAGAT] 51 (85.23)
48 - [ATCTTGAT] 51 (85.23)
49 + [ATCCAAAT] 497 (86.81)
49 + [ATTCGAAT] 626 (87.15)
49 - [ATTCGAAT] 626 (87.15)
49 - [ATTTGGAT] 497 (86.81)
50 + .ATCCGGTT. 70 (90.76)
50 - .AACCGGAT. 70 (90.76)
51 + [TTTCGGAT] 484 (85.59)
51 - [ATCCGAAA] 484 (85.59)
52 + [ATTCAGAT] 667 (86.81)
52 + [ATCTGGAA] 1096 (85.26)
52 + [ATCCTAAT] 1485 (85.56)
52 + [ATTCGAAT] 1850 (87.15)
52 - [ATTCGAAT] 1850 (87.15)
52 - [ATTAGGAT] 1485 (85.56)
52 - [TTCCAGAT] 1096 (85.26)
52 - [ATCTGAAT] 667 (86.81)
53 + [ATTCGAAT] 431 (87.15)
53 + [ATTCGTAT] 458 (85.03)
53 - [ATACGAAT] 458 (85.03)
53 - [ATTCGAAT] 431 (87.15)
54 + [ATCAGAAT] 555 (85.56)
54 - [ATTCTGAT] 555 (85.56)
55 + [ATCTGAAT] 745 (86.81)
55 + [ATTCTGAT] 751 (85.56)
55 + .TTCCGGAT. 798 (92.02)
55 - .ATCCGGAA. 798 (92.02)
55 - [ATCAGAAT] 751 (85.56)
55 - [ATTCAGAT] 745 (86.81)
56 + [ATCCAGAA] 50 (85.26)
56 + [ATCCGGAG] 643 (88.16)
56 - [CTCCGGAT] 643 (88.16)
56 - [TTCTGGAT] 50 (85.26)
57 + .ATCCGGAA. 125 (92.02)
57 + [ATCCGGAG] 784 (88.16)
57 + [TTCCAGAT] 967 (85.26)
57 - [ATCTGGAA] 967 (85.26)
57 - [CTCCGGAT] 784 (88.16)
57 - .TTCCGGAT. 125 (92.02)
58 + .ATCCGGAA. 387 (92.02)
58 + .ATCCAGAT. 677 (93.24)
58 - .ATCTGGAT. 677 (93.24)
58 - .TTCCGGAT. 387 (92.02)
59 + .ATCCAGAT. 651 (93.24)
59 - .ATCTGGAT. 651 (93.24)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 400 24 14 60| 31 0 0 5
2 47 16 13 422| 4 0 0 32
3 46 350 26 76| 0 34 0 2
4 52 349 27 70| 2 30 0 4
5 70 27 349 52| 4 0 30 2
6 76 26 350 46| 2 0 34 0
7 422 13 16 47| 32 0 0 4
8 60 14 24 400| 5 0 0 31