Your Weeder Web Results

NEW: Starting a large job on file /tmp/motif_master/12017_WEEDER/mec3_top20_u2_2_19.fa

Organism code: CE

Processing both strands

/ulhhmi/alok/local/programs/Weeder1.2/weederlauncher.out /tmp/motif_master/12017_WEEDER/mec3_top20_u2_2_19.fa CE large S


Searching for motifs of length 6 with 1 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12017_WEEDER/mec3_top20_u2_2_19.fa -R 50 -O CE -W 6 -e 1 -N -S -T 10 )
1) ATTTTT 1.71
2) ATGCAT 1.25
3) TTATAA 0.78
4) AAGCTT 0.75
5) TCATGA 0.71
6) TGTACA 0.71
7) TAGCTT 0.60
8) GAGCTC 0.60
9) CTTGTA 0.57
10) TCTAGA 0.57

Elapsed time : 0 min. 2 sec.


Searching for motifs of length 8 with 2 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12017_WEEDER/mec3_top20_u2_2_19.fa -R 50 -O CE -W 8 -e 2 -N -S -T 10 )
1) AATGCATT 1.46
2) AGAGCTCT 1.19
3) TCCTAGGA 1.18
4) TACGCGTA 1.15
5) ATGATCAT 1.14
6) ATCATGAT 1.08
7) CATGCATG 1.08
8) ATCTAGAT 1.08
9) GCATATGC 1.03
10) AGTAGAAG 1.01

Elapsed time : 0 min. 48 sec.


Searching for motifs of length 10 with 3 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12017_WEEDER/mec3_top20_u2_2_19.fa -R 50 -O CE -W 10 -e 3 -N -S -T 10 )
1) ACAAACATTC 1.22
2) GTAACACTCA 1.22
3) ATCCTAAACA 1.20
4) TTCCTAGGAA 1.18
5) TGAGTGTTAG 1.14
6) AATACGTATT 1.09
7) TAAGTAGAAG 1.03
8) TAACACTCAT 1.03
9) AAGTAGAAGC 0.99
10) ATGCTAAACA 0.99

Elapsed time : 17 min. 26 sec.


Searching for motifs of length 12 with 4 mutations.....

(Actual commandline is :
./weederTFBS.out -f /tmp/motif_master/12017_WEEDER/mec3_top20_u2_2_19.fa -R 50 -O CE -W 12 -e 4 -N -S -T 10 )
1) GATGAGGCAGTA 2.51
2) GAAATGGAAACA 2.25
3) AATGAGAAGAAG 2.14
4) AGATGAAGCAGT 2.14
5) AAGATGAAGCAG 2.14
6) TATAGTGCATGA 2.11
7) AAGGCTATGGAA 2.07
8) ATCCTAAACAAC 2.07
9) AGATGAGGCAGT 2.06
10) CAAAGGCATATA 2.05

Elapsed time : 17 min. 56 sec.


Your sequences:

Sequence 1 : >ID1043663_Y48G8AL.8a_upstream_2kb
Sequence 2 : >ID1049160_C06A8.3_upstream_2kb
Sequence 3 : >ID1049331_F14E5.4_upstream_2kb
Sequence 4 : >ID1051493_C44B11.3_upstream_2kb
Sequence 5 : >ID1052601_F37C12.12_upstream_2kb
Sequence 6 : >ID1053864_ZC482.5_upstream_2kb
Sequence 7 : >ID1055823_F57H12.2_upstream_2kb
Sequence 8 : >ID1055825_F57H12.7_upstream_2kb
Sequence 9 : >ID1055999_F42A9.9_upstream_2kb
Sequence 10 : >ID1056523_F01D4.6a_upstream_2kb
Sequence 11 : >ID1057333_Y45F10D.12_upstream_2kb
Sequence 12 : >ID1060032_F20D6.5_upstream_2kb
Sequence 13 : >ID1060542_C50H2.3_upstream_2kb
Sequence 14 : >ID1061372_F15B9.1_upstream_2kb
Sequence 15 : >ID1063757_T07D1.3_upstream_2kb
Sequence 16 : >ID1064092_C52B9.9_upstream_2kb
Sequence 17 : >ID1064094_C52B9.6_upstream_2kb
Sequence 18 : >ID1064828_ZK154.3_upstream_2kb
Sequence 19 : >ID1065528_C03A3.3_upstream_2kb
Sequence 20 : >ID1066465_T01C8.7_upstream_2kb


