Your Weeder Web Results

NEW: Starting a large job on file /tmp/motif_master/12091_WEEDER/mec3_t69_u2_3_19.fa

Organism code: CE

Processing both strands

/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/12091_WEEDER/mec3_t69_u2_3_19.fa CE large S


Searching for motifs of length 6 with 1 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12091_WEEDER/mec3_t69_u2_3_19.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) CGCTGC 1.43
2) CGGGGC 1.34
3) GGGCGG 1.33
4) GCTGCG 1.31
5) AGGGCG 1.26
6) CCTCCC 1.24
7) GGCGCG 1.24
8) CGTCGA 1.19
9) GCGCTG 1.19
10) CTGCGC 1.17

Elapsed time : 0 min. 0 sec.


Searching for motifs of length 8 with 2 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12091_WEEDER/mec3_t69_u2_3_19.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) GGTCGTGC 1.73
2) GCGCAGCG 1.52
3) CAGCGCTG 1.52
4) GTCGTGCC 1.47
5) CGCGCAGC 1.46
6) CGCTGACG 1.43
7) CGGCGCGT 1.32
8) GTCGTGCA 1.31
9) ACGACCGC 1.31
10) CGACGCAC 1.30

Elapsed time : 0 min. 6 sec.


Searching for motifs of length 10 with 3 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12091_WEEDER/mec3_t69_u2_3_19.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) CCTCCCGCAC 1.66
2) GGCACGACCC 1.66
3) GTGTGGGAGG 1.63
4) TGGTCGTGCC 1.53
5) CGCGCTGACG 1.48
6) CGCGCAGCGG 1.47
7) TGGCACGACC 1.46
8) CGGCAGCCCC 1.43
9) GGCAGCCCCG 1.43
10) GCTGCACGAC 1.37

Elapsed time : 2 min. 5 sec.


Searching for motifs of length 12 with 4 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12091_WEEDER/mec3_t69_u2_3_19.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) GGGGATGGGCGG 2.60
2) AGTGTGGGAGGA 2.36
3) CGTGTGGGAGGA 2.36
4) CTGCCGCATACA 2.32
5) ATCGACGGCGAG 2.31
6) AATCGACGGCGA 2.31
7) GAGCGAGAGATC 2.30
8) GCGCGTCGACTC 2.29
9) CGGCGGGGCGAA 2.28
10) GGGAGGAGCGAA 2.28

Elapsed time : 15 min. 52 sec.


Your sequences:

Sequence 1 : >ID1043663_Y48G8AL.8a_upstream_2kb
Sequence 2 : >ID1046842_F31C3.1_upstream_2kb
Sequence 3 : >ID1049160_C06A8.3_upstream_2kb
Sequence 4 : >ID1052157_B0336.11a_upstream_2kb
Sequence 5 : >ID1052593_F37C12.9_upstream_2kb
Sequence 6 : >ID1052855_D2007.2_upstream_2kb
Sequence 7 : >ID1053341_K03H1.4_upstream_2kb
Sequence 8 : >ID1054985_F29B9.4a_upstream_2kb
Sequence 9 : >ID1055014_E04A4.8_upstream_2kb
Sequence 10 : >ID1055618_D2024.6_upstream_2kb
Sequence 11 : >ID1055824_F57H12.1_upstream_2kb
Sequence 12 : >ID1057333_Y45F10D.12_upstream_2kb
Sequence 13 : >ID1058556_F54E2.2_upstream_2kb
Sequence 14 : >ID1059650_T07H8.4a_upstream_2kb
Sequence 15 : >ID1061636_F58E10.4_upstream_2kb
Sequence 16 : >ID1063854_F52E4.1a_upstream_2kb
Sequence 17 : >ID1064242_M03F4.7a_upstream_2kb
Sequence 18 : >ID1064497_W05H9.1_upstream_2kb
Sequence 19 : >ID1065528_C03A3.3_upstream_2kb
Sequence 20 : >ID1065589_C35C5.5_upstream_2kb
Sequence 21 : >ID1065908_F46G10.6_upstream_2kb


