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Overview of hsp_guhaExons results from ../runs/hsp_guhaExons_sqlite.db

93 total motifs, 42 were grouped into 14 cliques with 51 singletons

Run Overview

RunIDProgramFasta (nseq)Nmotifs
12224ALIGNACEhsp_guha_5_19.fa (25)21
12225WEEDERhsp_guha_5_19.fa (25)12
12226IMPROBIZERhsp_guha_5_19.fa (25)10
12227MEMEhsp_guha_5_19.fa (25)10
12228NMICAhsp_guha_5_19.fa (25)4
12229MOBYDICKhsp_guha_5_19.fa (25)7
12230MOTIFSAMPLERhsp_guha_5_19.fa (25)5
12231YMFhsp_guha_5_19.fa (25)10

By Clique

clique 0 had 6 motifs (list hsp_guha_5_19.fa 25) gba for all members

Core: table
 GAAtgTTCTAGA24 matches in 11 regions(gbamotif 3 from WEEDER run 12225 (ID 23)hsp_guha_5_19.fa list
      tTCTAGAa50 matches in 17 regions(gbamotif 6 from WEEDER run 12225 (ID 26)hsp_guha_5_19.fa list
 GAAacTTCTAGA29 matches in 11 regions(gbamotif 9 from WEEDER run 12225 (ID 29)hsp_guha_5_19.fa list
      TTCtaGAA64 matches in 17 regions(gbamotif 10 from WEEDER run 12225 (ID 30)hsp_guha_5_19.fa list
  AAggTTCTAG29 matches in 14 regions(gbamotif 11 from WEEDER run 12225 (ID 31)hsp_guha_5_19.fa list
AGAAcgTTCTaG21 matches in 9 regions(gbamotif 12 from WEEDER run 12225 (ID 32)hsp_guha_5_19.fa list

clique 1 had 6 motifs (list hsp_guha_5_19.fa 25) gba for all members

Core: table
TCgttgCgaGACCC17 matches in 7 regions(gbamotif 8 from ALIGNACE run 12224 (ID 7)hsp_guha_5_19.fa list
    gGaGAGACCC13 matches in 6 regions(gbamotif 4 from NMICA run 12228 (ID 56)hsp_guha_5_19.fa list
     GCGAGACCC9 matches in 3 regions(gbamotif 1 from YMF run 12231 (ID 69)hsp_guha_5_19.fa list
      CGAGacCCATC5 matches in 2 regions(gbamotif 7 from YMF run 12231 (ID 75)hsp_guha_5_19.fa list
     GCgAGACCC12 matches in 5 regions(gbamotif 8 from YMF run 12231 (ID 76)hsp_guha_5_19.fa list
     GCGAGACCC11 matches in 5 regions(gbamotif 9 from YMF run 12231 (ID 77)hsp_guha_5_19.fa list

clique 2 had 4 motifs (list hsp_guha_5_19.fa 25) gba for all members

Core: table
aTTCCcGcaA29 matches in 7 regions(gbamotif 9 from ALIGNACE run 12224 (ID 8)hsp_guha_5_19.fa list
 TTCCcGCcAA16 matches in 2 regions(gbamotif 2 from NMICA run 12228 (ID 54)hsp_guha_5_19.fa list
   CCCGCC16 matches in 6 regions(gbamotif 6 from MOBYDICK run 12229 (ID 62)hsp_guha_5_19.fa list
ATTCCCGCC9 matches in 2 regions(gbamotif 4 from YMF run 12231 (ID 72)hsp_guha_5_19.fa list

clique 3 had 3 motifs (list hsp_guha_5_19.fa 25) gba for all members

Core: table
     caggCtCCgCCCac19 matches in 9 regions(gbamotif 14 from ALIGNACE run 12224 (ID 13)hsp_guha_5_19.fa list
 ggcaCCgtCctCttC21 matches in 11 regions(gbamotif 19 from ALIGNACE run 12224 (ID 18)hsp_guha_5_19.fa list
GGACaCCGACCCCaaCC2 matches in 2 regions(gbamotif 7 from MEME run 12227 (ID 49)hsp_guha_5_19.fa list