**** MY ADVICE ****


*** Interesting motifs (highest-ranking) seem to be :


AATGCATT
AATGCATT

2 redundant motifs found:
CATGCATG - ATGCAT -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .AATACATT. 296 (93.66)
1 + [AATTAATT] 563 (89.80)
1 - [AATTAATT] 563 (89.80)
1 - .AATGTATT. 296 (93.66)
2 + [ATTTCATT] 363 (86.06)
2 + [AATGAAAT] 611 (86.06)
2 + [ATTTCATT] 1137 (86.06)
2 + [AAATCATT] 1305 (85.80)
2 + [AATTTATT] 1714 (88.56)
2 - [AATAAATT] 1714 (88.56)
2 - [AATGATTT] 1305 (85.80)
2 - [AATGAAAT] 1137 (86.06)
2 - [ATTTCATT] 611 (86.06)
2 - [AATGAAAT] 363 (86.06)
3 + [ATTTCATT] 204 (86.06)
3 + [CATGCATT] 660 (89.08)
3 + [AAATCATT] 766 (85.80)
3 + [ATTTCATT] 806 (86.06)
3 - [AATGAAAT] 806 (86.06)
3 - [AATGATTT] 766 (85.80)
3 - [AATGCATG] 660 (89.08)
3 - [AATGAAAT] 204 (86.06)
4 + .AATACATT. 493 (93.66)
4 + .AATGCATT. 575 (100.00)
4 + [AATTAATT] 816 (89.80)
4 - [AATTAATT] 816 (89.80)
4 - .AATGCATT. 575 (100.00)
4 - .AATGTATT. 493 (93.66)
5 + [AATGATTT] 59 (85.80)
5 + .AATGTATT. 224 (93.66)
5 + [CATGCATT] 881 (89.08)
5 + [AAATCATT] 1352 (85.80)
5 - [AATGATTT] 1352 (85.80)
5 - [AATGCATG] 881 (89.08)
5 - .AATACATT. 224 (93.66)
5 - [AAATCATT] 59 (85.80)
7 + .AATGCATT. 978 (100.00)
7 - .AATGCATT. 978 (100.00)
8 + [AAATCATT] 261 (85.80)
8 + [AATAAATT] 312 (88.56)
8 + [ATTGAATT] 562 (86.06)
8 + .AATACATT. 619 (93.66)
8 + .AAAGCATT. 645 (90.90)
8 + [AATTTATT] 932 (88.56)
8 + [AATGAAAT] 1274 (86.06)
8 + [AATGCATG] 1552 (89.08)
8 - [CATGCATT] 1552 (89.08)
8 - [ATTTCATT] 1274 (86.06)
8 - [AATAAATT] 932 (88.56)
8 - .AATGCTTT. 645 (90.90)
8 - .AATGTATT. 619 (93.66)
8 - [AATTCAAT] 562 (86.06)
8 - [AATTTATT] 312 (88.56)
8 - [AATGATTT] 261 (85.80)
9 + .AATGAATT. 855 (94.90)
9 - .AATTCATT. 855 (94.90)
10 + [ATTGAATT] 283 (86.06)
10 + [ATTTCATT] 716 (86.06)
10 + [AATGATTT] 1056 (85.80)
10 + [ACTGCATT] 1078 (85.66)
10 + .AATTCATT. 1518 (94.90)
10 + .AATGCATT. 1529 (100.00)
10 + [AATGCATC] 1656 (87.29)
10 + [ATTTCATT] 1812 (86.06)
10 - [AATGAAAT] 1812 (86.06)
10 - [GATGCATT] 1656 (87.29)
10 - .AATGCATT. 1529 (100.00)
10 - .AATGAATT. 1518 (94.90)
10 - [AATGCAGT] 1078 (85.66)
10 - [AAATCATT] 1056 (85.80)
10 - [AATGAAAT] 716 (86.06)
10 - [AATTCAAT] 283 (86.06)
11 + [AAAGAATT] 256 (85.80)
11 + [ATTTCATT] 540 (86.06)
11 + [AATAAATT] 562 (88.56)
11 + .AATGAATT. 598 (94.90)
11 + [ATTTCATT] 1187 (86.06)
11 + .AATGTATT. 1221 (93.66)
11 + [AATGAAAT] 1305 (86.06)
11 + [ATTTCATT] 1311 (86.06)
11 + .AATGAATT. 1502 (94.90)
11 - .AATTCATT. 1502 (94.90)
11 - [AATGAAAT] 1311 (86.06)
11 - [ATTTCATT] 1305 (86.06)
11 - .AATACATT. 1221 (93.66)