**** MY ADVICE ****


*** Interesting motifs (highest-ranking) seem to be :


CGCTGC
GCAGCG

4 redundant motifs found:
GCGCAGCG - CTGCGC - GCGCTG - GCTGCG -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TGTTGC] 41 (86.72)
1 + .CGCGGC. 72 (90.23)
1 + .CGCTGC. 87 (100.00)
1 - .CGCAGC. 88 (93.81)
1 - .CGCCGC. 73 (90.23)
2 + [CGCTGT] 72 (87.73)
3 - [CGCTCA] 176 (85.83)
3 - .CGCTCC. 117 (92.26)
3 - .CGCTGA. 54 (93.58)
3 - .CGCTGA. 22 (93.58)
4 + [CGTTCC] 85 (85.24)
4 - .TGCTGC. 14 (93.73)
5 + .GGCTGC. 89 (91.47)
5 + [CGTAGC] 94 (86.80)
5 - [CGCTAC] 95 (89.99)
5 - .CGCAGC. 90 (93.81)
6 + .CGCTGA. 59 (93.58)
6 + .TGCTGC. 95 (93.73)
8 - [CGGTGC] 88 (89.99)
8 - .CGTTGC. 57 (92.98)
9 + .CGCTCC. 6 (92.26)
9 + .CGCTCC. 14 (92.26)
9 + .CACTGC. 78 (91.17)
9 + [CGTTGA] 100 (86.56)
9 - [TGTTGC] 65 (86.72)
10 - [CGCTTC] 14 (87.73)
11 + [GGCTGA] 105 (85.05)
11 + .CGTTGC. 181 (92.98)
12 + .CGCTCC. 27 (92.26)
12 - [CCCTGC] 204 (87.59)
12 - [CGCTAC] 129 (89.99)
12 - .CGTTGC. 46 (92.98)
12 - .CGTTGC. 15 (92.98)
13 + .CGCAGC. 30 (93.81)
13 - .CGCTGC. 31 (100.00)
14 + .CACTGC. 53 (91.17)
15 + .GGCTGC. 52 (91.47)
15 + .TGCTGC. 55 (93.73)
15 + .CGCTGA. 129 (93.58)
15 + .CGCAGC. 159 (93.81)
15 + .CGCTGA. 164 (93.58)
15 - .CGCTGC. 160 (100.00)
15 - .CGCAGC. 56 (93.81)
15 - .CGTTGC. 47 (92.98)
16 + .CGCTGC. 37 (100.00)
16 - [TGCAGC] 38 (87.55)
16 - [CGCAGA] 31 (87.39)
17 + .TGCTGC. 77 (93.73)
17 + .TGCTGC. 180 (93.73)
17 + [CTCTGC] 206 (87.59)
17 + [GGCAGC] 223 (85.29)
17 + [CGGTGC] 435 (89.99)
17 - .TGCTGC. 290 (93.73)
17 - .GGCTGC. 224 (91.47)
17 - .CGCAGC. 181 (93.81)
17 - [TGCAGC] 78 (87.55)
19 + [GGCAGC] 9 (85.29)
19 + .CACTGC. 146 (91.17)
19 - [CGCTCA] 117 (85.83)
19 - .CGCTGC. 10 (100.00)
20 + [CGCACC] 28 (86.07)
20 + .CGCGGC. 60 (90.23)
21 + [TGCTCC] 26 (85.99)
21 + [GGCTGA] 102 (85.05)
21 + .CGCTGA. 123 (93.58)
21 - .CGCCGC. 142 (90.23)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 41 3 6| 0 33 3 6
2 3 1 45 1| 3 0 39 0
3 0 43 2 5| 0 37 0 5
4 6 2 2 40| 6 2 2 32
5 2 4 43 1| 0 4 38 0
6 6 43 0 1| 6 36 0 0