clique 4 had 3 motifs (list hsp_guha_5_19.fa 25) gba for all members

Core: table
aAAttTTcTagA62 matches in 19 regions(gbamotif 3 from ALIGNACE run 12224 (ID 2)hsp_guha_5_19.fa list
    cTTCTAGAAg32 matches in 10 regions(gbamotif 5 from WEEDER run 12225 (ID 25)hsp_guha_5_19.fa list
    gTTCTAGAAc36 matches in 11 regions(gbamotif 7 from WEEDER run 12225 (ID 27)hsp_guha_5_19.fa list

clique 5 had 3 motifs (list hsp_guha_5_19.fa 25) gba for all members

Core: table
AtGACGTCAc16 matches in 6 regions(gbamotif 15 from ALIGNACE run 12224 (ID 14)hsp_guha_5_19.fa list
     GTCAC73 matches in 23 regions(gbamotif 3 from MOBYDICK run 12229 (ID 59)hsp_guha_5_19.fa list
 TGACGTCAt22 matches in 6 regions(gbamotif 2 from YMF run 12231 (ID 70)hsp_guha_5_19.fa list

clique 6 had 3 motifs (list hsp_guha_5_19.fa 25) gba for all members

Core: table
aGAGACcCAg24 matches in 14 regions(gbamotif 13 from ALIGNACE run 12224 (ID 12)hsp_guha_5_19.fa list
 GAGACgCagat20 matches in 20 regions(gbamotif 4 from MEME run 12227 (ID 46)hsp_guha_5_19.fa list
 GAGACGCAG6 matches in 6 regions(gbamotif 5 from YMF run 12231 (ID 73)hsp_guha_5_19.fa list

clique 7 had 2 motifs (list hsp_guha_5_19.fa 25) gba for all members

Core: table
gAaaaattgtGGcGgGa28 matches in 12 regions(gbamotif 18 from ALIGNACE run 12224 (ID 17)hsp_guha_5_19.fa list
           GCGGG26 matches in 11 regions(gbamotif 4 from MOBYDICK run 12229 (ID 60)hsp_guha_5_19.fa list

clique 8 had 2 motifs (list hsp_guha_5_19.fa 25) gba for all members

Core: table
atggGcGGcGCctatct13 matches in 13 regions(gbamotif 1 from IMPROBIZER run 12226 (ID 33)hsp_guha_5_19.fa list
  GGGCGGAGC2 matches in 2 regions(gbamotif 10 from MEME run 12227 (ID 52)hsp_guha_5_19.fa list

clique 9 had 2 motifs (list hsp_guha_5_19.fa 25) gba for all members

Core: table
AGcAGgag32 matches in 20 regions(gbamotif 1 from MOTIFSAMPLER run 12230 (ID 64)hsp_guha_5_19.fa list
aGgaGGag35 matches in 20 regions(gbamotif 4 from MOTIFSAMPLER run 12230 (ID 68)hsp_guha_5_19.fa list

clique 10 had 2 motifs (list hsp_guha_5_19.fa 25) gba for all members

Core: table
aataacGTCATCta13 matches in 13 regions(gbamotif 4 from IMPROBIZER run 12226 (ID 36)hsp_guha_5_19.fa list
     CGTCA68 matches in 17 regions(gbamotif 1 from MOBYDICK run 12229 (ID 57)hsp_guha_5_19.fa list

clique 11 had 2 motifs (list hsp_guha_5_19.fa 25) gba for all members

Core: table
  GGACC27 matches in 12 regions(gbamotif 7 from MOBYDICK run 12229 (ID 63)hsp_guha_5_19.fa list
AGGGACCTC5 matches in 1 regions(gbamotif 3 from YMF run 12231 (ID 71)hsp_guha_5_19.fa list

clique 12 had 2 motifs (list hsp_guha_5_19.fa 25) gba for all members

Core: table
AGAAcgTTCT32 matches in 12 regions(gbamotif 2 from WEEDER run 12225 (ID 22)hsp_guha_5_19.fa list
 GAAcaTTC90 matches in 18 regions(gbamotif 8 from WEEDER run 12225 (ID 28)hsp_guha_5_19.fa list

clique 13 had 2 motifs (list hsp_guha_5_19.fa 25) gba for all members

Core: table
ACCCaTCGTGG5 matches in 1 regions(gbamotif 6 from YMF run 12231 (ID 74)hsp_guha_5_19.fa list
ACCCaTCGTGG6 matches in 2 regions(gbamotif 10 from YMF run 12231 (ID 78)hsp_guha_5_19.fa list