11 - [AATGAAAT] 1187 (86.06)
11 - .AATTCATT. 598 (94.90)
11 - [AATTTATT] 562 (88.56)
11 - [AATGAAAT] 540 (86.06)
11 - [AATTCTTT] 256 (85.80)
12 + [AAAGAATT] 1132 (85.80)
12 + [AATTTATT] 1157 (88.56)
12 - [AATAAATT] 1157 (88.56)
12 - [AATTCTTT] 1132 (85.80)
13 + [ATTGAATT] 90 (86.06)
13 + .AATGTATT. 156 (93.66)
13 + [AATTCTTT] 290 (85.80)
13 + .AATACATT. 396 (93.66)
13 + .AATTCATT. 682 (94.90)
13 - .AATGAATT. 682 (94.90)
13 - .AATGTATT. 396 (93.66)
13 - [AAAGAATT] 290 (85.80)
13 - .AATACATT. 156 (93.66)
13 - [AATTCAAT] 90 (86.06)
14 + [AAGGCATT] 77 (86.44)
14 - [AATGCCTT] 77 (86.44)
15 + .AATGCTTT. 59 (90.90)
15 + [AATGATTT] 113 (85.80)
15 + .AATGCATT. 228 (100.00)
15 + .AATGAATT. 264 (94.90)
15 + [AATTGATT] 977 (85.07)
15 + .AATGTATT. 1129 (93.66)
15 + .AATTCATT. 1228 (94.90)
15 + [ATTTCATT] 1351 (86.06)
15 - [AATGAAAT] 1351 (86.06)
15 - .AATGAATT. 1228 (94.90)
15 - .AATACATT. 1129 (93.66)
15 - [AATCAATT] 977 (85.07)
15 - .AATTCATT. 264 (94.90)
15 - .AATGCATT. 228 (100.00)
15 - [AAATCATT] 113 (85.80)
15 - .AAAGCATT. 59 (90.90)
16 + .AATGCATA. 189 (90.06)
16 + [AATGATTT] 627 (85.80)
16 + .TATGCATT. 955 (90.06)
16 - .AATGCATA. 955 (90.06)
16 - [AAATCATT] 627 (85.80)
16 - .TATGCATT. 189 (90.06)
17 + [AATATATT] 336 (87.32)
17 + [ATTGAATT] 1910 (86.06)
17 - [AATTCAAT] 1910 (86.06)
17 - [AATATATT] 336 (87.32)
18 + [AATTAATT] 376 (89.80)
18 + .AATGGATT. 591 (90.17)
18 + .AATCCATT. 871 (90.17)
18 + .AATGCATT. 1386 (100.00)
18 + [CATGCATT] 1551 (89.08)
18 - [AATGCATG] 1551 (89.08)
18 - .AATGCATT. 1386 (100.00)
18 - .AATGGATT. 871 (90.17)
18 - .AATCCATT. 591 (90.17)
18 - [AATTAATT] 376 (89.80)
19 + .AATGCATA. 50 (90.06)
19 + [AATTCAAT] 476 (86.06)
19 + [AATTAATT] 626 (89.80)
19 + [AATTGATT] 926 (85.07)
19 + .AATTCATT. 1262 (94.90)
19 + [AATGAAAT] 1455 (86.06)
19 + .AATCCATT. 1653 (90.17)
19 + .AATGCATT. 1936 (100.00)
19 + [AATTCTTT] 1959 (85.80)
19 - [AAAGAATT] 1959 (85.80)
19 - .AATGCATT. 1936 (100.00)
19 - .AATGGATT. 1653 (90.17)
19 - [ATTTCATT] 1455 (86.06)
19 - .AATGAATT. 1262 (94.90)
19 - [AATCAATT] 926 (85.07)
19 - [AATTAATT] 626 (89.80)
19 - [ATTGAATT] 476 (86.06)
19 - .TATGCATT. 50 (90.06)
20 + [AATTCTTT] 515 (85.80)
20 + .TATGCATT. 577 (90.06)
20 + .AATACATT. 740 (93.66)
20 - .AATGTATT. 740 (93.66)
20 - .AATGCATA. 577 (90.06)
20 - [AAAGAATT] 515 (85.80)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 452 35 23 44| 60 0 0 4
2 460 16 20 58| 64 0 0 0
3 54 26 19 455| 2 0 0 62
4 77 34 340 103| 9 3 44 8
5 103 340 34 77| 8 44 3 9
6 455 19 26 54| 62 0 0 2
7 58 20 16 460| 0 0 0 64
8 44 23 35 452| 4 0 0 60