GGTCGTGC
GCACGACC

5 redundant motifs found:
TGGCACGACC - TGGTCGTGCC - GGCACGACCC - GTCGTGCA - GTCGTGCC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [GATCGCGG] 69 (89.20)
1 + [GGTTTCGC] 100 (86.19)
1 + [GCTTGCGC] 106 (85.42)
1 - [CGTAGTCC] 93 (85.24)
1 - .GGTCTCGC. 76 (92.48)
1 - [GATCTTGT] 65 (86.95)
2 + [GGTCAAGG] 8 (86.69)
2 - .GGTGGTGG. 105 (92.71)
2 - .GGTAGTGT. 99 (91.20)
4 + [TATCGTTC] 82 (85.12)
4 - .GATGGTGC. 72 (92.08)
4 - [GTGAGTGC] 17 (85.45)
4 - .GCTCATGC. 8 (90.09)
6 + .GGTCGTGC. 24 (100.00)
7 + .GGTCGTCG. 32 (92.37)
8 + .TGTCGTGC. 139 (95.76)
8 + [TTTCGTGG] 158 (85.96)
8 - [GGGTTTGC] 223 (85.34)
8 - [TTGCGTGC] 219 (85.12)
9 + [GGTTTTCC] 117 (85.34)
9 - [GGCAGTGC] 77 (89.47)
9 - [GGGAGCGG] 13 (85.08)
9 - .GGTGGAGC. 7 (91.20)
11 + [GGGCGCGT] 92 (87.47)
11 + .GGTCTCGC. 113 (92.48)
11 + [GCTATTGC] 185 (87.07)
11 - .TGTCGTCC. 160 (91.53)
11 - .GATCGTGG. 120 (92.59)
12 + .GGGCGCGC. 9 (92.37)
12 + .GGTCTCGC. 40 (92.48)
12 - [TGTCGTTG] 16 (85.74)
13 + [GGGCTTCC] 91 (87.40)
14 - [GGCAGTGG] 52 (86.08)
14 - .GGTCGTGC. 45 (100.00)
15 + .GGTCGTGC. 41 (100.00)
15 + [GCTCGTCT] 101 (85.96)
15 + [CGTCTTCC] 104 (85.01)
15 - .GCGCGTGC. 124 (90.86)
16 + [TGTCACGC] 54 (87.36)
16 - .TGTAGTGC. 75 (91.86)
17 + [GGGCGTCT] 375 (86.63)
17 + [TGTCTTCC] 399 (87.40)
17 + [GACGGTGC] 433 (85.45)
17 - .GGTCAAGC. 460 (90.09)
17 - [GCTCACGC] 284 (86.69)
17 - .CGTCGTGC. 81 (93.37)
17 - [TGTCGTCT] 29 (86.63)
18 + [GGTGGCTC] 76 (86.08)
19 + .GATCGTGT. 126 (91.08)
19 + [TGTCTTTC] 298 (85.01)
19 - [GGTTACGC] 362 (85.30)
19 - [GTTTGTGC] 344 (87.30)
20 - [GCTAGTGG] 87 (87.81)
20 - .GGTCGTCG. 21 (92.37)
21 + [GGCGGCGC] 141 (86.08)
21 - [GGGCGTTC] 175 (89.14)
21 - [GTGGGTGC] 91 (85.45)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 1 21 3| 0 1 18 3
2 3 2 19 1| 3 2 17 0
3 0 1 3 21| 0 0 2 20
4 3 18 3 1| 2 17 3 0
5 2 0 20 3| 2 0 17 3
6 2 4 0 19| 2 4 0 16
7 0 3 21 1| 0 3 19 0
8 0 19 4 2| 0 16 4 2