Run 12224 was ALIGNACE on hsp_guha_5_19.fa (25)

aAAAAataaaaaAA90 matches in 23 regions(gbamotif 1 from ALIGNACE run 12224 (ID 0)hsp_guha_5_19.fa list
aaAatTTccaaaAAA81 matches in 24 regions(gbamotif 2 from ALIGNACE run 12224 (ID 1)hsp_guha_5_19.fa list
aAAttTTcTagA62 matches in 19 regions(gbamotif 3 from ALIGNACE run 12224 (ID 2)hsp_guha_5_19.fa list
AaaaAAAaAAA51 matches in 22 regions(gbamotif 4 from ALIGNACE run 12224 (ID 3)hsp_guha_5_19.fa list
AAAAtTTgaA68 matches in 20 regions(gbamotif 5 from ALIGNACE run 12224 (ID 4)hsp_guha_5_19.fa list
TTtgAAAAAa44 matches in 19 regions(gbamotif 6 from ALIGNACE run 12224 (ID 5)hsp_guha_5_19.fa list
TttgAatTcCCggcAAA26 matches in 8 regions(gbamotif 7 from ALIGNACE run 12224 (ID 6)hsp_guha_5_19.fa list
TCgttgCgaGACCC17 matches in 7 regions(gbamotif 8 from ALIGNACE run 12224 (ID 7)hsp_guha_5_19.fa list
aTTCCcGcaA29 matches in 7 regions(gbamotif 9 from ALIGNACE run 12224 (ID 8)hsp_guha_5_19.fa list
aaAAAAattTTt42 matches in 19 regions(gbamotif 10 from ALIGNACE run 12224 (ID 9)hsp_guha_5_19.fa list
CgGgAATTCAAA22 matches in 9 regions(gbamotif 11 from ALIGNACE run 12224 (ID 10)hsp_guha_5_19.fa list
TGGGtgtcGCC19 matches in 12 regions(gbamotif 12 from ALIGNACE run 12224 (ID 11)hsp_guha_5_19.fa list
aGAGACcCAg24 matches in 14 regions(gbamotif 13 from ALIGNACE run 12224 (ID 12)hsp_guha_5_19.fa list
     caggCtCCgCCCac19 matches in 9 regions(gbamotif 14 from ALIGNACE run 12224 (ID 13)hsp_guha_5_19.fa list
AtGACGTCAc16 matches in 6 regions(gbamotif 15 from ALIGNACE run 12224 (ID 14)hsp_guha_5_19.fa list
gAgAaAaaggGaGag29 matches in 15 regions(gbamotif 16 from ALIGNACE run 12224 (ID 15)hsp_guha_5_19.fa list
CaaaAAaAAttTGtatTcc25 matches in 11 regions(gbamotif 17 from ALIGNACE run 12224 (ID 16)hsp_guha_5_19.fa list
gAaaaattgtGGcGgGa28 matches in 12 regions(gbamotif 18 from ALIGNACE run 12224 (ID 17)hsp_guha_5_19.fa list
 ggcaCCgtCctCttC21 matches in 11 regions(gbamotif 19 from ALIGNACE run 12224 (ID 18)hsp_guha_5_19.fa list
CtGttCtccGaGgtccCTgaAA13 matches in 6 regions(gbamotif 20 from ALIGNACE run 12224 (ID 19)hsp_guha_5_19.fa list
GAAaaTTctaG29 matches in 12 regions(gbamotif 21 from ALIGNACE run 12224 (ID 20)hsp_guha_5_19.fa list

Run 12225 was WEEDER on hsp_guha_5_19.fa (25)