GATGAGGCAGTA
TACTGCCTCATC

1 redundant motifs found:
AGATGAGGCAGT -

Best occurrences (match percentage):
Seq St oligo pos match
2 - .GATGAGACAGTA. 1828 (96.69)
3 + [GATAAGATAGTA] 942 (86.75)
3 - [GAAGAAACAATA] 731 (85.05)
4 - [GATAAAGCTGTA] 969 (86.21)
5 + .GATGAGACAGTA. 906 (96.69)
5 + [GATGCAACAGTA] 921 (86.20)
5 + [GAAGAAGAAATA] 1024 (86.76)
6 + [GATGATGCACTA] 603 (88.84)
6 - [GAAGAAGAAGTT] 548 (86.10)
7 - [GATGAAGTAGTT] 1098 (86.80)
8 + [GATGAAGCAGTG] 944 (89.80)
9 + [GAAGAAGAAGAA] 1645 (88.20)
12 - [GAATAGGCAGTA] 372 (89.29)
17 + [GAAGAAGAAGAA] 140 (88.20)
17 + [GAAGAAGAAGAA] 143 (88.20)
18 - [GATGAGGATATA] 1261 (86.43)
18 - [GAAGAAGAAGGA] 622 (86.53)
19 + .GATGAGGCAGTA. 35 (100.00)
20 - [GACGAGACAGTA] 624 (88.21)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 21 7 94 14| 0 0 3 0
2 114 2 6 14| 3 0 0 0
3 28 7 6 95| 0 0 0 3
4 20 9 95 12| 0 0 3 0
5 102 8 10 16| 3 0 0 0
6 38 6 75 17| 0 0 3 0
7 30 7 83 16| 2 0 1 0
8 41 67 13 15| 0 3 0 0
9 111 5 5 15| 3 0 0 0
10 17 13 91 15| 0 0 3 0
11 25 10 15 86| 0 0 0 3
12 105 6 9 16| 3 0 0 0





*** Interesting motifs (not highest-ranking) can also be :


ACAAACATTC
GAATGTTTGT

0 redundant motifs found:


Best occurrences (match percentage):
Seq St oligo pos match
1 + .AAAAACATTT. 134 (94.23)
1 + [AAAAACTATC] 174 (85.07)
1 + [AAATACATTT] 295 (85.42)
1 - [ATAAAAATTA] 627 (87.26)
1 - .ACAAAAAATC. 514 (91.16)
1 - [AAAAAAATTG] 454 (88.75)
1 - [AAAAATAATC] 308 (86.17)
1 - [ACACACATTC] 15 (89.95)
2 + [ACGAAAATTC] 644 (85.47)
2 + [AAAATCATTT] 1304 (85.35)
2 + [AAAAATATTT] 1462 (89.32)
2 - [TCAAATATTT] 1499 (85.28)
2 - [AAAAATATTT] 1464 (89.32)
2 - [ACCAACATTC] 879 (89.29)
3 + [ATAAAAATTA] 489 (87.26)
3 - [ATAAAAATAC] 1361 (85.60)
3 - .AAAAAAATTT. 173 (92.20)
3 - [AAAAAATTTC] 172 (89.85)
4 + [AAAAACAATT] 167 (87.42)
4 + [AACAAAATTC] 209 (85.15)
4 + [TTAAAAATTC] 328 (86.93)
4 + [CAAAAAATTC] 362 (86.99)
4 + [TAAAAAATTC] 857 (89.70)
4 + .AAAAAAATTT. 899 (92.20)
4 + [AAAAAATTTC] 900 (89.85)
4 + [AAAAAAAATT] 1139 (85.39)
4 + [AAAAAAATTG] 1140 (88.75)
4 - [TAAAAAATTT] 1362 (86.04)
4 - [AAAAAATTTC] 1361 (89.85)
4 - [AAAAATATTA] 1054 (87.15)
4 - [AAAAAAAATC] 991 (89.05)
4 - [AAAAACAATT] 930 (87.42)
4 - .AAAAAAATTC. 465 (95.86)
4 - [GAAAAAATTC] 94 (85.06)
4 - [AAAAAATTTC] 81 (89.85)
4 - [TTAAACATTT] 29 (85.30)
5 + [TAAAAAATTC] 660 (89.70)
5 + .ACATACATTC. 1140 (91.20)
5 + .AGAAACATTT. 1332 (90.03)
5 + .TCAAAAATTC. 1359 (91.82)
5 - .ACAAAAATTA. 1307 (92.14)
5 - .AAAAATATTC. 1212 (92.98)
5 - [AAAAAAAATT] 1172 (85.39)
5 - .AAAAAAATTT. 1171 (92.20)
5 - [AAAAAATTTT] 1170 (86.20)
5 - [TCAAAAATTA] 1103 (85.98)
5 - [ACACACATTT] 852 (86.29)
5 - [ACAAACAAAC] 784 (85.69)
5 - [AAATACATTC] 223 (89.08)
5 - [AAAAAAATAC] 144 (88.37)
5 - [AAAATCATTC] 58 (89.01)
5 - .ACAAAAATTC. 14 (97.98)
6 + .ACAAAAATTG. 323 (90.86)
6 + [AAAAAAAATT] 392 (85.39)
6 + .AAAAAAATTT. 393 (92.20)
6 + [AAAAAATTTC] 394 (89.85)
6 + [ACTAAAATTC] 779 (88.04)
6 + [AAAAAAAATT] 1055 (85.39)
6 + .AAAAAAATTA. 1056 (90.03)
6 + [AAAAAAGTTC] 1069 (85.87)
6 + .AGAAAAATTC. 1088 (91.67)
6 + [TCAAAAAATC] 1293 (85.00)
6 + [CCAAAAATTT] 1310 (85.44)
6 - .ATAAAAATTC. 1223 (93.09)
6 - [ACAAATTTTT] 1202 (85.43)
6 - [AAAAAAATCC] 975 (85.46)
6 - [TCAAAAATTA] 886 (85.98)
6 - .ACAAAAATTT. 117 (94.32)