GGCACGACCC
GGGTCGTGCC

3 redundant motifs found:
TGGCACGACC - GTCGTGCC - GGTCGTGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .GGCGAGACCC. 75 (94.00)
1 - .GGCAACACTC. 38 (91.08)
2 + [GGTACCACAC] 93 (88.31)
2 + .ACCACCACCC. 104 (90.66)
2 - [GCCTTGACCC] 7 (86.36)
4 + [GGCATGAGCA] 7 (86.37)
4 + [GCCAGCACCA] 68 (85.28)
4 + [AGCACCATCC] 71 (89.04)
6 - .GGCACGACCA. 23 (97.00)
8 + [GACACAACTC] 69 (86.31)
8 - .GGCACGACAA. 138 (94.28)
11 + [GCCACGATCG] 119 (87.60)
11 - .GGCGAGACCC. 112 (94.00)
12 + [GCAACGACAC] 15 (89.39)
12 - .TGCGAGACCC. 39 (91.14)
14 + .GGCACGACCC. 44 (100.00)
15 - .TGCACGACCA. 40 (94.13)
16 + .TGCACTACAC. 74 (90.21)
17 + [TGCACGACGG] 80 (86.91)
20 + [GGCGCGGCTC] 58 (88.65)
21 + [AGAACGCCCC] 174 (85.37)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 3 0 15 4| 1 0 6 3
2 1 4 17 0| 0 1 9 0
3 2 18 1 1| 0 10 0 0
4 17 0 4 1| 7 0 3 0
5 4 15 1 2| 4 6 0 0
6 2 4 14 2| 0 2 7 1
7 19 1 2 0| 10 0 0 0
8 1 18 1 2| 0 10 0 0
9 4 14 1 3| 2 7 0 1
10 4 16 2 0| 3 7 0 0






GGGGATGGGCGG
CCGCCCATCCCC

0 redundant motifs found:


Best occurrences (match percentage):
Seq St oligo pos match
1 - [GGGGAGAGGCAA] 43 (85.44)
2 - [AGGGGGGGGAGG] 41 (88.08)
2 - [GGGGAGGTGAAG] 36 (88.34)
8 - .GAGGATGGGAGG. 15 (94.59)
9 - [GGGGAGCGGTGG] 10 (86.63)
14 + .GGGGATGGGCGG. 18 (100.00)
16 - [AGGGATGTGAGG] 18 (89.61)
19 - [GGGGTTGGGGAG] 248 (85.90)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 5 3 15 3| 0 0 2 0
2 6 2 17 1| 1 0 1 0
3 3 1 21 1| 0 0 2 0
4 3 3 19 1| 0 0 2 0
5 21 1 3 1| 2 0 0 0
6 2 3 8 13| 0 0 0 2
7 3 1 22 0| 0 0 2 0
8 3 1 19 3| 0 0 2 0
9 2 3 19 2| 0 0 2 0
10 5 14 4 3| 1 1 0 0
11 6 1 18 1| 0 0 2 0
12 3 1 22 0| 0 0 2 0





*** Interesting motifs (not highest-ranking) can also be :


CCTCCCGCAC
GTGCGGGAGG

0 redundant motifs found:


Best occurrences (match percentage):
Seq St oligo pos match
2 + .CCTCCCCCCC. 41 (93.20)
2 + [CCCCCCCCTC] 44 (85.95)
2 + [ACTCACTCAC] 199 (89.04)
3 + [CATCCCTCAT] 214 (86.13)
3 - .TCTCCCTCTC. 154 (90.52)
3 - [TCTCTCTCTC] 136 (85.32)
3 - [CCTTTCGCTC] 118 (86.17)
3 - .CCTCCCACAC. 109 (97.03)
4 + [ACTCACACTC] 40 (86.63)
4 + .CCGCCAGCAC. 66 (90.13)
8 + [CCTCCCATCC] 15 (87.13)
9 + [ACTGCCGCAT] 79 (86.81)
13 - .CCTACCGCCC. 36 (90.50)
13 - [CCGCCCGCTG] 32 (85.02)
14 - .CCTCCCACAC. 106 (97.03)
14 - [ATTCCCGCCC] 24 (86.75)
17 + [CCGCCCTCCC] 137 (89.20)
17 + .CCTCCCGCAT. 141 (95.54)
17 + [TCTCTCTCTC] 264 (85.32)
17 + [TCTCTCTCTC] 266 (85.32)
19 + .CCTCCCGCAC. 305 (100.00)
19 - [TCTCTCGCTC] 118 (88.29)
20 + [ACGACCGCAC] 23 (85.66)
20 - [ACTGCCCCTC] 8 (85.32)
21 + [CCTTCTGCTC] 21 (85.02)
21 + [CCTCCCTTTC] 156 (87.99)
21 - .CCTCCAACAC. 133 (91.73)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 5 20 1 4| 0 8 0 1
2 2 25 1 2| 0 9 0 0
3 1 1 4 24| 0 0 1 8
4 2 23 3 2| 1 8 0 0
5 4 23 0 3| 0 9 0 0
6 3 24 1 2| 2 7 0 0
7 5 4 16 5| 3 1 4 1
8 1 27 0 2| 0 9 0 0
9 18 5 0 7| 6 2 0 1
10 2 23 1 4| 0 8 0 1






CGTGTGGGAGGA
TCCTCCCACACG

2 redundant motifs found:
AGTGTGGGAGGA - GTGTGGGAGG -

Best occurrences (match percentage):
Seq St oligo pos match
2 - [CGAGGGGGGGGA] 43 (85.19)
3 + .CGTGTGGGAGGA. 108 (100.00)
8 - [AGGATGGGAGGA] 14 (89.78)
13 + [CGGGCGGTAGGA] 35 (88.42)
14 + .AGTGTGGGAGGA. 105 (97.44)
17 - [CGATTGGAAGGA] 364 (87.97)
17 - [CGGGAGGGCGGA] 136 (88.62)
21 + .CGTGTTGGAGGC. 132 (91.85)
21 - [AGAAAGGGAGGA] 155 (85.58)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 5 13 4 5| 1 2 0 0
2 1 2 23 1| 0 0 3 0
3 5 1 6 15| 0 0 0 3
4 3 0 21 3| 0 0 3 0
5 4 3 4 16| 0 0 0 3
6 1 0 21 5| 0 0 2 1
7 2 3 20 2| 0 0 3 0
8 4 3 17 3| 0 0 3 0
9 21 3 1 2| 3 0 0 0
10 2 2 21 2| 0 0 3 0
11 1 3 22 1| 0 0 3 0
12 20 4 1 2| 2 1 0 0






GCGCAGCG
CGCTGCGC

5 redundant motifs found:
CGCGCAGCGG - CGCGCAGC - CTGCGC - GCTGCG - CGCTGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [TCGCGGCG] 71 (87.64)
1 + [TCGCTGCG] 86 (87.64)
1 - [CCGCAGCG] 87 (88.53)
1 - [TCGCCGCG] 72 (87.64)
2 - [GCGCAGTA] 67 (85.42)
3 + [GAGGAGCG] 115 (86.82)
4 + [GAGCAGCA] 12 (88.33)
5 + [GCGGGGCG] 45 (85.56)
5 + [GCGTAGCG] 93 (85.06)
6 - [GAGCAGCA] 95 (88.33)
6 - [GCTCAGCG] 59 (89.18)
12 + [GCGCAACG] 13 (89.18)
13 + .GCGCAGCG. 29 (100.00)
15 + .TCGCAGCG. 158 (95.19)
15 - .GCGCTGCG. 159 (92.45)
15 - [TCGCAGCA] 55 (89.81)
16 + [GCGCTGCA] 36 (87.07)
16 - [TTGCAGCG] 37 (86.58)
16 - [GCGCAGAA] 30 (85.42)
17 + [GAGCAGCA] 288 (88.33)
17 - [GTGCAGCA] 77 (86.02)
19 + [TGGCAGCG] 8 (85.39)
19 - [TCGCAGTG] 146 (85.98)
20 - [GAGCCGCG] 60 (86.16)
21 + [GCGGCGCG] 142 (85.56)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 2 2 32 10| 0 0 2 1
2 7 32 3 4| 0 3 0 0
3 1 1 41 3| 0 0 3 0
4 1 37 7 1| 0 3 0 0
5 31 5 5 5| 2 0 0 1
6 3 1 41 1| 0 0 3 0
7 4 37 1 4| 0 3 0 0
8 9 2 33 2| 0 0 3 0