GAAtaTTC92 matches in 18 regions(gbamotif 1 from WEEDER run 12225 (ID 21)hsp_guha_5_19.fa list
AGAAcgTTCT32 matches in 12 regions(gbamotif 2 from WEEDER run 12225 (ID 22)hsp_guha_5_19.fa list
 GAAtgTTCTAGA24 matches in 11 regions(gbamotif 3 from WEEDER run 12225 (ID 23)hsp_guha_5_19.fa list
AGGCGCCT12 matches in 5 regions(gbamotif 4 from WEEDER run 12225 (ID 24)hsp_guha_5_19.fa list
    cTTCTAGAAg32 matches in 10 regions(gbamotif 5 from WEEDER run 12225 (ID 25)hsp_guha_5_19.fa list
      tTCTAGAa50 matches in 17 regions(gbamotif 6 from WEEDER run 12225 (ID 26)hsp_guha_5_19.fa list
    gTTCTAGAAc36 matches in 11 regions(gbamotif 7 from WEEDER run 12225 (ID 27)hsp_guha_5_19.fa list
 GAAcaTTC90 matches in 18 regions(gbamotif 8 from WEEDER run 12225 (ID 28)hsp_guha_5_19.fa list
 GAAacTTCTAGA29 matches in 11 regions(gbamotif 9 from WEEDER run 12225 (ID 29)hsp_guha_5_19.fa list
      TTCtaGAA64 matches in 17 regions(gbamotif 10 from WEEDER run 12225 (ID 30)hsp_guha_5_19.fa list
  AAggTTCTAG29 matches in 14 regions(gbamotif 11 from WEEDER run 12225 (ID 31)hsp_guha_5_19.fa list
AGAAcgTTCTaG21 matches in 9 regions(gbamotif 12 from WEEDER run 12225 (ID 32)hsp_guha_5_19.fa list

Run 12226 was IMPROBIZER on hsp_guha_5_19.fa (25)

atggGcGGcGCctatct13 matches in 13 regions(gbamotif 1 from IMPROBIZER run 12226 (ID 33)hsp_guha_5_19.fa list
aattttGcGTCaCaa14 matches in 14 regions(gbamotif 2 from IMPROBIZER run 12226 (ID 34)hsp_guha_5_19.fa list
atCTaGaAGat16 matches in 16 regions(gbamotif 3 from IMPROBIZER run 12226 (ID 35)hsp_guha_5_19.fa list
aataacGTCATCta13 matches in 13 regions(gbamotif 4 from IMPROBIZER run 12226 (ID 36)hsp_guha_5_19.fa list
tgggAGGtG14 matches in 14 regions(gbamotif 5 from IMPROBIZER run 12226 (ID 37)hsp_guha_5_19.fa list
aGTAtAaAat15 matches in 15 regions(gbamotif 6 from IMPROBIZER run 12226 (ID 38)hsp_guha_5_19.fa list
aaGCTGTA12 matches in 12 regions(gbamotif 7 from IMPROBIZER run 12226 (ID 39)hsp_guha_5_19.fa list
aGTgACA12 matches in 12 regions(gbamotif 8 from IMPROBIZER run 12226 (ID 40)hsp_guha_5_19.fa list
ttGGgTgTct12 matches in 12 regions(gbamotif 9 from IMPROBIZER run 12226 (ID 41)hsp_guha_5_19.fa list
atATtcCAG13 matches in 13 regions(gbamotif 10 from IMPROBIZER run 12226 (ID 42)hsp_guha_5_19.fa list

Run 12227 was MEME on hsp_guha_5_19.fa (25)

tTtTcttgaactttttttTtTTcttTtt25 matches in 25 regions(gbamotif 1 from MEME run 12227 (ID 43)hsp_guha_5_19.fa list
attTtcgAgAAaaTTccaga25 matches in 25 regions(gbamotif 2 from MEME run 12227 (ID 44)hsp_guha_5_19.fa list
ccttgcatagacccgtCccacCCccacccatCatctcgagacccgca8 matches in 8 regions(gbamotif 3 from MEME run 12227 (ID 45)hsp_guha_5_19.fa list
 GAGACgCagat20 matches in 20 regions(gbamotif 4 from MEME run 12227 (ID 46)hsp_guha_5_19.fa list
CaatGgCtGCgaCaAAaAtg7 matches in 7 regions(gbamotif 5 from MEME run 12227 (ID 47)hsp_guha_5_19.fa list
cAtTTTGAAAAataAaaAaaa16 matches in 16 regions(gbamotif 6 from MEME run 12227 (ID 48)hsp_guha_5_19.fa list
GGACaCCGACCCCaaCC2 matches in 2 regions(gbamotif 7 from MEME run 12227 (ID 49)hsp_guha_5_19.fa list
agGGatGaGcagCtG8 matches in 8 regions(gbamotif 8 from MEME run 12227 (ID 50)hsp_guha_5_19.fa list
AGAcaCgCCgttTTccgTcGTcTTTcggtG3 matches in 3 regions(gbamotif 9 from MEME run 12227 (ID 51)hsp_guha_5_19.fa list
  GGGCGGAGC2 matches in 2 regions(gbamotif 10 from MEME run 12227 (ID 52)hsp_guha_5_19.fa list