7 + [CCAAAAATTC] 10 (89.10)
7 + [ACATACATTT] 54 (87.54)
7 + [ACCAAAATTC] 65 (87.27)
7 + [TCAAATATTC] 73 (88.94)
7 + .ACAAACATTC. 227 (100.00)
7 + [AAAAAGATTT] 257 (85.85)
7 + [AAAAACTTTT] 432 (88.22)
7 + .AAAAACATTC. 519 (97.89)
7 + .AAAAAAATTT. 798 (92.20)
7 + .ACAAATATTC. 1149 (95.10)
7 - .TCAAAAATTC. 596 (91.82)
7 - [TTAAACATTT] 546 (85.30)
7 - [TTAAAAATTC] 530 (86.93)
7 - [AATAAAATTC] 345 (85.92)
8 + [TTAAACATTT] 4 (85.30)
8 + [AAAATCATTC] 260 (89.01)
8 + [AAAAGCATTC] 644 (86.07)
8 + [ACAAACATCT] 919 (85.94)
8 + [ATAAAATTTC] 1172 (87.09)
8 - [TGAAACATTC] 1411 (87.53)
8 - .ATAAACATTT. 1324 (91.46)
8 - [AAAAATAATC] 1216 (86.17)
8 - [TGAAACATTC] 1190 (87.53)
8 - [TCAAAAATTT] 910 (88.16)
8 - [ACAAGAATTC] 829 (86.16)
8 - .AGAAAAATTC. 565 (91.67)
8 - .ACAAACATTC. 185 (100.00)
8 - [TCAAAAATTT] 70 (88.16)
9 + [TCAAAATTTC] 638 (85.81)
9 + [AAAAAAAATC] 928 (89.05)
9 + [AAAAAAGTTC] 996 (85.87)
9 + [ATTAACATTC] 1106 (85.18)
9 - [CAAAACATTC] 1744 (89.01)
9 - .ACAAAAATTA. 1683 (92.14)
10 + [ATAAAAATTA] 29 (87.26)
10 + [ACAAACAATG] 1096 (86.07)
10 - [ATAAAAATTT] 1452 (89.44)
10 - [AAAAACTATC] 1116 (85.07)
10 - [AAAATCATTT] 1055 (85.35)
10 - [TGAAAAATTC] 286 (85.51)
10 - [ATAAAATTTC] 222 (87.09)
11 + [AAAAAATTTT] 343 (86.20)
11 + [TAAAAAATTC] 681 (89.70)
11 + [AGAAATATTT] 768 (85.13)
11 + [ACATAAATTT] 1147 (85.52)
11 - .AAAAAAATTT. 1533 (92.20)
11 - [AAAAAATTTT] 1532 (86.20)
11 - [AGAAATATTC] 1514 (88.79)
11 - [AACAAAATTC] 1102 (85.15)
11 - .AAAAACATAC. 858 (90.39)
11 - [AAAAAAAATT] 347 (85.39)
11 - .AAAAAAATTT. 346 (92.20)
11 - [AAAAAATTTT] 345 (86.20)
12 + .ACAAACATAC. 1184 (92.50)
12 + [ACATACTTTC] 1188 (85.19)
13 + [AAAAATATTG] 71 (85.87)
13 + [ATAAAAATAC] 131 (85.60)
13 + [AAAAATATTG] 237 (85.87)
13 + .AAAAACATTT. 251 (94.23)
13 + [AAATACATTT] 395 (85.42)
13 + [ACATAAATTT] 718 (85.52)
13 + .ACAAACATTC. 758 (100.00)
13 + [TCAAAATTTC] 1007 (85.81)
13 + [CCAAACATTA] 1588 (85.29)
13 - [ACAAAAATGC] 1613 (87.85)
13 - [TAAAAAATTT] 1315 (86.04)
13 - .AAAAACATAC. 336 (90.39)
13 - [AAATACATTT] 155 (85.42)
14 + [AAAAATATTG] 29 (85.87)