AGTGTGGGAGGA
TCCTCCCACACT

2 redundant motifs found:
CGTGTGGGAGGA - GTGTGGGAGG -

Best occurrences (match percentage):
Seq St oligo pos match
3 + .CGTGTGGGAGGA. 108 (95.23)
8 - [AGGATGGGAGGA] 14 (89.86)
14 + .AGTGTGGGAGGA. 105 (100.00)
21 - [AGAAAGGGAGGA] 155 (86.22)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 24 6 4 5| 1 1 0 0
2 3 2 29 5| 0 0 2 0
3 7 2 7 23| 0 0 0 2
4 5 1 29 4| 0 0 2 0
5 8 3 5 23| 0 0 0 2
6 4 2 29 4| 0 0 2 0
7 4 4 24 7| 0 0 2 0
8 1 3 32 3| 0 0 2 0
9 24 6 5 4| 2 0 0 0
10 4 3 29 3| 0 0 2 0
11 3 3 31 2| 0 0 2 0
12 28 3 4 4| 2 0 0 0






GCTGCG
CGCAGC

4 redundant motifs found:
CGCGCAGC - GCGCAGCG - CTGCGC - CGCTGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .GCGGCG. 73 (90.77)
1 + .GCTGCG. 88 (100.00)
1 - .GCAGCG. 87 (93.89)
1 - .GCCGCG. 72 (90.77)
2 + .ACTGCG. 68 (90.14)
4 - .GCTGCT. 13 (93.02)
5 + .GCTGCG. 90 (100.00)
5 + [GTAGCG] 95 (85.51)
5 - [GCTACG] 94 (87.88)
6 + .GCTGAG. 60 (91.72)
6 + .GCTGCT. 96 (93.02)
8 - .GCTTCG. 92 (90.24)
9 - .GTTGCG. 64 (91.62)
12 + [GTAGCG] 129 (85.51)
12 - .GTTGCG. 45 (91.62)
12 - .GTTGCG. 14 (91.62)
13 + .GCAGCG. 31 (93.89)
13 - .GCTGCG. 30 (100.00)
14 + .GCTTCG. 92 (90.24)
15 + .GCTGCT. 53 (93.02)
15 + .GCTGCG. 56 (100.00)
15 + .GCAGCG. 160 (93.89)
15 + .GCTGAG. 165 (91.72)
15 - .GCTGCG. 159 (100.00)
16 + [TCTGCG] 31 (87.78)
16 + .GCTGCA. 38 (90.65)
16 - .GCTGTG. 63 (90.34)
16 - .GCAGCG. 37 (93.89)
17 + .GCTGTG. 37 (90.34)
17 + .GCTGCA. 78 (90.65)
17 + .GCTGCG. 181 (100.00)
17 - .GCTGCT. 289 (93.02)
17 - .GCTGCC. 223 (90.65)
17 - [GCAGAG] 206 (85.61)
19 + .GCAGCG. 10 (93.89)
19 + .ACTGCG. 147 (90.14)
19 - .GCTGCC. 9 (90.65)
20 - .GCCGCG. 60 (90.77)
20 - [GGTGCG] 28 (87.88)
21 + .GCTGAG. 103 (91.72)
21 + .GCGGCG. 142 (90.77)
21 - [GCTCCG] 42 (87.88)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 2 0 36 1| 2 0 33 0
2 0 35 1 3| 0 32 0 3
3 5 2 2 30| 5 2 2 26
4 1 1 35 2| 0 0 33 2
5 3 34 0 2| 3 30 0 2
6 2 2 31 4| 2 2 27 4