Run 12228 was NMICA on hsp_guha_5_19.fa (25)

tcTTCtAGAA24 matches in 11 regions(gbamotif 1 from NMICA run 12228 (ID 53)hsp_guha_5_19.fa list
 TTCCcGCcAA16 matches in 2 regions(gbamotif 2 from NMICA run 12228 (ID 54)hsp_guha_5_19.fa list
TTtcgagAAA62 matches in 20 regions(gbamotif 3 from NMICA run 12228 (ID 55)hsp_guha_5_19.fa list
    gGaGAGACCC13 matches in 6 regions(gbamotif 4 from NMICA run 12228 (ID 56)hsp_guha_5_19.fa list

Run 12229 was MOBYDICK on hsp_guha_5_19.fa (25)

     CGTCA68 matches in 17 regions(gbamotif 1 from MOBYDICK run 12229 (ID 57)hsp_guha_5_19.fa list
CTAAC40 matches in 17 regions(gbamotif 2 from MOBYDICK run 12229 (ID 58)hsp_guha_5_19.fa list
     GTCAC73 matches in 23 regions(gbamotif 3 from MOBYDICK run 12229 (ID 59)hsp_guha_5_19.fa list
           GCGGG26 matches in 11 regions(gbamotif 4 from MOBYDICK run 12229 (ID 60)hsp_guha_5_19.fa list
CCAGC30 matches in 15 regions(gbamotif 5 from MOBYDICK run 12229 (ID 61)hsp_guha_5_19.fa list
   CCCGCC16 matches in 6 regions(gbamotif 6 from MOBYDICK run 12229 (ID 62)hsp_guha_5_19.fa list
  GGACC27 matches in 12 regions(gbamotif 7 from MOBYDICK run 12229 (ID 63)hsp_guha_5_19.fa list

Run 12230 was MOTIFSAMPLER on hsp_guha_5_19.fa (25)

AGcAGgag32 matches in 20 regions(gbamotif 1 from MOTIFSAMPLER run 12230 (ID 64)hsp_guha_5_19.fa list
GgGaGgcg38 matches in 19 regions(gbamotif 2 from MOTIFSAMPLER run 12230 (ID 65)hsp_guha_5_19.fa list
tatATATA38 matches in 21 regions(gbamotif 3 from MOTIFSAMPLER run 12230 (ID 66)hsp_guha_5_19.fa list
agaGacgC39 matches in 21 regions(gbamotif 4 from MOTIFSAMPLER run 12230 (ID 67)hsp_guha_5_19.fa list
aGgaGGag35 matches in 20 regions(gbamotif 4 from MOTIFSAMPLER run 12230 (ID 68)hsp_guha_5_19.fa list

Run 12231 was YMF on hsp_guha_5_19.fa (25)

     GCGAGACCC9 matches in 3 regions(gbamotif 1 from YMF run 12231 (ID 69)hsp_guha_5_19.fa list
 TGACGTCAt22 matches in 6 regions(gbamotif 2 from YMF run 12231 (ID 70)hsp_guha_5_19.fa list
AGGGACCTC5 matches in 1 regions(gbamotif 3 from YMF run 12231 (ID 71)hsp_guha_5_19.fa list
ATTCCCGCC9 matches in 2 regions(gbamotif 4 from YMF run 12231 (ID 72)hsp_guha_5_19.fa list
 GAGACGCAG6 matches in 6 regions(gbamotif 5 from YMF run 12231 (ID 73)hsp_guha_5_19.fa list
ACCCaTCGTGG5 matches in 1 regions(gbamotif 6 from YMF run 12231 (ID 74)hsp_guha_5_19.fa list
      CGAGacCCATC5 matches in 2 regions(gbamotif 7 from YMF run 12231 (ID 75)hsp_guha_5_19.fa list
     GCgAGACCC12 matches in 5 regions(gbamotif 8 from YMF run 12231 (ID 76)hsp_guha_5_19.fa list
     GCGAGACCC11 matches in 5 regions(gbamotif 9 from YMF run 12231 (ID 77)hsp_guha_5_19.fa list
ACCCaTCGTGG6 matches in 2 regions(gbamotif 10 from YMF run 12231 (ID 78)hsp_guha_5_19.fa list