14 + [CCAAACTTTC] 412 (85.12)
14 + [TAAAACATTT] 602 (88.07)
14 + [ACCAACATTT] 691 (85.63)
14 + [ACAAATTTTC] 928 (89.09)
14 + [ACAAAATTTT] 1477 (88.31)
14 - .AAAAACAATC. 1184 (91.07)
14 - [CAAAACATTT] 1015 (85.35)
14 - [ACAAAATTTT] 291 (88.31)
15 + .AAAAACAATC. 77 (91.07)
15 + [TTAAACATTC] 291 (88.96)
15 + .ACAAACATTT. 918 (96.34)
15 + [AAAAAAATTG] 972 (88.75)
15 + [CCAAACATTA] 1375 (85.29)
15 - [AAAAAAAATC] 421 (89.05)
16 + [ATAAAAATTT] 35 (89.44)
16 + [TCAAAAAATC] 650 (85.00)
16 - .ACAAACATTT. 914 (96.34)
16 - .AAAAACATAC. 504 (90.39)
17 + [CCAAAAATTT] 25 (85.44)
17 + [ACAATCATTT] 215 (87.47)
17 + [ACAAACAATT] 264 (89.53)
17 + [ACAAAATTTT] 603 (88.31)
17 + .AGAAAAATTC. 1192 (91.67)
17 + .AAAAACAATC. 1288 (91.07)
17 - [ATAAAAATTG] 620 (85.98)
17 - [TCAAAAATTT] 606 (88.16)
17 - [ACAAAAAATA] 376 (85.33)
17 - .AAAAATATTC. 373 (92.98)
17 - [TAAAAAATTT] 356 (86.04)
17 - [ACAAAAACTC] 73 (88.36)
17 - .AGAAACATTT. 10 (90.03)
18 + .AAAAACATTG. 285 (90.77)
18 + .ACAAAAATTC. 804 (97.98)
18 + [AAAAATATTA] 920 (87.15)
18 + [AAAAAAAATT] 939 (85.39)
18 + .AAAAAAATTC. 940 (95.86)
18 + .ACAAAAATTA. 1032 (92.14)
18 - [ACAAAAAATT] 1234 (87.51)
18 - .ACAAAAATTA. 68 (92.14)
18 - [CCAAACATTT] 50 (87.47)
19 + [AAAAACATAT] 501 (86.73)
19 + .ACAAACATTC. 1313 (100.00)
19 + [ACAAAAAATT] 1521 (87.51)
19 + [TAAAACTTTC] 1549 (85.72)
19 + .AAAAACTTTC. 1566 (91.88)
19 + [TAAAACATTT] 1810 (88.07)
19 - .AAAAACATAC. 1733 (90.39)
19 - [ACAAATAATC] 441 (88.28)
19 - [AAAAAAAATT] 420 (85.39)
19 - [AAAAAAATTG] 419 (88.75)
20 + [AAAAACATAT] 125 (86.73)
20 + [ATAAATATTT] 280 (86.56)
20 + [AAAAAAAATT] 718 (85.39)
20 + .AAAAAAATTC. 719 (95.86)
20 + [AAATACATTT] 739 (85.42)
20 - [ACAAACCTTC] 677 (88.16)
20 - [AAAAAAGTTC] 489 (85.87)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 406 37 22 77| 50 0 0 2
2 152 269 49 72| 25 20 5 2
3 468 26 16 32| 52 0 0 0
4 452 30 18 42| 51 0 0 1
5 461 20 19 42| 52 0 0 0
6 161 278 29 74| 26 23 0 3
7 415 17 28 82| 51 0 0 1
8 66 31 30 415| 4 0 0 48
9 57 26 28 431| 5 0 0 47
10 65 314 46 117| 5 30 2 15