GTCGTGCC
GGCACGAC

5 redundant motifs found:
TGGCACGACC - TGGTCGTGCC - GGCACGACCC - GTCGTGCA - GGTCGTGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 + [GTGTTGCC] 40 (89.63)
1 - .GTCTCGCC. 75 (91.08)
2 + [GTCTCGTC] 29 (85.40)
2 + [CTCGTCCC] 51 (87.75)
2 - [GTGGTACC] 93 (85.73)
4 + [ATCGTTCC] 83 (87.75)
6 + .GTCGTGCC. 25 (100.00)
6 + [TTCGAGCC] 52 (86.06)
7 - [GTCGGGTC] 68 (88.08)
8 + .GTCGTGCC. 140 (100.00)
8 - [GTTGTGTC] 69 (85.44)
11 + .GTCTCGCC. 114 (91.08)
11 - [GTCGTCCA] 159 (89.64)
11 - [GTCCAGCC] 156 (86.20)
11 - [ATCGTGGC] 119 (86.28)
12 + [GTCTCGCA] 41 (86.11)
12 - [GTCGTTGC] 15 (87.75)
14 - .GTCGTGCC. 44 (100.00)
15 + .GTCGTGCA. 42 (95.03)
15 + [GTGGGGCC] 255 (88.08)
15 - [GACGAGCC] 100 (87.81)
16 - [GTAGTGCA] 74 (86.14)
17 + [GTCTCTCC] 152 (85.70)
17 - .GTCGTGCA. 80 (95.03)
17 - [GTCGTCTC] 28 (88.94)
19 + [GTCTTTCC] 299 (89.92)
20 - [GCCGCGCC] 58 (86.63)
21 - [GACGCGCC] 144 (88.65)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 2 2 21 1| 0 0 7 0
2 2 1 0 23| 0 0 0 7
3 1 21 3 1| 0 7 0 0
4 1 1 20 4| 0 0 5 2
5 3 4 2 17| 0 2 0 5
6 1 3 19 3| 0 0 7 0
7 0 21 2 3| 0 7 0 0
8 4 22 0 0| 2 5 0 0






TGGTCGTGCC
GGCACGACCA

3 redundant motifs found:
TGGCACGACC - GTCGTGCC - GGTCGTGC -

Best occurrences (match percentage):
Seq St oligo pos match
1 - .GGGTCTCGCC. 75 (90.88)
2 - [TGGCCTTGAC] 9 (87.46)
3 + [TGGACATCCC] 210 (86.11)
4 - [TGGTGCTGGC] 68 (85.11)
4 - .TGCTCATGCC. 7 (93.10)
5 - [TGGTCTCACC] 77 (88.02)
6 + .TGGTCGTGCC. 23 (100.00)
6 + [TTTTCGAGCC] 50 (86.57)
8 + .TTGTCGTGCC. 138 (94.79)
11 + .GGGTCTCGCC. 112 (90.88)
11 + .TGCTATTGCC. 184 (90.63)
11 - [TCGTCCAGCC] 156 (87.59)
12 + [GGGTCTCGCA] 39 (85.53)
12 + .TGTTTTTGCC. 135 (90.35)
14 - .GGGTCGTGCC. 44 (95.75)
15 + .TGGTCGTGCA. 40 (94.66)
16 - [TGTGCGTGAC] 55 (85.76)
17 - [TGGTCATCAC] 254 (87.34)
17 - [CCGTCGTGCA] 80 (85.19)
19 - [TGCTACTGCC] 28 (88.98)
21 - [TCGACGCGCC] 144 (86.97)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 0 2 3 18| 0 0 3 6
2 0 3 18 2| 0 0 8 1
3 1 3 15 4| 0 2 6 1
4 2 1 1 19| 0 0 0 9
5 3 17 1 2| 1 7 0 1
6 3 3 11 6| 1 0 4 4
7 2 4 0 17| 0 2 0 7
8 1 2 20 0| 0 0 9 0
9 3 17 2 1| 0 9 0 0
10 2 19 1 1| 1 8 0 0