ATCCTAAACA
TGTTTAGGAT

2 redundant motifs found:
ATCCTAAACAAC - ATGCTAAACA -

Best occurrences (match percentage):
Seq St oligo pos match
1 + .ATCCGAAACA. 181 (93.81)
1 + .ATTATAAAAA. 200 (90.30)
2 + [ATTTAAAAAA] 1310 (86.76)
2 + .ATTTTAAAAA. 1637 (91.07)
2 - [ATTTGAAACA] 1119 (87.87)
2 - .ATTCAAAACA. 621 (93.09)
2 - [ATCAAAAAAA] 306 (88.60)
2 - [TTCCAAAAAA] 40 (85.44)
3 + .ATCATAAAAA. 486 (92.91)
3 + .ATTTTAAACA. 665 (94.05)
3 - .ATCCAAAAAA. 1044 (92.71)
3 - [ATCCTAAAAG] 499 (85.34)
3 - .ATCTAAAACA. 284 (92.35)
3 - [ATCTAAAAAA] 177 (89.37)
4 + [ATGTTAAAAA] 22 (87.83)
4 + [ATTTAAAAAA] 1135 (86.76)
4 + [TTTTTAAACA] 1343 (86.79)
4 + .ATCCTAAACA. 1500 (100.00)
4 - [ATCAAAAATA] 1057 (85.06)
4 - [ATCTCAAAAA] 958 (85.15)
4 - [ATGTTAAAAA] 837 (87.83)
4 - [TTTTTAAACA] 32 (86.79)
5 + [ATCATACACA] 1391 (85.74)
5 - [ATCCTAATAA] 1263 (87.18)
5 - [AAACTAAACA] 1128 (85.78)
5 - [ATCCAAAATA] 496 (89.17)
5 - [ATACGAAACA] 337 (87.28)
5 - [ATCATAAATA] 228 (89.37)
6 + [TTCTAAAACA] 365 (85.09)
6 + [GTCCTAAAAA] 515 (85.26)
6 + [CTCCTAAAAA] 1123 (86.44)
6 - .ATTCAAAAAA. 951 (90.10)
6 - .ATTCAAAACA. 535 (93.09)
6 - [ATTTTAAATA] 160 (87.53)
6 - [ATCCAAAACT] 59 (87.38)
7 + [ATTTAAAAAA] 25 (86.76)
7 - .ATCTTAAATA. 402 (90.13)
8 + .ATCTGAAACA. 407 (90.47)
8 + .ATTTTAAAAA. 1144 (91.07)
8 + [AATCTAAAAA] 1245 (86.72)
8 + [ATGCCAAACA] 1450 (85.62)
8 - [TTCCAAAAAA] 1304 (85.44)
8 - [ATTTGAAACA] 1193 (87.87)
8 - [ATTGAAAACA] 993 (85.43)
8 - [ATTGAAAACA] 975 (85.43)
8 - [ATTGTAAAAA] 515 (86.75)
8 - [ATCTTATACA] 430 (85.56)
9 + [ATCCAAAACT] 1802 (87.38)
9 - [ATTAAAAACA] 1615 (88.98)
10 - [ATCCTTAAAA] 1159 (86.86)
10 - [ATTAAAAAAA] 87 (86.00)
11 + .ATGCTAAAAA. 1172 (91.17)
11 + [AACATAAACA] 1431 (88.20)
11 - .ATCAAAAACA. 1588 (91.59)
11 - [ATGAAAAACA] 1132 (85.74)
12 + [ATTCTAAACT] 250 (89.08)
12 + [ATTCAAAATA] 1016 (86.56)
12 - .ATTATAAAAA. 1061 (90.30)
12 - .ATCCTAAACA. 1028 (100.00)
12 - [ATGATAAAAA] 832 (87.06)
12 - [ATTATAAAGA] 669 (85.20)
12 - [ATCCAAAAGA] 53 (87.61)
13 + [ATTTCAAACA] 1563 (85.52)
13 + .ATCCTAAACA. 1659 (100.00)
13 + .ATCCAAAAAA. 1707 (92.71)
13 - [AATATAAACA] 1167 (85.60)
14 + [AACATAAACA] 1237 (88.20)
14 + .ATGCTAAACA. 1281 (94.15)
14 - [ATTAAAAAAA] 698 (86.00)
15 + .ATTTTAAAAA. 269 (91.07)
15 + .ATGTTAAACA. 288 (90.81)
15 + [ATTTTAAAGA] 708 (85.97)
15 + [ATTCGAAAAA] 742 (88.23)
15 + [ATTTCAAACA] 852 (85.52)
15 - [ATCGAAAAAA] 1438 (85.05)
15 - .ATTTTAAAAA. 1207 (91.07)
15 - .ATTATAAAAA. 1174 (90.30)
15 - [TTTCAAAACA] 128 (85.82)
15 - [ATTCTAAAAT] 106 (86.10)
16 + .ATCATAAAAA. 32 (92.91)
16 + .ATTCAAAAAA. 648 (90.10)
16 + [ATGCGAAACA] 967 (87.97)
16 - [ATATTAAAAA] 810 (87.14)
17 + [AATCAAAACA] 386 (85.40)
17 + [ATTAAAAACA] 628 (88.98)
17 - [ACCCAAAACA] 1126 (85.53)
17 - [ATTTGAAACA] 350 (87.87)
17 - .ATTCTAAACA. 310 (97.39)
17 - [CTCATAAACA] 187 (85.31)
17 - [ATTTTAAAGA] 128 (85.97)
18 + [ATACAAAAAA] 279 (86.18)
18 + [ATCAAAAAAA] 936 (88.60)
18 - [ATCATCAACA] 1559 (85.91)
18 - [ATCCAACACA] 1481 (85.54)
18 - [ATACAAAAAA] 1236 (86.18)
18 - [TTCATAAAAA] 679 (85.64)
18 - [ATTCTCAACA] 584 (87.41)
18 - [ATTCCAAACA] 53 (88.87)
19 + [ATCTAAAATA] 383 (85.83)
19 + [ATTTAAAAAA] 618 (86.76)
19 + [ATTTAAAACA] 1807 (89.75)
19 - [TTTTTAAACA] 1702 (86.79)
19 - [ATTCTTAACA] 1537 (87.24)
19 - [ATTCTACACA] 1361 (87.24)
19 - [ATCTGAAAAA] 434 (87.49)
20 + [TTCCAAAAAA] 652 (85.44)
20 + [ATCTCAAACA] 765 (88.13)
20 + [ATTCTATACA] 865 (86.30)
20 - [ATACAAAACA] 568 (89.16)
20 - .ATCCGAAAAA. 395 (90.83)

Frequency Matrix
All Occs Best Occs
ACGT ACGT
1 298 19 14 45| 29 0 0 0
2 40 21 19 296| 0 0 0 29
3 36 197 43 100| 0 13 3 13
4 68 198 27 83| 6 14 0 9
5 75 25 46 230| 8 0 3 18
6 309 23 22 22| 29 0 0 0
7 323 23 12 18| 29 0 0 0
8 323 15 13 25| 29 0 0 0
9 98 213 26 39| 15 13 0 1
10 313 12 15 36| 29 0 0 0