CGCGCAGC
GCTGCGCG

4 redundant motifs found:
CGCGCAGCGG - GCGCAGCG - CTGCGC - GCTGCG -

Best occurrences (match percentage):
Seq St oligo pos match
1 - [CTCGCCGC] 73 (86.09)
4 + [TGAGCAGC] 11 (88.20)
5 + [TGCGTAGC] 92 (86.45)
5 - [TACGCAGC] 90 (86.56)
6 + [CGAGCCGC] 54 (86.89)
6 - [TGCTCAGC] 60 (85.16)
9 + [CACGCAAC] 62 (85.24)
12 + .CGCGCAAC. 12 (93.44)
12 + [CTCGCAAC] 43 (86.09)
13 + .CGCGCAGC. 28 (100.00)
13 - [CGCGCCTC] 83 (85.35)
13 - [CGCGTAAC] 24 (85.14)
15 + [TTCGCAGC] 157 (87.40)
15 + [CGAGTAGC] 175 (85.14)
15 - [TTCGCAGC] 56 (87.40)
16 + .CGCGCTGC. 35 (91.91)
16 - .CGCGCAGA. 31 (90.21)
17 + [TGAGCAGC] 287 (88.20)
17 - .CGTGCAGC. 78 (90.82)
19 + [CGCGTAAC] 361 (85.14)
21 - .CGCGCCGC. 142 (93.44)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 3 32 3 8| 0 6 0 0
2 4 2 35 5| 0 0 6 0
3 6 34 3 3| 0 5 0 1
4 1 4 38 3| 0 0 6 0
5 2 36 4 4| 0 6 0 0
6 34 6 2 4| 4 1 0 1
7 6 2 34 4| 1 0 5 0
8 3 40 0 3| 1 5 0 0






CGCGCTGACG
CGTCAGCGCG

2 redundant motifs found:
CGCGCAGCGG - CGCTGACG -

Best occurrences (match percentage):
Seq St oligo pos match
2 + [TGCGCTGTTG] 70 (85.56)
3 - [TTCGCTGAAG] 52 (87.23)
4 + [CTCACTGAAG] 20 (88.41)
5 - .CGCCCCGCCG. 43 (90.61)
5 - .CCCGCCGACG. 40 (91.23)
6 - [GGCGGTGACT] 35 (85.75)
9 + [AGCACTGCCG] 76 (88.80)
9 - .CTCGCCGTCG. 28 (90.01)
11 + .CTGGCTGACG. 103 (91.76)
13 + [CGCGCAGCGG] 28 (88.96)
14 + [CCCACTGCCG] 51 (88.54)
15 + .CGCGCTGACG. 127 (100.00)
16 + [CGCGCTGCAA] 35 (89.01)
16 - [CGCGCAGAAA] 29 (87.64)
17 + [GGCGGAGACG] 24 (86.75)
17 + [CGCCCTCCCG] 138 (86.67)
17 + [GGCACTGACC] 236 (87.01)
17 - [CGGACAGACG] 378 (88.73)
17 - .GGGGCTGCCG. 222 (90.23)
19 - [GGGGCCGCCG] 51 (87.54)
20 - [CGCGCCGATT] 54 (87.06)
21 + [CACGCTGACC] 121 (86.17)
21 - .CGCGCCGCCT. 140 (91.35)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 2 19 5 3| 0 6 1 0
2 1 2 21 5| 0 1 4 2
3 0 23 4 2| 0 5 2 0
4 5 3 20 1| 0 1 6 0
5 0 26 2 1| 0 7 0 0
6 5 6 1 17| 0 4 0 3
7 0 2 26 1| 0 0 7 0
8 16 8 1 4| 3 3 0 1
9 4 21 2 2| 0 7 0 0
10 3 2 20 4| 0 0 6 1